Wall clock time and date at job start Mon Mar 30 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 C 1.52998 * 109.47003 * 119.99887 * 2 1 3 5 5 H 1.08997 * 109.47451 * 299.99988 * 4 2 1 6 6 C 1.53002 * 109.47003 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.47108 * 60.00129 * 4 2 1 8 8 H 1.08992 * 110.55018 * 307.88034 * 7 4 2 9 9 C 1.54998 * 110.61668 * 184.99693 * 7 4 2 10 10 C 1.54819 * 102.08844 * 204.47615 * 9 7 4 11 11 C 1.54092 * 104.19077 * 20.88240 * 10 9 7 12 12 C 1.52999 * 109.87968 * 242.45526 * 11 10 9 13 13 C 1.50694 * 109.88051 * 121.45346 * 11 10 9 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 11 10 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 O 1.43752 * 107.29419 * 2.03113 * 11 10 9 22 22 H 1.08997 * 109.47007 * 299.99853 * 1 2 3 23 23 H 1.08992 * 109.46814 * 59.99845 * 1 2 3 24 24 H 1.09003 * 109.46614 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47007 * 240.00146 * 2 1 3 26 26 H 1.09000 * 109.46850 * 300.00001 * 3 2 1 27 27 H 1.08997 * 109.47079 * 60.00191 * 3 2 1 28 28 H 1.08998 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47338 * 59.99932 * 6 4 2 30 30 H 1.09000 * 109.47341 * 180.02562 * 6 4 2 31 31 H 1.09006 * 109.47180 * 300.00300 * 6 4 2 32 32 H 1.08996 * 110.90649 * 86.27878 * 9 7 4 33 33 H 1.08998 * 110.90646 * 322.66907 * 9 7 4 34 34 H 1.09003 * 110.48386 * 262.20269 * 10 9 7 35 35 H 1.09002 * 110.59385 * 139.61543 * 10 9 7 36 36 H 1.08998 * 109.46843 * 299.69431 * 12 11 10 37 37 H 1.09005 * 109.47018 * 59.69331 * 12 11 10 38 38 H 1.08993 * 109.47020 * 179.69126 * 12 11 10 39 39 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2496 7 6 1.5300 -2.1638 1.2493 8 1 0.4493 -2.1875 1.1093 9 6 1.9261 -2.8827 2.5640 10 6 1.9218 -4.3700 2.1343 11 6 2.0689 -4.3207 0.6012 12 6 0.8312 -4.9302 -0.0602 13 6 3.3008 -5.0796 0.1800 14 1 3.9240 -5.5534 0.9240 15 6 3.6330 -5.1683 -1.1552 16 7 2.8745 -4.5910 -2.0613 17 14 5.1604 -6.1084 -1.6774 18 1 6.3241 -5.1863 -1.7047 19 1 5.4208 -7.2055 -0.7110 20 1 4.9506 -6.6809 -3.0314 21 8 2.1953 -2.9382 0.2283 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 3.9330 0.3071 1.2498 30 1 3.9334 -1.2349 2.1393 31 1 3.9338 -1.2342 0.3595 32 1 1.1872 -2.7011 3.3445 33 1 2.9193 -2.5753 2.8914 34 1 0.9807 -4.8446 2.4122 35 1 2.7623 -4.9008 2.5814 36 1 0.7261 -5.9688 0.2534 37 1 -0.0541 -4.3690 0.2389 38 1 0.9398 -4.8869 -1.1438 39 1 3.1084 -4.6530 -3.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307037149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:12 Heat of formation + Delta-G solvation = -70.679249 kcal Electronic energy + Delta-G solvation = -17209.769017 eV Core-core repulsion = 14730.560839 eV Total energy + Delta-G solvation = -2479.208178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.85425 -36.19411 -32.80421 -30.89477 -30.63681 -28.63644 -27.06848 -25.35035 -24.43881 -22.58985 -20.22126 -19.51354 -18.48803 -16.72280 -15.24950 -14.76153 -14.26217 -14.11240 -13.63785 -13.31276 -12.78686 -12.73175 -12.33982 -12.09547 -11.82933 -11.67374 -11.36847 -11.15627 -10.85901 -10.81302 -10.69513 -10.53722 -10.41914 -10.25100 -10.08126 -10.04168 -9.81027 -9.37288 -9.25988 -8.97035 -8.44457 -7.82414 -5.90383 -4.05354 3.33271 3.39941 3.42413 4.46260 5.01396 5.19583 5.35628 5.37685 5.59383 5.66130 5.80901 5.85619 5.89291 5.98511 6.06545 6.11798 6.16477 6.27675 6.32603 6.36481 6.44567 6.48911 6.66351 6.70395 6.74237 6.81235 6.88099 6.89724 6.97025 7.03777 7.13342 7.27467 7.39277 7.83337 8.19021 8.44218 8.68703 9.10493 9.64433 11.11726 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.009393 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.367817 B = 2980.094274 C = 3240.250408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.072 4.072 5 H 0.061 0.939 6 C -0.141 4.141 7 C 0.068 3.932 8 H 0.049 0.951 9 C -0.151 4.151 10 C -0.142 4.142 11 C 0.226 3.774 12 C -0.149 4.149 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.080 3.920 16 N -0.860 5.860 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.275 1.275 20 H -0.287 1.287 21 O -0.335 6.335 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.008 0.992 38 H 0.090 0.910 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 7.482 5.349 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.090 4.090 5 H 0.079 0.921 6 C -0.198 4.198 7 C 0.010 3.990 8 H 0.067 0.933 9 C -0.189 4.189 10 C -0.180 4.180 11 C 0.189 3.811 12 C -0.206 4.206 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.125 4.125 16 N -0.497 5.497 17 Si 0.714 3.286 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.212 1.212 21 O -0.254 6.254 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.108 0.892 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.898 7.582 4.956 9.511 hybrid contribution 0.652 -0.613 -0.064 0.897 sum -2.246 6.969 4.892 8.806 Atomic orbital electron populations 1.21869 0.96069 1.01912 1.00447 1.21086 0.95075 0.95163 0.99614 1.21891 1.01142 0.96586 1.00648 1.21091 0.96459 0.94608 0.96882 0.92058 1.21779 0.94982 0.99874 1.03153 1.22972 0.95765 0.91510 0.88801 0.93297 1.23163 1.00886 0.97002 0.97842 1.23057 1.00210 0.94918 0.99788 1.19589 0.94176 0.80355 0.87009 1.22169 0.95529 0.97478 1.05462 1.21078 1.09823 1.32752 0.92149 0.92310 1.25001 0.96158 0.94512 0.96816 1.69959 1.36881 1.42058 1.00770 0.86709 0.83872 0.80161 0.77880 1.20623 1.19944 1.21243 1.89249 1.74765 1.17841 1.43516 0.93612 0.93400 0.92086 0.89931 0.93405 0.93475 0.92547 0.93971 0.93236 0.90896 0.92873 0.91338 0.93305 0.91926 0.94888 0.97331 0.89151 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.87 37.16 0.33 -1.84 16 2 C -0.09 -1.49 2.45 -90.62 -0.22 -1.71 16 3 C -0.15 -1.98 8.84 37.16 0.33 -1.65 16 4 C -0.07 -1.23 1.89 -90.62 -0.17 -1.40 16 5 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.14 -2.46 8.41 37.16 0.31 -2.15 16 7 C 0.07 1.37 2.77 -25.67 -0.07 1.30 16 8 H 0.05 0.98 6.12 -51.93 -0.32 0.66 16 9 C -0.15 -2.86 6.50 -24.72 -0.16 -3.02 16 10 C -0.14 -3.05 6.26 -25.20 -0.16 -3.20 16 11 C 0.23 5.71 0.74 -91.20 -0.07 5.64 16 12 C -0.15 -3.68 8.39 37.16 0.31 -3.37 16 13 C -0.52 -14.44 8.26 -34.44 -0.28 -14.72 16 14 H 0.06 1.61 7.33 -52.49 -0.38 1.23 16 15 C 0.08 2.23 5.26 -17.82 -0.09 2.14 16 16 N -0.86 -24.71 10.93 55.43 0.61 -24.11 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 O -0.33 -8.37 8.93 -35.23 -0.31 -8.69 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.00 6.28 -51.93 -0.33 0.68 16 25 H 0.08 1.61 8.06 -51.93 -0.42 1.20 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 29 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 30 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 31 H 0.07 1.52 7.50 -51.93 -0.39 1.13 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.27 6.19 -51.93 -0.32 0.95 16 34 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 35 H 0.06 1.35 7.40 -51.93 -0.38 0.96 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 2.48 6.01 -51.93 -0.31 2.16 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 294.60 15.07 4.44 4.44 Total: -1.00 -28.58 294.60 -7.01 -35.58 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.77 Total: 0.42 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 0.05 Total: -24.00 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.61 Total: -24.11 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.31 Total: -8.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.58 -7.01 -35.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.096 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds