Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.52991 * 109.47113 * 120.00132 * 2 1 3 5 5 H 1.09001 * 109.47387 * 299.99756 * 4 2 1 6 6 C 1.53002 * 109.47113 * 180.02562 * 4 2 1 7 7 C 1.53004 * 109.47353 * 60.00155 * 4 2 1 8 8 H 1.09002 * 110.27448 * 305.69936 * 7 4 2 9 9 C 1.54941 * 110.31108 * 183.60934 * 7 4 2 10 10 C 1.55303 * 100.94263 * 204.54142 * 9 7 4 11 11 C 1.54381 * 102.25289 * 34.13291 * 10 9 7 12 12 C 1.53003 * 109.82962 * 98.15637 * 11 10 9 13 13 C 1.50702 * 109.83129 * 219.13328 * 11 10 9 14 14 H 1.08000 * 119.99659 * 359.97438 * 13 11 10 15 15 C 1.37876 * 120.00000 * 180.02562 * 13 11 10 16 16 N 1.31513 * 119.99827 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00013 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47088 * 89.99438 * 17 15 13 19 19 H 1.48492 * 109.47188 * 209.99922 * 17 15 13 20 20 H 1.48499 * 109.46796 * 329.99728 * 17 15 13 21 21 O 1.43234 * 107.58697 * 338.64393 * 11 10 9 22 22 H 1.08997 * 109.47328 * 59.99866 * 1 2 3 23 23 H 1.09008 * 109.46691 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47428 * 299.99494 * 1 2 3 25 25 H 1.09001 * 109.46795 * 240.00250 * 2 1 3 26 26 H 1.09002 * 109.46807 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47247 * 300.00183 * 3 2 1 28 28 H 1.09003 * 109.46967 * 60.00018 * 3 2 1 29 29 H 1.09003 * 109.47304 * 300.00092 * 6 4 2 30 30 H 1.09000 * 109.46870 * 59.99856 * 6 4 2 31 31 H 1.08997 * 109.47328 * 180.02562 * 6 4 2 32 32 H 1.09004 * 111.12850 * 322.45764 * 9 7 4 33 33 H 1.09003 * 111.12860 * 86.62271 * 9 7 4 34 34 H 1.09005 * 110.84934 * 152.32029 * 10 9 7 35 35 H 1.09002 * 110.84803 * 275.74057 * 10 9 7 36 36 H 1.09001 * 109.46865 * 60.00391 * 12 11 10 37 37 H 1.09004 * 109.46811 * 179.97438 * 12 11 10 38 38 H 1.08989 * 109.47425 * 299.99861 * 12 11 10 39 39 H 0.97008 * 119.99571 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 1.5300 -2.1638 1.2492 8 1 0.4449 -2.1808 1.1476 9 6 1.9597 -2.8861 2.5508 10 6 1.9411 -4.3678 2.0857 11 6 2.3929 -4.2548 0.6138 12 6 3.8874 -4.5639 0.5044 13 6 1.6063 -5.2177 -0.2378 14 1 0.8576 -5.8512 0.2145 15 6 1.8431 -5.2905 -1.5941 16 7 2.7551 -4.5193 -2.1447 17 14 0.8685 -6.4845 -2.6496 18 1 -0.3581 -5.8143 -3.1512 19 1 1.7000 -6.9207 -3.8000 20 1 0.4888 -7.6677 -1.8365 21 8 2.1421 -2.9111 0.1860 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.9338 -1.2342 0.3595 30 1 3.9329 0.3071 1.2497 31 1 3.9334 -1.2349 2.1392 32 1 2.9612 -2.5829 2.8562 33 1 1.2389 -2.7164 3.3507 34 1 2.6469 -4.9647 2.6634 35 1 0.9359 -4.7836 2.1553 36 1 4.0761 -5.5761 0.8624 37 1 4.1999 -4.4830 -0.5367 38 1 4.4506 -3.8536 1.1095 39 1 2.9214 -4.5703 -3.0991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307037150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -85.988134 kcal Electronic energy + Delta-G solvation = -17237.906610 eV Core-core repulsion = 14758.034589 eV Total energy + Delta-G solvation = -2479.872021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51436 -37.62533 -34.75766 -32.66004 -32.22868 -30.39287 -28.24601 -27.27898 -25.97338 -24.15182 -21.82116 -21.31485 -19.98168 -18.36472 -17.18325 -16.64332 -15.92835 -15.48009 -15.32373 -14.97940 -14.49725 -14.03188 -13.84495 -13.37704 -13.33492 -13.01716 -12.91572 -12.82274 -12.74288 -12.58118 -12.31412 -12.22376 -12.15402 -11.94613 -11.73083 -11.46390 -11.38614 -10.99785 -10.83591 -10.79157 -10.51007 -9.54837 -7.98561 -6.21688 1.39137 1.40354 1.49475 2.43972 3.15232 3.62084 3.89559 4.00984 4.10914 4.20246 4.35802 4.40051 4.54395 4.72202 4.73453 4.78309 4.85279 4.91337 4.98911 5.00653 5.04640 5.06565 5.11768 5.13475 5.18454 5.21251 5.30493 5.45451 5.47841 5.50245 5.53578 5.67180 5.69542 5.84563 6.17918 6.40041 6.73839 7.26083 7.55042 9.00863 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.009741 C = 0.008541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.126016 B = 2873.616593 C = 3277.655247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.074 4.074 5 H 0.092 0.908 6 C -0.136 4.136 7 C 0.069 3.931 8 H 0.042 0.958 9 C -0.144 4.144 10 C -0.140 4.140 11 C 0.216 3.784 12 C -0.129 4.129 13 C -0.555 4.555 14 H 0.049 0.951 15 C 0.035 3.965 16 N -0.886 5.886 17 Si 0.943 3.057 18 H -0.281 1.281 19 H -0.282 1.282 20 H -0.268 1.268 21 O -0.372 6.372 22 H 0.053 0.947 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 8.757 7.701 11.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.195 4.195 4 C -0.092 4.092 5 H 0.110 0.890 6 C -0.193 4.193 7 C 0.010 3.990 8 H 0.059 0.941 9 C -0.181 4.181 10 C -0.178 4.178 11 C 0.178 3.822 12 C -0.186 4.186 13 C -0.593 4.593 14 H 0.067 0.933 15 C -0.168 4.168 16 N -0.524 5.524 17 Si 0.769 3.231 18 H -0.207 1.207 19 H -0.208 1.208 20 H -0.192 1.192 21 O -0.292 6.292 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.169 8.871 7.330 11.567 hybrid contribution -0.532 -1.126 -0.844 1.505 sum -1.701 7.745 6.486 10.244 Atomic orbital electron populations 1.21822 0.95278 1.00846 1.01972 1.21013 0.95825 0.96510 0.97540 1.21828 1.01054 0.94545 1.02109 1.21237 0.96216 0.93470 0.98267 0.89003 1.21749 0.95200 1.01288 1.01068 1.23017 0.95798 0.92624 0.87517 0.94063 1.23292 1.02423 0.94569 0.97817 1.23112 1.00703 0.96985 0.96972 1.19633 0.91957 0.80915 0.89669 1.21828 0.97449 0.97542 1.01818 1.21710 1.21909 1.21703 0.93952 0.93323 1.25673 0.95492 0.96414 0.99185 1.70106 1.32541 1.38753 1.10960 0.85816 0.78839 0.79733 0.78709 1.20681 1.20753 1.19240 1.88652 1.80453 1.23521 1.36569 0.92778 0.94532 0.91082 0.94513 0.92557 0.92762 0.91229 0.94964 0.91206 0.92717 0.90209 0.89370 0.91261 0.92731 0.94608 0.92401 0.95345 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.86 71.98 0.64 -3.59 16 2 C -0.09 -2.91 2.43 -10.79 -0.03 -2.93 16 3 C -0.14 -3.42 8.84 71.98 0.64 -2.79 16 4 C -0.07 -2.35 1.88 -10.79 -0.02 -2.37 16 5 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 6 C -0.14 -4.34 8.42 71.98 0.61 -3.74 16 7 C 0.07 2.70 2.88 31.26 0.09 2.79 16 8 H 0.04 1.70 6.20 -2.39 -0.01 1.68 16 9 C -0.14 -4.95 6.47 32.05 0.21 -4.74 16 10 C -0.14 -5.79 6.07 31.85 0.19 -5.60 16 11 C 0.22 10.94 0.82 -11.07 -0.01 10.94 16 12 C -0.13 -6.42 8.51 71.98 0.61 -5.80 16 13 C -0.55 -31.46 8.23 25.60 0.21 -31.25 16 14 H 0.05 2.73 7.52 -2.91 -0.02 2.71 16 15 C 0.03 1.97 5.26 84.65 0.45 2.41 16 16 N -0.89 -52.66 10.92 21.45 0.23 -52.42 16 17 Si 0.94 44.82 29.54 68.60 2.03 46.85 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 O -0.37 -18.91 8.66 -148.98 -1.29 -20.21 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.04 1.26 6.32 -2.38 -0.02 1.25 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.51 7.95 -2.39 -0.02 1.49 16 26 H 0.06 1.38 6.43 -2.39 -0.02 1.36 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.27 7.55 -2.39 -0.02 1.25 16 30 H 0.07 1.83 6.43 -2.39 -0.02 1.82 16 31 H 0.05 1.64 6.28 -2.39 -0.02 1.62 16 32 H 0.08 2.57 6.10 -2.38 -0.01 2.55 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.64 7.82 -2.38 -0.02 2.62 16 35 H 0.05 2.29 7.66 -2.39 -0.02 2.27 16 36 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 3.25 6.01 -2.39 -0.01 3.24 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -63.23 294.82 5.55 -57.68 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.99 Total: 14.78 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 3.58 Total: -46.68 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.23 Total: -52.42 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.29 Total: -20.21 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.23 5.55 -57.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.305 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds