Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.53458 * 2 1 4 4 C 1.53035 * 109.50561 * 120.09785 * 2 1 3 5 5 N 1.46850 * 109.52281 * 60.75930 * 4 2 1 6 6 C 1.46902 * 110.99890 * 185.84168 * 5 4 2 7 7 C 1.53001 * 109.47217 * 170.00322 * 6 5 4 8 8 C 1.50694 * 109.47168 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99792 * 179.72330 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.46841 * 111.19818 * 61.74754 * 5 4 2 17 17 C 1.53042 * 109.52125 * 298.25707 * 16 5 4 18 18 C 1.53118 * 109.27912 * 59.17836 * 17 16 5 19 19 H 1.08999 * 109.52459 * 62.25171 * 18 17 16 20 20 N 1.46900 * 109.52235 * 182.44225 * 18 17 16 21 21 H 1.08995 * 109.47051 * 299.89947 * 1 2 3 22 22 H 1.08997 * 109.47152 * 59.90423 * 1 2 3 23 23 H 1.08999 * 109.46912 * 179.90280 * 1 2 3 24 24 H 1.08999 * 109.46709 * 180.10211 * 3 2 1 25 25 H 1.09004 * 109.46646 * 300.09673 * 3 2 1 26 26 H 1.08996 * 109.47183 * 60.09578 * 3 2 1 27 27 H 1.09006 * 109.45820 * 300.74915 * 4 2 1 28 28 H 1.08997 * 109.46859 * 180.77925 * 4 2 1 29 29 H 1.09000 * 109.46932 * 50.00113 * 6 5 4 30 30 H 1.09002 * 109.46978 * 290.00051 * 6 5 4 31 31 H 1.08998 * 109.46837 * 59.99958 * 7 6 5 32 32 H 1.09002 * 109.46926 * 299.99762 * 7 6 5 33 33 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 34 34 H 1.09003 * 109.46461 * 58.26507 * 16 5 4 35 35 H 1.08994 * 109.46703 * 178.23806 * 16 5 4 36 36 H 1.08999 * 109.50065 * 299.23922 * 17 16 5 37 37 H 1.09005 * 109.50270 * 179.12212 * 17 16 5 38 38 H 1.00904 * 111.00049 * 299.68189 * 20 18 17 39 39 H 1.00896 * 111.00048 * 63.63785 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0410 -0.7234 1.2480 5 7 1.5676 -2.1134 1.2379 6 6 1.9223 -2.7995 2.4875 7 6 1.2064 -4.1503 2.5487 8 6 1.5709 -4.8543 3.8303 9 1 2.2459 -4.3855 4.5309 10 6 1.0424 -6.0971 4.1085 11 7 1.3647 -6.7139 5.2244 12 14 -0.1246 -6.9084 2.8964 13 1 0.6533 -7.7292 1.9339 14 1 -1.0767 -7.7784 3.6325 15 1 -0.8783 -5.8625 2.1592 16 6 2.0846 -2.8420 0.0725 17 6 1.5750 -2.1818 -1.2107 18 6 2.0412 -0.7239 -1.2487 19 1 3.1305 -0.6901 -1.2689 20 7 1.5061 -0.0685 -2.4496 21 1 -0.3633 0.5122 0.8908 22 1 -0.3633 0.5153 -0.8891 23 1 -0.3633 -1.0277 -0.0017 24 1 3.1316 1.4407 -0.0018 25 1 1.6774 1.9566 -0.8892 26 1 1.6803 1.9557 0.8908 27 1 1.6669 -0.2188 2.1389 28 1 3.1309 -0.7110 1.2545 29 1 1.6177 -2.1880 3.3368 30 1 3.0003 -2.9577 2.5217 31 1 1.5111 -4.7617 1.6994 32 1 0.1285 -3.9921 2.5145 33 1 0.9927 -7.5881 5.4202 34 1 3.1744 -2.8195 0.0843 35 1 1.7424 -3.8762 0.1095 36 1 0.4857 -2.2162 -1.2297 37 1 1.9716 -2.7135 -2.0757 38 1 1.8298 -0.5287 -3.2873 39 1 0.4982 -0.0326 -2.4232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307036693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = -13.651143 kcal Electronic energy + Delta-G solvation = -16604.831676 eV Core-core repulsion = 14160.389174 eV Total energy + Delta-G solvation = -2444.442503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80892 -35.81995 -33.10985 -32.84756 -30.78242 -29.08830 -27.16824 -26.09204 -24.48604 -22.42128 -21.74172 -19.73054 -18.31634 -16.90364 -16.19308 -15.41243 -14.87069 -14.45069 -14.26791 -14.10297 -13.69840 -13.25307 -12.95864 -12.69465 -12.60945 -11.88782 -11.84005 -11.77510 -11.38503 -11.29304 -11.18120 -10.96496 -10.62004 -10.55634 -10.14755 -9.88455 -9.84292 -9.63245 -9.20012 -8.66124 -8.51657 -7.78841 -6.04202 -4.02046 3.31085 3.38814 3.44639 4.32684 4.46184 4.50939 4.68892 4.90850 5.04736 5.27334 5.30298 5.37153 5.49962 5.59375 5.70984 5.79384 5.79998 5.88625 5.92567 6.03706 6.08408 6.17503 6.19958 6.28517 6.35726 6.38705 6.42382 6.61839 6.77973 7.07004 7.17467 7.32484 7.37111 7.63092 7.67033 7.86559 8.53769 9.00273 9.58467 11.09289 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043753 B = 0.006387 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.803990 B = 4383.104615 C = 4667.434492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C -0.132 4.132 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.071 3.929 7 C -0.006 4.006 8 C -0.521 4.521 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.904 5.904 12 Si 0.879 3.121 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C 0.056 3.944 17 C -0.151 4.151 18 C 0.100 3.900 19 H 0.074 0.926 20 N -0.843 5.843 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.010 0.990 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.027 0.973 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.336 0.664 39 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 12.878 -14.165 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 C -0.189 4.189 4 C -0.065 4.065 5 N -0.263 5.263 6 C -0.055 4.055 7 C -0.044 4.044 8 C -0.559 4.559 9 H 0.089 0.911 10 C -0.134 4.134 11 N -0.543 5.543 12 Si 0.707 3.293 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.188 1.188 16 C -0.072 4.072 17 C -0.191 4.191 18 C -0.011 4.011 19 H 0.092 0.908 20 N -0.372 5.372 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.389 13.382 -13.849 19.262 hybrid contribution -0.083 -1.620 -0.573 1.721 sum -0.471 11.762 -14.422 18.616 Atomic orbital electron populations 1.21799 0.94129 1.02687 1.00652 1.20548 0.96464 0.94824 0.93507 1.21732 1.00358 0.95207 1.01652 1.22131 0.96850 0.89919 0.97551 1.61997 1.59745 1.01260 1.03281 1.22105 0.97595 0.96764 0.89061 1.19567 0.96438 0.91479 0.96923 1.21099 1.28672 1.02440 1.03728 0.91149 1.24995 0.96181 0.97013 0.95166 1.69919 1.44783 1.15199 1.24432 0.86773 0.81432 0.79576 0.81537 1.20433 1.21406 1.18765 1.22019 0.96662 0.98727 0.89827 1.22492 1.02101 0.96967 0.97546 1.21490 0.98813 0.90819 0.90017 0.90831 1.59004 1.15057 1.59145 1.04003 0.92925 0.93421 0.91180 0.93374 0.91563 0.93274 0.90806 0.95490 0.91481 0.95705 0.97182 0.95762 0.92749 0.95443 0.90079 0.90982 0.92244 0.85210 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.65 37.16 0.28 -1.34 16 2 C -0.05 -0.64 0.59 -154.43 -0.09 -0.73 16 3 C -0.13 -1.45 8.35 37.16 0.31 -1.14 16 4 C 0.06 0.93 4.18 -3.83 -0.02 0.92 16 5 N -0.54 -9.20 3.94 -234.67 -0.92 -10.13 16 6 C 0.07 1.46 4.90 -3.82 -0.02 1.44 16 7 C -0.01 -0.16 3.97 -27.89 -0.11 -0.27 16 8 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 9 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 12 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 16 C 0.06 0.89 5.29 -3.83 -0.02 0.87 16 17 C -0.15 -1.90 5.31 -26.65 -0.14 -2.04 16 18 C 0.10 1.15 2.50 -67.59 -0.17 0.98 16 19 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 20 N -0.84 -8.11 8.57 -4.56 -0.04 -8.15 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 23 H 0.07 0.96 6.01 -51.93 -0.31 0.65 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.72 7.69 -51.93 -0.40 0.32 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.38 7.99 -51.93 -0.41 0.96 16 30 H 0.02 0.52 8.12 -51.93 -0.42 0.09 16 31 H 0.01 0.24 5.86 -51.93 -0.30 -0.06 16 32 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 1.41 6.21 -51.93 -0.32 1.09 16 36 H 0.07 0.94 6.58 -51.93 -0.34 0.59 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.34 2.77 9.04 -39.29 -0.36 2.42 16 39 H 0.34 3.10 6.96 -39.29 -0.27 2.82 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -30.03 292.08 -7.68 -37.71 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.82 Total: 0.94 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.40 Total: -14.74 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.19 Total: -45.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.03 -7.68 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.057 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds