Wall clock time and date at job start Mon Mar 30 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46869 * 2 1 4 4 C 1.52994 * 109.47203 * 119.99978 * 2 1 3 5 5 H 1.09000 * 109.47737 * 300.00011 * 4 2 1 6 6 C 1.53002 * 109.46886 * 180.02562 * 4 2 1 7 7 C 1.53004 * 109.47190 * 60.00219 * 4 2 1 8 8 H 1.08995 * 109.47807 * 305.02158 * 7 4 2 9 9 C 1.53089 * 109.48058 * 184.99491 * 7 4 2 10 10 C 1.53176 * 109.16238 * 182.40740 * 9 7 4 11 11 C 1.53178 * 109.03581 * 56.98336 * 10 9 7 12 12 C 1.53095 * 109.16128 * 303.01796 * 11 10 9 13 13 H 1.08996 * 109.48185 * 297.61630 * 12 11 10 14 14 C 1.50706 * 109.47644 * 177.59134 * 12 11 10 15 15 H 1.07999 * 120.00196 * 0.02562 * 14 12 11 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 12 11 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47361 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47264 * 120.00115 * 18 16 14 21 21 H 1.48500 * 109.46969 * 239.99720 * 18 16 14 22 22 O 1.42896 * 109.41387 * 57.61099 * 12 11 10 23 23 H 1.09000 * 109.46783 * 299.99426 * 1 2 3 24 24 H 1.09001 * 109.47226 * 59.99841 * 1 2 3 25 25 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46783 * 240.00574 * 2 1 3 27 27 H 1.08998 * 109.47006 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47326 * 300.00098 * 3 2 1 29 29 H 1.09000 * 109.47233 * 60.00206 * 3 2 1 30 30 H 1.08998 * 109.47509 * 60.00382 * 6 4 2 31 31 H 1.08998 * 109.47201 * 180.02562 * 6 4 2 32 32 H 1.09000 * 109.47082 * 299.99942 * 6 4 2 33 33 H 1.09006 * 109.52050 * 62.50753 * 9 7 4 34 34 H 1.08999 * 109.52820 * 302.31390 * 9 7 4 35 35 H 1.08998 * 109.54617 * 297.11646 * 10 9 7 36 36 H 1.08998 * 109.54474 * 176.85289 * 10 9 7 37 37 H 1.08999 * 109.52075 * 183.11578 * 11 10 9 38 38 H 1.08997 * 109.57564 * 62.95823 * 11 10 9 39 39 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7206 1.2494 7 6 1.5301 -2.1638 1.2492 8 1 0.4439 -2.1653 1.1592 9 6 1.9351 -2.8484 2.5572 10 6 1.4737 -4.3087 2.5241 11 6 2.0790 -4.9963 1.2965 12 6 1.6684 -4.2286 0.0371 13 1 0.5840 -4.2574 -0.0688 14 6 2.3085 -4.8644 -1.1700 15 1 2.9441 -5.7295 -1.0515 16 6 2.0827 -4.3416 -2.4257 17 7 1.3083 -3.2884 -2.5700 18 14 2.8755 -5.1301 -3.9220 19 1 3.6940 -6.2928 -3.4937 20 1 1.8183 -5.5868 -4.8595 21 1 3.7451 -4.1371 -4.6025 22 8 2.1008 -2.8710 0.1463 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.9331 0.3072 1.2497 31 1 3.9335 -1.2348 2.1391 32 1 3.9338 -1.2342 0.3594 33 1 1.4648 -2.3368 3.3969 34 1 3.0189 -2.8113 2.6674 35 1 0.3861 -4.3462 2.4638 36 1 1.8077 -4.8172 3.4286 37 1 1.7116 -6.0206 1.2346 38 1 3.1657 -5.0035 1.3806 39 1 1.1491 -2.9209 -3.4534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307603150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:36 Heat of formation + Delta-G solvation = -82.259136 kcal Electronic energy + Delta-G solvation = -17191.431389 eV Core-core repulsion = 14711.721070 eV Total energy + Delta-G solvation = -2479.710320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.70236 -35.98392 -32.83465 -32.18851 -30.91587 -28.73070 -26.85576 -25.38377 -23.87081 -22.25219 -20.93242 -19.21327 -18.62625 -16.56161 -14.88327 -14.76192 -14.36044 -14.29210 -14.03595 -13.68416 -13.11378 -12.61983 -12.36859 -12.24947 -11.89365 -11.76147 -11.42112 -11.24846 -10.94318 -10.82853 -10.70123 -10.56411 -10.42021 -10.27977 -10.09984 -9.94783 -9.85165 -9.53028 -9.15143 -8.75814 -8.41359 -7.72339 -5.95922 -4.07155 3.32048 3.40279 3.43919 4.45626 5.04431 5.25265 5.41588 5.50983 5.60570 5.71903 5.75441 5.82526 5.86649 6.04201 6.08443 6.16104 6.19958 6.29759 6.32619 6.35847 6.39490 6.44393 6.51451 6.56747 6.65716 6.80366 6.89413 6.90719 6.93796 6.96765 7.01786 7.13753 7.29709 7.59307 7.95057 8.36403 8.86192 9.24572 9.62634 11.11222 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.011037 C = 0.008446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.740478 B = 2536.300055 C = 3314.301964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.070 4.070 5 H 0.059 0.941 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.042 0.958 9 C -0.148 4.148 10 C -0.120 4.120 11 C -0.143 4.143 12 C 0.220 3.780 13 H 0.010 0.990 14 C -0.525 4.525 15 H 0.062 0.938 16 C 0.080 3.920 17 N -0.856 5.856 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 O -0.345 6.345 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 5.405 7.284 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.088 4.088 5 H 0.077 0.923 6 C -0.198 4.198 7 C 0.028 3.972 8 H 0.059 0.941 9 C -0.186 4.186 10 C -0.158 4.158 11 C -0.181 4.181 12 C 0.164 3.836 13 H 0.028 0.972 14 C -0.562 4.562 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.715 3.285 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 O -0.264 6.264 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.059 5.612 7.027 8.993 hybrid contribution 0.185 -0.498 -0.560 0.771 sum 0.244 5.114 6.467 8.249 Atomic orbital electron populations 1.21800 0.96056 1.02080 0.99826 1.21052 0.95215 0.94611 0.99834 1.21904 1.00841 0.97022 1.00482 1.21082 0.96060 0.94579 0.97116 0.92273 1.21792 0.95460 1.00058 1.02497 1.21866 0.96304 0.91310 0.87705 0.94066 1.22256 1.01400 0.96248 0.98672 1.21606 0.99953 0.95821 0.98385 1.22252 1.00239 0.99293 0.96352 1.19635 0.94409 0.78868 0.90643 0.97231 1.21027 1.32100 1.12913 0.90200 0.92027 1.25027 0.94363 0.94404 0.98823 1.70045 1.35347 1.21271 1.22598 0.86633 0.79356 0.79439 0.83080 1.19744 1.21044 1.20932 1.88319 1.68122 1.25567 1.44358 0.94270 0.93558 0.91805 0.88940 0.92823 0.93455 0.93743 0.93866 0.93557 0.91164 0.93110 0.91717 0.92935 0.93483 0.92800 0.92664 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.85 37.16 0.33 -2.08 16 2 C -0.09 -1.59 2.40 -90.62 -0.22 -1.81 16 3 C -0.15 -2.15 8.84 37.16 0.33 -1.82 16 4 C -0.07 -1.23 1.81 -90.62 -0.16 -1.39 16 5 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.14 -2.41 8.40 37.16 0.31 -2.09 16 7 C 0.09 1.76 2.11 -26.68 -0.06 1.71 16 8 H 0.04 0.87 6.17 -51.93 -0.32 0.55 16 9 C -0.15 -2.64 5.22 -26.59 -0.14 -2.78 16 10 C -0.12 -2.19 6.03 -26.55 -0.16 -2.35 16 11 C -0.14 -3.10 5.36 -26.59 -0.14 -3.24 16 12 C 0.22 5.67 2.50 -27.83 -0.07 5.60 16 13 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 14 C -0.53 -14.74 8.79 -34.44 -0.30 -15.04 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -24.73 12.84 55.43 0.71 -24.02 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 O -0.34 -8.57 8.10 -35.23 -0.29 -8.86 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.24 6.32 -51.93 -0.33 0.91 16 26 H 0.09 2.04 7.83 -51.93 -0.41 1.63 16 27 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.05 0.74 6.52 -51.93 -0.34 0.40 16 32 H 0.07 1.40 7.56 -51.93 -0.39 1.01 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.16 6.47 -51.93 -0.34 0.82 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -28.51 296.84 -7.48 -35.99 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.98 Total: -0.79 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -0.38 Total: -23.17 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.71 Total: -24.02 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.29 Total: -8.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.51 -7.48 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307603150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.266 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds