Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47324 * 2 1 4 4 C 1.52998 * 109.47586 * 239.99851 * 2 1 3 5 5 H 1.08994 * 109.47685 * 174.44399 * 4 2 1 6 6 C 1.53010 * 109.46853 * 54.44904 * 4 2 1 7 7 C 1.52996 * 109.47486 * 294.45248 * 4 2 1 8 8 H 1.09004 * 109.48045 * 65.27160 * 7 4 2 9 9 C 1.53086 * 109.48337 * 185.30847 * 7 4 2 10 10 C 1.53188 * 109.16245 * 177.59030 * 9 7 4 11 11 C 1.53176 * 109.03510 * 303.01713 * 10 9 7 12 12 C 1.53099 * 109.16223 * 56.98439 * 11 10 9 13 13 H 1.08995 * 109.49118 * 182.40101 * 12 11 10 14 14 C 1.50696 * 109.48166 * 62.37106 * 12 11 10 15 15 H 1.08004 * 120.00240 * 0.05522 * 14 12 11 16 16 C 1.37877 * 120.00042 * 180.02562 * 14 12 11 17 17 N 1.31509 * 119.99838 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99841 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46910 * 60.00307 * 18 16 14 20 20 H 1.48505 * 109.46765 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46888 * 299.99661 * 18 16 14 22 22 O 1.42904 * 109.41148 * 302.38756 * 12 11 10 23 23 H 1.09007 * 109.46953 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47603 * 299.99995 * 1 2 3 25 25 H 1.09002 * 109.47198 * 60.00098 * 1 2 3 26 26 H 1.09002 * 109.47198 * 119.99902 * 2 1 3 27 27 H 1.08999 * 109.47089 * 305.18205 * 3 2 1 28 28 H 1.09007 * 109.47196 * 65.17446 * 3 2 1 29 29 H 1.08998 * 109.47900 * 185.17995 * 3 2 1 30 30 H 1.09001 * 109.46929 * 59.99903 * 6 4 2 31 31 H 1.09004 * 109.47075 * 180.02562 * 6 4 2 32 32 H 1.09003 * 109.47029 * 300.00504 * 6 4 2 33 33 H 1.08997 * 109.52411 * 297.49256 * 9 7 4 34 34 H 1.08996 * 109.52079 * 57.68739 * 9 7 4 35 35 H 1.09002 * 109.54167 * 183.15209 * 10 9 7 36 36 H 1.09000 * 109.61730 * 62.93079 * 10 9 7 37 37 H 1.08999 * 109.52404 * 297.07893 * 11 10 9 38 38 H 1.08999 * 109.57252 * 176.91510 * 11 10 9 39 39 H 0.97006 * 120.00194 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1254 -0.6359 -1.3003 6 6 1.4193 -0.0850 -2.4946 7 6 1.6472 -2.1984 -1.1815 8 1 0.5617 -2.2882 -1.2249 9 6 2.2693 -2.9469 -2.3631 10 6 1.9215 -4.4348 -2.2551 11 6 2.4144 -4.9664 -0.9058 12 6 1.7866 -4.1399 0.2196 13 1 2.1667 -4.4861 1.1807 14 6 0.2885 -4.2995 0.1848 15 1 -0.1704 -4.9280 -0.5641 16 6 -0.4964 -3.6435 1.1093 17 7 0.0624 -2.8783 2.0213 18 14 -2.3535 -3.8408 1.0656 19 1 -2.7036 -5.2721 1.2489 20 1 -2.9623 -3.0381 2.1566 21 1 -2.8707 -3.3683 -0.2437 22 8 2.1234 -2.7625 0.0421 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6028 1.9824 -0.8399 28 1 1.7543 1.9289 0.9328 29 1 3.1260 1.4440 -0.0928 30 1 1.6991 0.9673 -2.5429 31 1 1.7823 -0.5992 -3.3846 32 1 0.3338 -0.1703 -2.4435 33 1 1.8735 -2.5471 -3.2967 34 1 3.3521 -2.8235 -2.3430 35 1 2.4079 -4.9824 -3.0625 36 1 0.8416 -4.5642 -2.3256 37 1 3.5001 -4.8838 -0.8563 38 1 2.1232 -6.0111 -0.7965 39 1 -0.4898 -2.4171 2.6720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307603147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -80.117045 kcal Electronic energy + Delta-G solvation = -17557.870575 eV Core-core repulsion = 15078.253144 eV Total energy + Delta-G solvation = -2479.617431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.66957 -36.10737 -32.63140 -32.11252 -30.77375 -28.29161 -26.52254 -25.41548 -24.27829 -22.43377 -21.03371 -18.92134 -18.03503 -16.32084 -15.16878 -14.74768 -14.61166 -14.06976 -13.63948 -13.44256 -13.00416 -12.64656 -12.40036 -12.08899 -11.80360 -11.60541 -11.38669 -11.19951 -11.04342 -10.90407 -10.64673 -10.58650 -10.38960 -10.09988 -10.02040 -9.81826 -9.61499 -9.46688 -9.18812 -8.54004 -8.36630 -7.63175 -5.92631 -4.06510 3.30608 3.36439 3.39051 4.43826 5.12204 5.39251 5.43283 5.57464 5.76203 5.85666 5.90492 5.94516 5.97917 6.01494 6.19255 6.26327 6.33426 6.39085 6.43716 6.47405 6.52914 6.56051 6.60333 6.66757 6.77560 6.85962 6.95234 7.02411 7.11635 7.17321 7.24619 7.38205 7.45320 7.78028 7.94031 8.29807 8.90238 9.20314 9.64426 11.10724 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.014090 C = 0.010142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.327470 B = 1986.771551 C = 2760.046339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.076 4.076 5 H 0.059 0.941 6 C -0.148 4.148 7 C 0.111 3.889 8 H 0.064 0.936 9 C -0.145 4.145 10 C -0.108 4.108 11 C -0.142 4.142 12 C 0.214 3.786 13 H 0.057 0.943 14 C -0.556 4.556 15 H 0.053 0.947 16 C 0.085 3.915 17 N -0.851 5.851 18 Si 0.873 3.127 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.367 6.367 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 4.544 -6.284 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.094 4.094 5 H 0.077 0.923 6 C -0.205 4.205 7 C 0.053 3.947 8 H 0.081 0.919 9 C -0.183 4.183 10 C -0.146 4.146 11 C -0.180 4.180 12 C 0.158 3.842 13 H 0.075 0.925 14 C -0.594 4.594 15 H 0.071 0.929 16 C -0.121 4.121 17 N -0.487 5.487 18 Si 0.701 3.299 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 O -0.286 6.286 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.617 4.775 -5.978 8.087 hybrid contribution -1.264 -0.323 -0.226 1.324 sum 1.353 4.452 -6.204 7.756 Atomic orbital electron populations 1.21848 0.95831 1.03070 0.99111 1.20912 0.95723 0.93864 0.99329 1.21917 1.00145 0.97685 1.00522 1.21110 0.99188 0.94734 0.94414 0.92262 1.21933 1.01307 0.99734 0.97513 1.21547 0.98360 0.89861 0.84953 0.91859 1.22216 1.00130 0.96614 0.99290 1.21430 1.01374 0.95159 0.96609 1.22181 0.98407 1.00038 0.97353 1.19641 0.93547 0.78682 0.92354 0.92511 1.21465 0.92084 1.30349 1.15518 0.92893 1.24930 0.97492 0.94698 0.95009 1.70036 1.34683 1.28058 1.15932 0.86988 0.87015 0.78212 0.77730 1.20343 1.21220 1.20251 1.87873 1.77025 1.27235 1.36497 0.90657 0.94251 0.94407 0.89099 0.93560 0.93567 0.93542 0.93107 0.93246 0.92413 0.92936 0.93100 0.94497 0.91522 0.94281 0.92877 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.45 37.15 0.31 -2.43 16 2 C -0.08 -1.51 2.58 -90.63 -0.23 -1.74 16 3 C -0.15 -2.26 8.83 37.16 0.33 -1.93 16 4 C -0.08 -1.39 1.93 -90.62 -0.18 -1.57 16 5 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 6 C -0.15 -2.29 8.22 37.16 0.31 -1.98 16 7 C 0.11 2.37 1.59 -26.69 -0.04 2.33 16 8 H 0.06 1.52 5.79 -51.93 -0.30 1.22 16 9 C -0.14 -2.74 5.12 -26.59 -0.14 -2.88 16 10 C -0.11 -2.12 5.78 -26.54 -0.15 -2.27 16 11 C -0.14 -3.02 5.59 -26.59 -0.15 -3.17 16 12 C 0.21 5.36 3.16 -27.83 -0.09 5.27 16 13 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 14 C -0.56 -14.73 6.59 -34.44 -0.23 -14.96 16 15 H 0.05 1.40 6.87 -52.48 -0.36 1.04 16 16 C 0.08 2.26 5.16 -17.82 -0.09 2.17 16 17 N -0.85 -23.51 12.84 55.43 0.71 -22.80 16 18 Si 0.87 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 O -0.37 -9.09 8.65 -35.23 -0.30 -9.39 16 23 H 0.07 1.72 6.46 -51.93 -0.34 1.38 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.64 6.34 -51.93 -0.33 0.31 16 26 H 0.09 2.05 7.37 -51.93 -0.38 1.67 16 27 H 0.05 0.65 6.84 -51.93 -0.36 0.30 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 31 H 0.05 0.71 6.63 -51.93 -0.34 0.37 16 32 H 0.06 0.92 6.34 -51.93 -0.33 0.59 16 33 H 0.05 0.89 6.70 -51.93 -0.35 0.54 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.39 6.85 -51.93 -0.36 1.03 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -26.90 289.81 -7.32 -34.22 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.73 Total: 1.00 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.35 Total: -23.16 kcal Atomic # 7 Polarization: -23.51 SS G_CDS: 0.71 Total: -22.80 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.30 Total: -9.39 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.90 -7.32 -34.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307603147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.896 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds