Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.52991 * 109.47113 * 120.00132 * 2 1 3 5 5 H 1.09001 * 109.47387 * 299.99756 * 4 2 1 6 6 C 1.53002 * 109.47113 * 180.02562 * 4 2 1 7 7 C 1.53004 * 109.47353 * 60.00155 * 4 2 1 8 8 H 1.09002 * 110.27448 * 305.69936 * 7 4 2 9 9 C 1.54941 * 110.31108 * 183.60934 * 7 4 2 10 10 C 1.55303 * 100.94263 * 204.54142 * 9 7 4 11 11 C 1.54381 * 102.25289 * 34.13291 * 10 9 7 12 12 C 1.53003 * 109.82962 * 98.15637 * 11 10 9 13 13 C 1.50702 * 109.83129 * 219.13328 * 11 10 9 14 14 H 1.08000 * 119.99659 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00000 * 180.02562 * 13 11 10 16 16 N 1.31513 * 119.99827 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00013 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47088 * 89.99438 * 17 15 13 19 19 H 1.48492 * 109.47188 * 209.99922 * 17 15 13 20 20 H 1.48499 * 109.46796 * 329.99728 * 17 15 13 21 21 O 1.43234 * 107.58697 * 338.64393 * 11 10 9 22 22 H 1.08997 * 109.47328 * 59.99866 * 1 2 3 23 23 H 1.09008 * 109.46691 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47428 * 299.99494 * 1 2 3 25 25 H 1.09001 * 109.46795 * 240.00250 * 2 1 3 26 26 H 1.09002 * 109.46807 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47247 * 300.00183 * 3 2 1 28 28 H 1.09003 * 109.46967 * 60.00018 * 3 2 1 29 29 H 1.09003 * 109.47304 * 300.00092 * 6 4 2 30 30 H 1.09000 * 109.46870 * 59.99856 * 6 4 2 31 31 H 1.08997 * 109.47328 * 180.02562 * 6 4 2 32 32 H 1.09004 * 111.12850 * 322.45764 * 9 7 4 33 33 H 1.09003 * 111.12860 * 86.62271 * 9 7 4 34 34 H 1.09005 * 110.84934 * 152.32029 * 10 9 7 35 35 H 1.09002 * 110.84803 * 275.74057 * 10 9 7 36 36 H 1.09001 * 109.46865 * 60.00391 * 12 11 10 37 37 H 1.09004 * 109.46811 * 179.97438 * 12 11 10 38 38 H 1.08989 * 109.47425 * 299.99861 * 12 11 10 39 39 H 0.97008 * 119.99571 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 1.5300 -2.1638 1.2492 8 1 0.4449 -2.1808 1.1476 9 6 1.9597 -2.8861 2.5508 10 6 1.9411 -4.3678 2.0857 11 6 2.3929 -4.2548 0.6138 12 6 3.8874 -4.5639 0.5044 13 6 1.6063 -5.2177 -0.2378 14 1 0.8576 -5.8512 0.2145 15 6 1.8431 -5.2905 -1.5941 16 7 2.7551 -4.5193 -2.1447 17 14 0.8685 -6.4845 -2.6496 18 1 -0.3581 -5.8143 -3.1512 19 1 1.7000 -6.9207 -3.8000 20 1 0.4888 -7.6677 -1.8365 21 8 2.1421 -2.9111 0.1860 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.9338 -1.2342 0.3595 30 1 3.9329 0.3071 1.2497 31 1 3.9334 -1.2349 2.1392 32 1 2.9612 -2.5829 2.8562 33 1 1.2389 -2.7164 3.3507 34 1 2.6469 -4.9647 2.6634 35 1 0.9359 -4.7836 2.1553 36 1 4.0761 -5.5761 0.8624 37 1 4.1999 -4.4830 -0.5367 38 1 4.4506 -3.8536 1.1095 39 1 2.9214 -4.5703 -3.0991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307037150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -70.570606 kcal Electronic energy + Delta-G solvation = -17237.238056 eV Core-core repulsion = 14758.034589 eV Total energy + Delta-G solvation = -2479.203467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.87782 -36.14935 -32.78669 -30.94467 -30.59516 -28.80314 -26.96049 -25.19486 -24.43414 -22.64247 -20.33204 -19.52059 -18.49846 -16.35079 -15.57587 -14.76353 -14.25741 -14.14747 -13.80366 -13.20955 -13.03335 -12.43561 -12.09633 -11.91659 -11.87381 -11.72042 -11.33238 -11.04197 -10.93761 -10.85322 -10.79237 -10.59884 -10.44958 -10.36087 -10.01295 -9.96963 -9.87257 -9.47409 -9.21982 -8.97738 -8.40575 -7.68189 -5.87629 -4.03619 3.33687 3.40434 3.42947 4.47608 5.00517 5.22574 5.37175 5.40025 5.56857 5.62164 5.78696 5.82749 5.90850 6.01163 6.07034 6.11351 6.19641 6.24249 6.32703 6.37229 6.44906 6.56956 6.62395 6.64175 6.74012 6.80844 6.83833 6.91445 7.01053 7.05356 7.12576 7.20452 7.53545 7.85898 8.18826 8.46446 8.75867 9.16357 9.67418 11.13712 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.009741 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.126016 B = 2873.616593 C = 3277.655247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.079 4.079 5 H 0.060 0.940 6 C -0.143 4.143 7 C 0.080 3.920 8 H 0.052 0.948 9 C -0.157 4.157 10 C -0.141 4.141 11 C 0.230 3.770 12 C -0.138 4.138 13 C -0.533 4.533 14 H 0.055 0.945 15 C 0.082 3.918 16 N -0.860 5.860 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 O -0.343 6.343 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.089 0.911 38 H 0.011 0.989 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 7.526 6.057 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.097 4.097 5 H 0.079 0.921 6 C -0.200 4.200 7 C 0.022 3.978 8 H 0.070 0.930 9 C -0.195 4.195 10 C -0.179 4.179 11 C 0.193 3.807 12 C -0.195 4.195 13 C -0.571 4.571 14 H 0.074 0.926 15 C -0.123 4.123 16 N -0.496 5.496 17 Si 0.712 3.288 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 O -0.262 6.262 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.108 0.892 38 H 0.030 0.970 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.658 7.643 5.677 9.544 hybrid contribution -0.673 -0.759 -0.340 1.070 sum -1.331 6.884 5.337 8.812 Atomic orbital electron populations 1.21867 0.96037 1.02124 1.00307 1.21057 0.95143 0.94971 0.99609 1.21899 1.01031 0.96720 1.00621 1.21227 0.96188 0.95362 0.96944 0.92137 1.21818 0.95326 1.00083 1.02725 1.22753 0.96380 0.90968 0.87748 0.93017 1.23336 1.00876 0.97274 0.97998 1.23203 1.00947 0.94611 0.99152 1.19573 0.92341 0.81035 0.87780 1.21968 0.97009 0.96937 1.03611 1.21304 1.21795 1.20950 0.93075 0.92632 1.24968 0.94543 0.94835 0.97941 1.69955 1.31294 1.37388 1.10994 0.86747 0.80285 0.81549 0.80232 1.20675 1.21244 1.20000 1.88706 1.80022 1.23429 1.34084 0.93498 0.91827 0.93710 0.89849 0.92634 0.93425 0.93537 0.91051 0.93825 0.93434 0.91392 0.92443 0.92548 0.92080 0.94920 0.89226 0.97000 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.86 37.16 0.33 -1.94 16 2 C -0.09 -1.48 2.43 -90.62 -0.22 -1.70 16 3 C -0.15 -1.99 8.84 37.16 0.33 -1.66 16 4 C -0.08 -1.33 1.88 -90.62 -0.17 -1.50 16 5 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.14 -2.40 8.42 37.16 0.31 -2.08 16 7 C 0.08 1.61 2.88 -25.70 -0.07 1.54 16 8 H 0.05 1.07 6.20 -51.93 -0.32 0.75 16 9 C -0.16 -2.91 6.47 -24.49 -0.16 -3.06 16 10 C -0.14 -3.00 6.07 -24.79 -0.15 -3.15 16 11 C 0.23 5.77 0.82 -91.05 -0.07 5.70 16 12 C -0.14 -3.38 8.51 37.16 0.32 -3.07 16 13 C -0.53 -14.83 8.23 -34.44 -0.28 -15.12 16 14 H 0.06 1.53 7.52 -52.49 -0.39 1.14 16 15 C 0.08 2.29 5.26 -17.82 -0.09 2.20 16 16 N -0.86 -24.74 10.92 55.43 0.61 -24.13 16 17 Si 0.88 21.44 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 O -0.34 -8.55 8.66 -35.23 -0.31 -8.85 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.10 6.32 -51.92 -0.33 0.78 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.66 7.95 -51.93 -0.41 1.25 16 26 H 0.05 0.75 6.43 -51.93 -0.33 0.41 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.41 7.55 -51.93 -0.39 1.02 16 30 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 31 H 0.05 0.77 6.28 -51.93 -0.33 0.45 16 32 H 0.07 1.20 6.10 -51.93 -0.32 0.89 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 35 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -28.62 294.82 -7.01 -35.63 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.79 Total: 0.36 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 0.06 Total: -23.86 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.61 Total: -24.13 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.31 Total: -8.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.62 -7.01 -35.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.942 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds