Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.53004 * 109.47052 * 119.99713 * 2 1 3 5 5 H 1.09000 * 109.47185 * 54.72036 * 4 2 1 6 6 C 1.53000 * 109.46909 * 294.72686 * 4 2 1 7 7 C 1.52994 * 109.47313 * 174.72826 * 4 2 1 8 8 H 1.09005 * 110.55323 * 67.98352 * 7 4 2 9 9 C 1.54993 * 110.75247 * 190.95664 * 7 4 2 10 10 C 1.55140 * 102.09541 * 155.67269 * 9 7 4 11 11 C 1.54102 * 104.02904 * 339.00352 * 10 9 7 12 12 C 1.52999 * 109.88136 * 238.59111 * 11 10 9 13 13 C 1.50701 * 109.87647 * 117.59155 * 11 10 9 14 14 H 1.07996 * 120.00293 * 0.29907 * 13 11 10 15 15 C 1.37888 * 120.00008 * 180.31083 * 13 11 10 16 16 N 1.31515 * 119.99830 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99879 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47450 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47358 * 119.99565 * 17 15 13 20 20 H 1.48498 * 109.46871 * 239.99497 * 17 15 13 21 21 O 1.43744 * 107.42485 * 358.09295 * 11 10 9 22 22 H 1.09003 * 109.47211 * 305.80534 * 1 2 3 23 23 H 1.09003 * 109.46551 * 65.80425 * 1 2 3 24 24 H 1.08998 * 109.47283 * 185.80428 * 1 2 3 25 25 H 1.09001 * 109.47222 * 239.99276 * 2 1 3 26 26 H 1.09001 * 109.46824 * 299.99618 * 3 2 1 27 27 H 1.08993 * 109.47384 * 59.99719 * 3 2 1 28 28 H 1.09008 * 109.46989 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47098 * 179.97438 * 6 4 2 30 30 H 1.09001 * 109.47406 * 299.99735 * 6 4 2 31 31 H 1.09002 * 109.47188 * 60.00042 * 6 4 2 32 32 H 1.08999 * 110.91151 * 273.78295 * 9 7 4 33 33 H 1.09002 * 110.91171 * 37.35800 * 9 7 4 34 34 H 1.09002 * 110.52580 * 220.40418 * 10 9 7 35 35 H 1.08999 * 110.60167 * 97.64457 * 10 9 7 36 36 H 1.09000 * 109.46948 * 299.69532 * 12 11 10 37 37 H 1.08997 * 109.47339 * 59.69354 * 12 11 10 38 38 H 1.09001 * 109.47145 * 179.69893 * 12 11 10 39 39 H 0.96993 * 119.99502 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6015 -1.7179 1.2979 6 6 1.6411 0.0726 2.4950 7 6 3.5642 -0.8370 1.1849 8 1 4.0269 0.1456 1.2777 9 6 4.0893 -1.7937 2.2855 10 6 5.4413 -2.2653 1.6883 11 6 5.2955 -1.9991 0.1775 12 6 5.4762 -3.3040 -0.6005 13 6 6.3241 -0.9913 -0.2668 14 1 7.0207 -0.5794 0.4484 15 6 6.3757 -0.5948 -1.5864 16 7 5.5276 -1.0965 -2.4574 17 14 7.6511 0.6539 -2.1373 18 1 8.4801 1.0608 -0.9743 19 1 8.5205 0.0477 -3.1774 20 1 6.9663 1.8464 -2.6979 21 8 3.9740 -1.4781 -0.0422 22 1 -0.3634 0.6012 0.8335 23 1 -0.3632 0.4212 -0.9374 24 1 -0.3634 -1.0224 0.1039 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4425 0.0005 29 1 2.0040 -0.4414 3.3850 30 1 2.0795 1.0694 2.4465 31 1 0.5552 0.1551 2.5409 32 1 4.2448 -1.2601 3.2231 33 1 3.4101 -2.6345 2.4266 34 1 5.5917 -3.3285 1.8755 35 1 6.2661 -1.6839 2.1003 36 1 6.4693 -3.7089 -0.4054 37 1 4.7217 -4.0238 -0.2832 38 1 5.3665 -3.1092 -1.6674 39 1 5.5642 -0.8179 -3.3857 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307037148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -87.575555 kcal Electronic energy + Delta-G solvation = -17222.415913 eV Core-core repulsion = 14742.475056 eV Total energy + Delta-G solvation = -2479.940857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41867 -37.84988 -34.72696 -32.67990 -32.23676 -30.06697 -28.03705 -27.28195 -26.39705 -24.32636 -22.06446 -21.03947 -19.62331 -18.41342 -17.10290 -16.59807 -16.24935 -15.64211 -15.34602 -14.96637 -14.21657 -14.00665 -13.78517 -13.64974 -13.23350 -13.02103 -12.91656 -12.81893 -12.77237 -12.60874 -12.45245 -12.26733 -12.12144 -11.94776 -11.75933 -11.41198 -11.23031 -11.01372 -10.90136 -10.79582 -10.53945 -9.69845 -7.99004 -6.22303 1.36559 1.39233 1.49066 2.42690 3.16829 3.58945 3.86246 4.04097 4.16808 4.21153 4.39655 4.41674 4.58948 4.60542 4.74042 4.79161 4.86721 4.90046 4.95226 4.98455 5.06883 5.08059 5.13258 5.15241 5.20046 5.22779 5.24995 5.37042 5.48435 5.51456 5.56278 5.66495 5.70345 5.81777 6.11118 6.35952 6.74788 7.09755 7.53406 9.00404 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.010444 C = 0.008818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.462133 B = 2680.374579 C = 3174.739081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.072 4.072 5 H 0.065 0.935 6 C -0.140 4.140 7 C 0.080 3.920 8 H 0.033 0.967 9 C -0.138 4.138 10 C -0.142 4.142 11 C 0.209 3.791 12 C -0.124 4.124 13 C -0.555 4.555 14 H 0.047 0.953 15 C 0.036 3.964 16 N -0.886 5.886 17 Si 0.940 3.060 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.284 1.284 21 O -0.377 6.377 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 1.726 8.489 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.196 4.196 4 C -0.090 4.090 5 H 0.084 0.916 6 C -0.197 4.197 7 C 0.022 3.978 8 H 0.051 0.949 9 C -0.176 4.176 10 C -0.179 4.179 11 C 0.171 3.829 12 C -0.182 4.182 13 C -0.593 4.593 14 H 0.065 0.935 15 C -0.167 4.167 16 N -0.524 5.524 17 Si 0.766 3.234 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.210 1.210 21 O -0.297 6.297 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.053 1.701 8.108 11.553 hybrid contribution 1.250 0.585 -0.701 1.548 sum -6.803 2.286 7.407 10.313 Atomic orbital electron populations 1.21808 0.93598 1.01892 1.02030 1.20945 0.96343 0.95875 0.97525 1.21812 0.99796 0.96303 1.01683 1.21146 0.92525 0.99419 0.95935 0.91618 1.21848 1.02178 0.99847 0.95817 1.22948 0.94726 0.94873 0.85247 0.94898 1.23134 0.96339 0.99470 0.98622 1.23049 0.97667 1.00441 0.96788 1.19690 0.81614 0.91213 0.90408 1.21682 0.97863 0.95627 1.03004 1.21819 1.16904 1.26320 0.94252 0.93508 1.25649 0.96668 0.97351 0.96989 1.70111 1.36461 1.43044 1.02745 0.85804 0.79695 0.79520 0.78343 1.19296 1.20412 1.21038 1.88957 1.33186 1.74044 1.33552 0.90875 0.93021 0.92683 0.94419 0.93402 0.90603 0.95402 0.91926 0.92488 0.90493 0.89862 0.90666 0.91618 0.92514 0.93976 0.95348 0.92270 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.81 71.98 0.63 -2.89 16 2 C -0.09 -3.02 2.59 -10.79 -0.03 -3.05 16 3 C -0.14 -4.64 8.47 71.98 0.61 -4.03 16 4 C -0.07 -2.35 1.96 -10.79 -0.02 -2.37 16 5 H 0.07 2.14 8.02 -2.39 -0.02 2.12 16 6 C -0.14 -3.44 8.34 71.98 0.60 -2.84 16 7 C 0.08 3.29 2.29 31.27 0.07 3.36 16 8 H 0.03 1.48 7.04 -2.38 -0.02 1.47 16 9 C -0.14 -4.92 5.98 32.01 0.19 -4.73 16 10 C -0.14 -5.93 6.29 31.70 0.20 -5.73 16 11 C 0.21 10.67 0.74 -11.17 -0.01 10.66 16 12 C -0.12 -6.26 8.44 71.98 0.61 -5.65 16 13 C -0.55 -31.22 8.19 25.60 0.21 -31.01 16 14 H 0.05 2.62 7.33 -2.91 -0.02 2.60 16 15 C 0.04 2.02 5.26 84.66 0.45 2.46 16 16 N -0.89 -52.54 10.93 21.45 0.23 -52.31 16 17 Si 0.94 44.67 29.54 68.60 2.03 46.70 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 O -0.38 -19.54 9.17 -148.98 -1.37 -20.90 16 22 H 0.07 1.55 6.86 -2.39 -0.02 1.53 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.64 7.44 -2.39 -0.02 1.62 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.06 6.34 -2.39 -0.02 2.04 16 28 H 0.03 1.11 6.78 -2.38 -0.02 1.09 16 29 H 0.06 1.40 7.65 -2.39 -0.02 1.38 16 30 H 0.06 1.41 6.34 -2.39 -0.02 1.40 16 31 H 0.08 1.55 6.71 -2.39 -0.02 1.53 16 32 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 33 H 0.07 2.44 7.97 -2.39 -0.02 2.42 16 34 H 0.07 2.51 7.70 -2.39 -0.02 2.49 16 35 H 0.06 2.38 7.39 -2.39 -0.02 2.37 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 3.34 6.03 -2.39 -0.01 3.33 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -63.34 295.08 5.40 -57.94 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.99 Total: 14.38 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 3.51 Total: -45.81 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.23 Total: -52.31 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.37 Total: -20.90 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.34 5.40 -57.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.637 kcal (2) G-P(sol) polarization free energy of solvation -63.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds