Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.53004 * 109.47052 * 119.99713 * 2 1 3 5 5 H 1.09000 * 109.47185 * 54.72036 * 4 2 1 6 6 C 1.53000 * 109.46909 * 294.72686 * 4 2 1 7 7 C 1.52994 * 109.47313 * 174.72826 * 4 2 1 8 8 H 1.09005 * 110.55323 * 67.98352 * 7 4 2 9 9 C 1.54993 * 110.75247 * 190.95664 * 7 4 2 10 10 C 1.55140 * 102.09541 * 155.67269 * 9 7 4 11 11 C 1.54102 * 104.02904 * 339.00352 * 10 9 7 12 12 C 1.52999 * 109.88136 * 238.59111 * 11 10 9 13 13 C 1.50701 * 109.87647 * 117.59155 * 11 10 9 14 14 H 1.07996 * 120.00293 * 0.29907 * 13 11 10 15 15 C 1.37888 * 120.00008 * 180.31083 * 13 11 10 16 16 N 1.31515 * 119.99830 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99879 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47450 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47358 * 119.99565 * 17 15 13 20 20 H 1.48498 * 109.46871 * 239.99497 * 17 15 13 21 21 O 1.43744 * 107.42485 * 358.09295 * 11 10 9 22 22 H 1.09003 * 109.47211 * 305.80534 * 1 2 3 23 23 H 1.09003 * 109.46551 * 65.80425 * 1 2 3 24 24 H 1.08998 * 109.47283 * 185.80428 * 1 2 3 25 25 H 1.09001 * 109.47222 * 239.99276 * 2 1 3 26 26 H 1.09001 * 109.46824 * 299.99618 * 3 2 1 27 27 H 1.08993 * 109.47384 * 59.99719 * 3 2 1 28 28 H 1.09008 * 109.46989 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47098 * 179.97438 * 6 4 2 30 30 H 1.09001 * 109.47406 * 299.99735 * 6 4 2 31 31 H 1.09002 * 109.47188 * 60.00042 * 6 4 2 32 32 H 1.08999 * 110.91151 * 273.78295 * 9 7 4 33 33 H 1.09002 * 110.91171 * 37.35800 * 9 7 4 34 34 H 1.09002 * 110.52580 * 220.40418 * 10 9 7 35 35 H 1.08999 * 110.60167 * 97.64457 * 10 9 7 36 36 H 1.09000 * 109.46948 * 299.69532 * 12 11 10 37 37 H 1.08997 * 109.47339 * 59.69354 * 12 11 10 38 38 H 1.09001 * 109.47145 * 179.69893 * 12 11 10 39 39 H 0.96993 * 119.99502 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6015 -1.7179 1.2979 6 6 1.6411 0.0726 2.4950 7 6 3.5642 -0.8370 1.1849 8 1 4.0269 0.1456 1.2777 9 6 4.0893 -1.7937 2.2855 10 6 5.4413 -2.2653 1.6883 11 6 5.2955 -1.9991 0.1775 12 6 5.4762 -3.3040 -0.6005 13 6 6.3241 -0.9913 -0.2668 14 1 7.0207 -0.5794 0.4484 15 6 6.3757 -0.5948 -1.5864 16 7 5.5276 -1.0965 -2.4574 17 14 7.6511 0.6539 -2.1373 18 1 8.4801 1.0608 -0.9743 19 1 8.5205 0.0477 -3.1774 20 1 6.9663 1.8464 -2.6979 21 8 3.9740 -1.4781 -0.0422 22 1 -0.3634 0.6012 0.8335 23 1 -0.3632 0.4212 -0.9374 24 1 -0.3634 -1.0224 0.1039 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4425 0.0005 29 1 2.0040 -0.4414 3.3850 30 1 2.0795 1.0694 2.4465 31 1 0.5552 0.1551 2.5409 32 1 4.2448 -1.2601 3.2231 33 1 3.4101 -2.6345 2.4266 34 1 5.5917 -3.3285 1.8755 35 1 6.2661 -1.6839 2.1003 36 1 6.4693 -3.7089 -0.4054 37 1 4.7217 -4.0238 -0.2832 38 1 5.3665 -3.1092 -1.6674 39 1 5.5642 -0.8179 -3.3857 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307037148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -72.052848 kcal Electronic energy + Delta-G solvation = -17221.742798 eV Core-core repulsion = 14742.475056 eV Total energy + Delta-G solvation = -2479.267742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.75851 -36.34530 -32.72872 -30.98744 -30.51769 -28.52101 -26.76470 -25.20888 -24.87726 -22.78915 -20.43505 -19.18137 -18.21985 -16.38011 -15.48846 -14.93382 -14.45825 -14.12216 -13.69922 -13.33199 -12.66177 -12.40590 -12.32463 -12.08936 -11.77269 -11.53864 -11.33769 -11.21053 -11.04408 -10.87776 -10.77534 -10.56701 -10.45873 -10.33909 -10.01331 -9.85679 -9.80388 -9.40902 -9.19574 -9.05204 -8.42027 -7.77421 -5.87984 -4.04542 3.31149 3.39760 3.42896 4.46463 5.01607 5.23629 5.38813 5.39830 5.60884 5.73755 5.78458 5.84797 5.90320 5.92733 6.05656 6.12377 6.24965 6.28457 6.32436 6.40915 6.44224 6.47994 6.59593 6.68929 6.73974 6.81322 6.87864 6.96383 7.01661 7.10792 7.13965 7.19629 7.56065 7.85349 8.13165 8.43541 8.72417 9.07344 9.66932 11.13022 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.010444 C = 0.008818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.462133 B = 2680.374579 C = 3174.739081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.077 4.077 5 H 0.065 0.935 6 C -0.147 4.147 7 C 0.088 3.912 8 H 0.056 0.944 9 C -0.150 4.150 10 C -0.143 4.143 11 C 0.224 3.776 12 C -0.130 4.130 13 C -0.540 4.540 14 H 0.054 0.946 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.882 3.118 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.348 6.348 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.012 0.988 38 H 0.089 0.911 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 1.251 6.645 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.095 4.095 5 H 0.083 0.917 6 C -0.204 4.204 7 C 0.029 3.971 8 H 0.074 0.926 9 C -0.188 4.188 10 C -0.181 4.181 11 C 0.187 3.813 12 C -0.187 4.187 13 C -0.577 4.577 14 H 0.072 0.928 15 C -0.123 4.123 16 N -0.496 5.496 17 Si 0.710 3.290 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 O -0.268 6.268 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.108 0.892 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.972 1.227 6.252 9.445 hybrid contribution 0.908 0.738 -0.120 1.177 sum -6.064 1.966 6.132 8.845 Atomic orbital electron populations 1.21889 0.96629 1.00925 1.00743 1.21002 0.93847 0.96368 0.99332 1.21870 1.02273 0.95965 1.00088 1.21155 0.95256 0.98719 0.94390 0.91680 1.21885 1.00591 1.00492 0.97419 1.22737 0.92337 0.95885 0.86115 0.92621 1.23174 0.97848 0.99283 0.98454 1.23133 0.96223 0.99445 0.99296 1.19582 0.81867 0.91881 0.87989 1.21778 0.97077 0.94962 1.04910 1.21489 1.16350 1.25770 0.94140 0.92772 1.24961 0.94898 0.95625 0.96776 1.69967 1.35009 1.41887 1.02698 0.86725 0.81851 0.81778 0.78685 1.19875 1.21039 1.21001 1.88999 1.33470 1.73585 1.30732 0.93305 0.93387 0.93246 0.89521 0.93749 0.93497 0.91688 0.93188 0.92416 0.92911 0.92522 0.92288 0.93116 0.92036 0.94559 0.96845 0.89224 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.81 37.16 0.33 -1.71 16 2 C -0.09 -1.51 2.59 -90.62 -0.23 -1.74 16 3 C -0.14 -2.45 8.47 37.16 0.31 -2.13 16 4 C -0.08 -1.32 1.96 -90.62 -0.18 -1.49 16 5 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 6 C -0.15 -2.06 8.34 37.16 0.31 -1.75 16 7 C 0.09 1.82 2.29 -25.68 -0.06 1.76 16 8 H 0.06 1.23 7.04 -51.93 -0.37 0.87 16 9 C -0.15 -2.83 5.98 -24.55 -0.15 -2.98 16 10 C -0.14 -3.07 6.29 -25.02 -0.16 -3.23 16 11 C 0.22 5.67 0.74 -91.20 -0.07 5.60 16 12 C -0.13 -3.23 8.44 37.16 0.31 -2.91 16 13 C -0.54 -14.88 8.19 -34.44 -0.28 -15.16 16 14 H 0.05 1.49 7.33 -52.49 -0.38 1.11 16 15 C 0.08 2.28 5.26 -17.82 -0.09 2.19 16 16 N -0.86 -24.64 10.93 55.43 0.61 -24.04 16 17 Si 0.88 21.35 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 O -0.35 -8.82 9.17 -35.23 -0.32 -9.14 16 22 H 0.05 0.62 6.86 -51.93 -0.36 0.26 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 28 H 0.06 1.27 6.78 -51.92 -0.35 0.92 16 29 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 30 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 31 H 0.05 0.65 6.71 -51.93 -0.35 0.31 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.06 1.05 7.97 -51.93 -0.41 0.63 16 34 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 35 H 0.06 1.32 7.39 -51.93 -0.38 0.93 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 2.46 6.03 -51.93 -0.31 2.14 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -28.63 295.08 -7.09 -35.72 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.85 Total: 0.24 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 0.05 Total: -23.56 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.61 Total: -24.04 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.32 Total: -9.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.63 -7.09 -35.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.331 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds