Wall clock time and date at job start Mon Mar 30 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 C 1.52998 * 109.47003 * 119.99887 * 2 1 3 5 5 H 1.08997 * 109.47451 * 299.99988 * 4 2 1 6 6 C 1.53002 * 109.47003 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.47108 * 60.00129 * 4 2 1 8 8 H 1.08992 * 110.55018 * 307.88034 * 7 4 2 9 9 C 1.54998 * 110.61668 * 184.99693 * 7 4 2 10 10 C 1.54819 * 102.08844 * 204.47615 * 9 7 4 11 11 C 1.54092 * 104.19077 * 20.88240 * 10 9 7 12 12 C 1.52999 * 109.87968 * 242.45526 * 11 10 9 13 13 C 1.50694 * 109.88051 * 121.45346 * 11 10 9 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 11 10 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 O 1.43752 * 107.29419 * 2.03113 * 11 10 9 22 22 H 1.08997 * 109.47007 * 299.99853 * 1 2 3 23 23 H 1.08992 * 109.46814 * 59.99845 * 1 2 3 24 24 H 1.09003 * 109.46614 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47007 * 240.00146 * 2 1 3 26 26 H 1.09000 * 109.46850 * 300.00001 * 3 2 1 27 27 H 1.08997 * 109.47079 * 60.00191 * 3 2 1 28 28 H 1.08998 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47338 * 59.99932 * 6 4 2 30 30 H 1.09000 * 109.47341 * 180.02562 * 6 4 2 31 31 H 1.09006 * 109.47180 * 300.00300 * 6 4 2 32 32 H 1.08996 * 110.90649 * 86.27878 * 9 7 4 33 33 H 1.08998 * 110.90646 * 322.66907 * 9 7 4 34 34 H 1.09003 * 110.48386 * 262.20269 * 10 9 7 35 35 H 1.09002 * 110.59385 * 139.61543 * 10 9 7 36 36 H 1.08998 * 109.46843 * 299.69431 * 12 11 10 37 37 H 1.09005 * 109.47018 * 59.69331 * 12 11 10 38 38 H 1.08993 * 109.47020 * 179.69126 * 12 11 10 39 39 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2496 7 6 1.5300 -2.1638 1.2493 8 1 0.4493 -2.1875 1.1093 9 6 1.9261 -2.8827 2.5640 10 6 1.9218 -4.3700 2.1343 11 6 2.0689 -4.3207 0.6012 12 6 0.8312 -4.9302 -0.0602 13 6 3.3008 -5.0796 0.1800 14 1 3.9240 -5.5534 0.9240 15 6 3.6330 -5.1683 -1.1552 16 7 2.8745 -4.5910 -2.0613 17 14 5.1604 -6.1084 -1.6774 18 1 6.3241 -5.1863 -1.7047 19 1 5.4208 -7.2055 -0.7110 20 1 4.9506 -6.6809 -3.0314 21 8 2.1953 -2.9382 0.2283 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 3.9330 0.3071 1.2498 30 1 3.9334 -1.2349 2.1393 31 1 3.9338 -1.2342 0.3595 32 1 1.1872 -2.7011 3.3445 33 1 2.9193 -2.5753 2.8914 34 1 0.9807 -4.8446 2.4122 35 1 2.7623 -4.9008 2.5814 36 1 0.7261 -5.9688 0.2534 37 1 -0.0541 -4.3690 0.2389 38 1 0.9398 -4.8869 -1.1438 39 1 3.1084 -4.6530 -3.0006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307037149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:11 Heat of formation + Delta-G solvation = -86.093478 kcal Electronic energy + Delta-G solvation = -17210.437428 eV Core-core repulsion = 14730.560839 eV Total energy + Delta-G solvation = -2479.876589 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49963 -37.66323 -34.77006 -32.59393 -32.29028 -30.25098 -28.37092 -27.34284 -26.05168 -24.08615 -21.70225 -21.31992 -19.96249 -18.69134 -16.86563 -16.68502 -15.90157 -15.42314 -15.18257 -15.00496 -14.45508 -14.29086 -14.06717 -13.54649 -13.24101 -13.12221 -12.92464 -12.80351 -12.68717 -12.47958 -12.28559 -12.17242 -12.04031 -11.92181 -11.76416 -11.48810 -11.39833 -10.91582 -10.85072 -10.82430 -10.54150 -9.68163 -8.00794 -6.22596 1.40028 1.41256 1.50407 2.43851 3.13862 3.67076 3.86329 4.05556 4.12485 4.23942 4.32595 4.38864 4.51128 4.69242 4.77414 4.78810 4.85624 4.91692 4.94124 4.96117 5.05180 5.05857 5.11428 5.11684 5.17799 5.21146 5.38384 5.41877 5.44891 5.46822 5.51475 5.66691 5.68030 5.80194 6.15927 6.40404 6.68433 7.18198 7.51516 8.99921 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.009393 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.367817 B = 2980.094274 C = 3240.250408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.068 4.068 5 H 0.094 0.906 6 C -0.134 4.134 7 C 0.060 3.940 8 H 0.050 0.950 9 C -0.142 4.142 10 C -0.141 4.141 11 C 0.212 3.788 12 C -0.141 4.141 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.033 3.967 16 N -0.888 5.888 17 Si 0.946 3.054 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.282 1.282 21 O -0.366 6.366 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.024 0.976 38 H 0.059 0.941 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 8.788 7.010 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.087 4.087 5 H 0.112 0.888 6 C -0.191 4.191 7 C 0.002 3.998 8 H 0.067 0.933 9 C -0.179 4.179 10 C -0.178 4.178 11 C 0.174 3.826 12 C -0.199 4.199 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.169 4.169 16 N -0.525 5.525 17 Si 0.772 3.228 18 H -0.206 1.206 19 H -0.191 1.191 20 H -0.208 1.208 21 O -0.285 6.285 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.153 8.885 6.628 11.524 hybrid contribution 0.694 -1.000 -0.574 1.346 sum -2.459 7.885 6.054 10.240 Atomic orbital electron populations 1.21824 0.94858 1.01006 1.02164 1.21036 0.96121 0.96499 0.97330 1.21829 1.00956 0.94603 1.02228 1.21136 0.95957 0.93082 0.98498 0.88802 1.21703 0.95502 1.00959 1.00962 1.23247 0.95633 0.92804 0.88160 0.93259 1.23135 1.02116 0.94622 0.98034 1.22974 1.00683 0.97060 0.97129 1.19658 0.93000 0.80517 0.89407 1.22045 0.96468 0.97963 1.03408 1.21458 1.10829 1.33253 0.92349 0.92890 1.25711 0.98828 0.95442 0.96954 1.70107 1.38321 1.43304 1.00769 0.85769 0.80406 0.79030 0.77642 1.20609 1.19114 1.20796 1.89190 1.75660 1.18024 1.45665 0.91033 0.92542 0.94261 0.94514 0.92575 0.91149 0.92817 0.91252 0.93097 0.95288 0.89426 0.91116 0.91852 0.92545 0.94596 0.95730 0.92256 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.87 71.98 0.64 -3.32 16 2 C -0.09 -2.88 2.45 -10.79 -0.03 -2.90 16 3 C -0.14 -3.41 8.84 71.98 0.64 -2.78 16 4 C -0.07 -2.21 1.89 -10.79 -0.02 -2.23 16 5 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 6 C -0.13 -4.55 8.41 71.98 0.61 -3.95 16 7 C 0.06 2.32 2.77 31.28 0.09 2.41 16 8 H 0.05 1.91 6.12 -2.39 -0.01 1.90 16 9 C -0.14 -5.02 6.50 31.90 0.21 -4.81 16 10 C -0.14 -5.88 6.26 31.58 0.20 -5.69 16 11 C 0.21 10.81 0.74 -11.17 -0.01 10.80 16 12 C -0.14 -7.09 8.39 71.98 0.60 -6.49 16 13 C -0.54 -30.60 8.26 25.60 0.21 -30.38 16 14 H 0.05 2.96 7.33 -2.91 -0.02 2.93 16 15 C 0.03 1.86 5.26 84.66 0.45 2.31 16 16 N -0.89 -52.66 10.93 21.45 0.23 -52.43 16 17 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 O -0.37 -18.66 8.93 -148.98 -1.33 -19.99 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.25 6.28 -2.39 -0.01 1.24 16 25 H 0.04 1.48 8.06 -2.39 -0.02 1.46 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.33 6.43 -2.39 -0.02 1.32 16 29 H 0.07 1.93 6.43 -2.39 -0.02 1.92 16 30 H 0.05 1.68 6.37 -2.39 -0.02 1.66 16 31 H 0.03 1.21 7.50 -2.38 -0.02 1.20 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.47 6.19 -2.39 -0.01 2.45 16 34 H 0.06 2.41 7.70 -2.39 -0.02 2.40 16 35 H 0.06 2.39 7.40 -2.39 -0.02 2.37 16 36 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.06 3.35 6.01 -2.39 -0.01 3.34 16 39 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -63.07 294.60 5.50 -57.56 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.00 Total: 15.20 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 3.58 Total: -47.03 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.23 Total: -52.43 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.33 Total: -19.99 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.07 5.50 -57.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.529 kcal (2) G-P(sol) polarization free energy of solvation -63.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds