Wall clock time and date at job start Mon Mar 30 2020 02:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 C 1.52995 * 109.46918 * 120.00143 * 2 1 3 5 5 H 1.08998 * 109.47521 * 54.54361 * 4 2 1 6 6 C 1.53002 * 109.47174 * 294.53693 * 4 2 1 7 7 C 1.53002 * 109.47073 * 174.54058 * 4 2 1 8 8 H 1.09003 * 110.27538 * 66.03945 * 7 4 2 9 9 C 1.54947 * 110.31081 * 188.23088 * 7 4 2 10 10 C 1.55306 * 100.94268 * 155.35778 * 9 7 4 11 11 C 1.54377 * 102.25434 * 325.87185 * 10 9 7 12 12 C 1.52993 * 109.90893 * 140.91018 * 11 10 9 13 13 C 1.50701 * 109.83035 * 261.84336 * 11 10 9 14 14 H 1.07997 * 119.99943 * 359.58368 * 13 11 10 15 15 C 1.37877 * 120.00036 * 179.58876 * 13 11 10 16 16 N 1.31514 * 120.00219 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99951 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47081 * 89.99946 * 17 15 13 19 19 H 1.48492 * 109.46964 * 209.99868 * 17 15 13 20 20 H 1.48504 * 109.46792 * 329.99733 * 17 15 13 21 21 O 1.43239 * 107.59205 * 21.35302 * 11 10 9 22 22 H 1.09001 * 109.46746 * 65.37152 * 1 2 3 23 23 H 1.08991 * 109.46914 * 185.37520 * 1 2 3 24 24 H 1.08997 * 109.47107 * 305.37984 * 1 2 3 25 25 H 1.09004 * 109.46894 * 239.99776 * 2 1 3 26 26 H 1.09000 * 109.47434 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47211 * 299.99910 * 3 2 1 28 28 H 1.08999 * 109.46799 * 59.99807 * 3 2 1 29 29 H 1.08999 * 109.46472 * 60.00266 * 6 4 2 30 30 H 1.08996 * 109.47201 * 179.97438 * 6 4 2 31 31 H 1.08999 * 109.47009 * 300.00405 * 6 4 2 32 32 H 1.08997 * 111.13217 * 273.27943 * 9 7 4 33 33 H 1.09003 * 111.12153 * 37.44152 * 9 7 4 34 34 H 1.08994 * 110.85289 * 207.67663 * 10 9 7 35 35 H 1.08997 * 110.84386 * 84.06046 * 10 9 7 36 36 H 1.09004 * 109.47614 * 300.36739 * 12 11 10 37 37 H 1.08999 * 109.47342 * 60.36605 * 12 11 10 38 38 H 1.09000 * 109.47532 * 180.36740 * 12 11 10 39 39 H 0.96997 * 120.00385 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5991 -1.7168 1.2994 6 6 1.6452 0.0749 2.4947 7 6 3.5638 -0.8412 1.1825 8 1 4.0233 0.1456 1.2395 9 6 4.0828 -1.7453 2.3289 10 6 5.4251 -2.2433 1.7269 11 6 5.0914 -2.3468 0.2232 12 6 6.2844 -1.8727 -0.6091 13 6 4.7570 -3.7734 -0.1293 14 1 4.7838 -4.5383 0.6326 15 6 4.4170 -4.1020 -1.4244 16 7 4.3840 -3.1704 -2.3522 17 14 4.0032 -5.8704 -1.8614 18 1 2.5460 -6.0959 -1.6851 19 1 4.3770 -6.1315 -3.2746 20 1 4.7576 -6.7896 -0.9719 21 8 3.9591 -1.5062 -0.0279 22 1 -0.3633 0.4283 -0.9342 23 1 -0.3633 -1.0231 0.0963 24 1 -0.3633 0.5950 0.8379 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.5596 0.1603 2.5422 30 1 2.0080 -0.4392 3.3847 31 1 2.0861 1.0704 2.4444 32 1 4.2502 -1.1690 3.2387 33 1 3.4021 -2.5766 2.5123 34 1 5.6941 -3.2185 2.1326 35 1 6.2201 -1.5178 1.8987 36 1 6.5150 -0.8376 -0.3570 37 1 7.1495 -2.5002 -0.3944 38 1 6.0390 -1.9426 -1.6688 39 1 4.1444 -3.4015 -3.2632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307037151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:17 Heat of formation + Delta-G solvation = -71.787858 kcal Electronic energy + Delta-G solvation = -17185.111820 eV Core-core repulsion = 14705.855570 eV Total energy + Delta-G solvation = -2479.256251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.80821 -36.35178 -32.76042 -31.05405 -30.49165 -28.50344 -26.82392 -25.25201 -24.81657 -22.79870 -20.31575 -19.41026 -18.10690 -16.67921 -15.39038 -14.96356 -14.43815 -14.01201 -13.73727 -13.16853 -12.69460 -12.65458 -12.29642 -11.95569 -11.81695 -11.62374 -11.36756 -11.20763 -11.13506 -10.83312 -10.77428 -10.52007 -10.40142 -10.26713 -10.19780 -9.88421 -9.78674 -9.50692 -9.21186 -9.00805 -8.41059 -7.71128 -5.87322 -4.02749 3.33719 3.40517 3.42876 4.47786 4.98407 5.26690 5.38870 5.41234 5.60747 5.69122 5.75936 5.84259 5.87889 5.93486 6.02349 6.08295 6.23358 6.27300 6.31753 6.35537 6.42570 6.43255 6.56861 6.62145 6.74642 6.84771 6.85963 6.90346 6.99213 7.07599 7.13270 7.23097 7.47850 7.85238 8.17756 8.46713 8.75008 9.16577 9.67749 11.14432 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025869 B = 0.009947 C = 0.008732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.126210 B = 2814.382432 C = 3205.839500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.080 4.080 5 H 0.070 0.930 6 C -0.147 4.147 7 C 0.083 3.917 8 H 0.043 0.957 9 C -0.144 4.144 10 C -0.144 4.144 11 C 0.228 3.772 12 C -0.140 4.140 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.082 3.918 16 N -0.860 5.860 17 Si 0.884 3.116 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 O -0.346 6.346 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.009 0.991 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 6.250 6.476 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.098 4.098 5 H 0.089 0.911 6 C -0.204 4.204 7 C 0.024 3.976 8 H 0.061 0.939 9 C -0.182 4.182 10 C -0.181 4.181 11 C 0.191 3.809 12 C -0.198 4.198 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.123 4.123 16 N -0.497 5.497 17 Si 0.712 3.288 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 O -0.265 6.265 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.020 6.307 6.072 9.633 hybrid contribution -0.144 -1.042 -0.026 1.052 sum -4.163 5.265 6.045 9.034 Atomic orbital electron populations 1.21868 0.96535 1.01158 1.00577 1.21020 0.94144 0.95834 0.99736 1.21878 1.01484 0.96424 1.00304 1.21226 0.95563 0.99082 0.93961 0.91125 1.21897 1.00658 1.00178 0.97670 1.22681 0.93038 0.94742 0.87134 0.93891 1.23168 0.98093 0.99373 0.97554 1.23202 0.95725 1.00013 0.99197 1.19605 0.83791 0.89738 0.87762 1.22000 0.96974 0.95612 1.05207 1.21227 1.48749 0.92270 0.94391 0.92616 1.24967 0.94309 0.96501 0.96533 1.69956 1.46169 1.31849 1.01705 0.86753 0.78766 0.85743 0.77584 1.20687 1.21256 1.20000 1.88736 1.49626 1.60541 1.27608 0.93452 0.93044 0.93381 0.89325 0.92416 0.93668 0.93354 0.92940 0.93166 0.92717 0.92674 0.91231 0.91610 0.93328 0.97145 0.94727 0.89212 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.82 37.16 0.33 -1.78 16 2 C -0.09 -1.54 2.60 -90.62 -0.24 -1.77 16 3 C -0.14 -2.21 8.46 37.16 0.31 -1.90 16 4 C -0.08 -1.41 1.93 -90.62 -0.18 -1.58 16 5 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 6 C -0.15 -2.07 8.32 37.16 0.31 -1.76 16 7 C 0.08 1.67 2.55 -25.70 -0.07 1.61 16 8 H 0.04 0.85 6.93 -51.93 -0.36 0.49 16 9 C -0.14 -2.76 5.80 -24.48 -0.14 -2.90 16 10 C -0.14 -3.06 6.08 -24.79 -0.15 -3.21 16 11 C 0.23 5.77 0.82 -91.05 -0.07 5.70 16 12 C -0.14 -3.49 8.52 37.15 0.32 -3.17 16 13 C -0.53 -14.64 8.23 -34.44 -0.28 -14.92 16 14 H 0.06 1.53 7.48 -52.49 -0.39 1.14 16 15 C 0.08 2.28 5.26 -17.82 -0.09 2.19 16 16 N -0.86 -24.81 10.92 55.43 0.61 -24.21 16 17 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 O -0.35 -8.76 8.97 -35.23 -0.32 -9.07 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.62 6.85 -51.93 -0.36 0.26 16 25 H 0.09 1.89 7.45 -51.93 -0.39 1.50 16 26 H 0.06 0.96 6.73 -51.93 -0.35 0.61 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 6.34 -51.93 -0.33 0.32 16 29 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 30 H 0.05 0.67 7.50 -51.93 -0.39 0.28 16 31 H 0.05 0.73 6.34 -51.93 -0.33 0.40 16 32 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.07 1.36 7.99 -51.93 -0.42 0.95 16 34 H 0.07 1.38 7.60 -51.93 -0.39 0.99 16 35 H 0.05 0.95 7.85 -51.93 -0.41 0.55 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -28.78 295.11 -7.09 -35.87 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.86 Total: 0.06 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 0.05 Total: -23.51 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.61 Total: -24.21 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.32 Total: -9.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.78 -7.09 -35.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307037151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.917 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds