Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.53326 * 2 1 4 4 C 1.53036 * 109.50614 * 120.10167 * 2 1 3 5 5 N 1.46846 * 109.52384 * 179.12259 * 4 2 1 6 6 C 1.46903 * 110.99717 * 174.15896 * 5 4 2 7 7 C 1.53006 * 109.46632 * 190.00023 * 6 5 4 8 8 C 1.50707 * 109.46465 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00287 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99281 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00714 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99673 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47437 * 89.99847 * 12 10 8 14 14 H 1.48501 * 109.47134 * 209.99980 * 12 10 8 15 15 H 1.48501 * 109.47052 * 329.99810 * 12 10 8 16 16 C 1.46842 * 111.19700 * 298.25435 * 5 4 2 17 17 C 1.53041 * 109.52407 * 61.74724 * 16 5 4 18 18 C 1.53123 * 109.50348 * 239.90602 * 2 1 3 19 19 H 1.09000 * 109.52181 * 302.30675 * 18 2 1 20 20 N 1.46898 * 109.52252 * 62.49853 * 18 2 1 21 21 H 1.08999 * 109.47150 * 299.89776 * 1 2 3 22 22 H 1.09001 * 109.47166 * 59.90364 * 1 2 3 23 23 H 1.08995 * 109.46878 * 179.89845 * 1 2 3 24 24 H 1.09001 * 109.47001 * 180.09832 * 3 2 1 25 25 H 1.09001 * 109.47537 * 300.09991 * 3 2 1 26 26 H 1.09001 * 109.47095 * 60.10055 * 3 2 1 27 27 H 1.08999 * 109.46075 * 299.13575 * 4 2 1 28 28 H 1.08994 * 109.46383 * 59.11304 * 4 2 1 29 29 H 1.08996 * 109.47208 * 309.99780 * 6 5 4 30 30 H 1.08994 * 109.47072 * 70.00301 * 6 5 4 31 31 H 1.09005 * 109.47148 * 299.99641 * 7 6 5 32 32 H 1.08994 * 109.47164 * 60.00335 * 7 6 5 33 33 H 0.96996 * 120.00561 * 180.02562 * 11 10 8 34 34 H 1.09006 * 109.46447 * 181.75636 * 16 5 4 35 35 H 1.08991 * 109.46739 * 301.74021 * 16 5 4 36 36 H 1.08997 * 109.50282 * 60.75542 * 17 16 5 37 37 H 1.08999 * 109.50511 * 180.87834 * 17 16 5 38 38 H 1.00906 * 111.00015 * 180.02562 * 20 18 2 39 39 H 1.00903 * 111.00234 * 303.95030 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0410 -0.7235 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4874 7 6 5.5497 -1.0827 2.5485 8 6 6.0914 -1.6616 3.8301 9 1 5.4238 -2.1404 4.5310 10 6 7.4395 -1.5800 4.1077 11 7 8.2527 -0.9974 3.2539 12 14 8.1112 -2.2982 5.6959 13 1 8.4957 -3.7155 5.4747 14 1 9.3031 -1.5231 6.1246 15 1 7.0687 -2.2271 6.7511 16 6 4.0230 -1.4729 0.0723 17 6 3.5712 -0.7718 -1.2108 18 6 2.0412 -0.7237 -1.2488 19 1 1.6453 -1.7391 -1.2691 20 7 1.6025 -0.0002 -2.4496 21 1 -0.3633 0.5122 0.8909 22 1 -0.3633 0.5153 -0.8891 23 1 -0.3633 -1.0276 -0.0018 24 1 3.1316 1.4408 -0.0018 25 1 1.6774 1.9568 -0.8891 26 1 1.6803 1.9557 0.8909 27 1 1.6906 -0.2023 2.1389 28 1 1.6650 -1.7465 1.2542 29 1 3.5629 -0.8144 3.3367 30 1 3.8261 -2.3746 2.5215 31 1 6.0242 -1.5742 1.6991 32 1 5.7610 -0.0139 2.5143 33 1 9.2011 -0.9403 3.4490 34 1 5.1121 -1.4961 0.1093 35 1 3.6374 -2.4923 0.0840 36 1 3.9678 0.2433 -1.2298 37 1 3.9396 -1.3232 -2.0759 38 1 1.9276 -0.4593 -3.2874 39 1 0.5990 0.1053 -2.4618 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307036692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -36.181748 kcal Electronic energy + Delta-G solvation = -16523.870520 eV Core-core repulsion = 14078.451017 eV Total energy + Delta-G solvation = -2445.419503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85083 -37.13581 -35.02160 -33.89529 -32.23520 -30.35981 -28.00723 -27.37257 -26.13076 -23.80207 -23.20776 -21.41621 -19.15613 -18.59480 -16.94628 -16.61725 -16.51933 -16.20672 -15.69480 -15.52104 -14.77973 -14.47953 -14.37173 -13.96207 -13.77745 -13.35154 -13.04664 -12.83353 -12.79213 -12.58832 -12.51169 -12.32207 -12.09602 -11.88951 -11.68581 -11.50266 -11.33083 -11.03147 -10.95470 -10.52869 -9.50680 -9.11864 -8.19894 -6.31513 1.39714 1.41508 1.52697 2.40184 3.06424 3.13309 3.57960 3.71259 3.82973 4.06272 4.25997 4.31873 4.45105 4.46330 4.55837 4.59553 4.68633 4.78963 4.82807 4.93067 4.94843 5.01698 5.09249 5.15424 5.19642 5.29437 5.40464 5.43378 5.48509 5.67842 5.71569 5.79895 6.12330 6.31888 6.34927 6.36839 6.70496 6.85698 7.37603 8.92316 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052447 B = 0.005626 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.743700 B = 4976.038753 C = 5196.830825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.115 4.115 4 C 0.064 3.936 5 N -0.543 5.543 6 C 0.080 3.920 7 C 0.038 3.962 8 C -0.545 4.545 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.263 1.263 16 C 0.057 3.943 17 C -0.103 4.103 18 C 0.109 3.891 19 H 0.031 0.969 20 N -0.842 5.842 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.017 0.983 31 H -0.006 1.006 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.347 0.653 39 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 0.270 -9.422 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 C -0.173 4.173 4 C -0.064 4.064 5 N -0.268 5.268 6 C -0.048 4.048 7 C 0.000 4.000 8 C -0.584 4.584 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.572 5.572 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.187 1.187 16 C -0.071 4.071 17 C -0.141 4.141 18 C -0.002 4.002 19 H 0.049 0.951 20 N -0.374 5.374 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.101 1.404 -9.207 17.742 hybrid contribution 0.188 -2.036 0.698 2.161 sum -14.912 -0.632 -8.509 17.181 Atomic orbital electron populations 1.21831 0.92765 1.01980 1.02949 1.20571 0.95970 0.96157 0.92604 1.21561 1.00679 0.94348 1.00692 1.22222 0.86809 0.98423 0.98988 1.61899 1.08164 1.54475 1.02228 1.21952 0.96540 0.95531 0.90748 1.18910 0.90811 0.95044 0.95186 1.21631 0.93571 1.37594 1.05590 0.92257 1.25964 0.97432 0.95593 1.00618 1.70113 1.04302 1.44855 1.37923 0.85426 0.77943 0.78360 0.79170 1.19726 1.20665 1.18709 1.22037 0.99603 0.94568 0.90916 1.21576 0.95761 1.01272 0.95534 1.21193 0.94097 0.94168 0.90761 0.95077 1.58658 1.18420 1.56641 1.03700 0.92064 0.90707 0.92529 0.94009 0.91557 0.94034 0.90980 0.95453 0.91977 0.96479 0.98775 0.99073 0.92748 0.92634 0.95600 0.91516 0.90803 0.83956 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.20 71.98 0.59 -1.87 16 2 C -0.05 -1.26 0.59 -52.13 -0.03 -1.29 16 3 C -0.12 -3.10 7.85 71.98 0.57 -2.53 16 4 C 0.06 1.91 4.18 86.33 0.36 2.27 16 5 N -0.54 -20.46 3.94 -896.38 -3.53 -23.99 16 6 C 0.08 3.53 4.90 86.30 0.42 3.95 16 7 C 0.04 2.09 4.90 29.85 0.15 2.24 16 8 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 10 C 0.00 0.11 5.46 84.65 0.46 0.57 16 11 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 12 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.06 2.04 5.29 86.33 0.46 2.49 16 17 C -0.10 -2.93 5.32 30.65 0.16 -2.77 16 18 C 0.11 2.51 2.50 45.00 0.11 2.63 16 19 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 20 N -0.84 -15.12 8.39 -168.34 -1.41 -16.53 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.07 1.10 6.64 -2.39 -0.02 1.08 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.04 1.36 6.01 -2.39 -0.01 1.35 16 25 H 0.07 1.61 7.55 -2.39 -0.02 1.59 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 2.14 8.02 -2.39 -0.02 2.12 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 2.69 7.99 -2.39 -0.02 2.67 16 30 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 31 H -0.01 -0.36 6.43 -2.38 -0.02 -0.37 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.06 2.31 6.21 -2.38 -0.01 2.30 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 2.13 6.58 -2.39 -0.02 2.11 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.35 5.23 9.04 -89.69 -0.81 4.42 16 39 H 0.35 4.97 7.15 -89.69 -0.64 4.33 16 Total: -1.00 -65.28 295.70 0.42 -64.87 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.43 Total: 12.37 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 3.48 Total: -25.98 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -4.66 Total: -98.22 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.28 0.42 -64.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.686 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds