Wall clock time and date at job start Mon Mar 30 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.27459 * 2 1 4 4 N 1.46903 * 109.47080 * 59.30015 * 3 2 1 5 5 C 1.54595 * 110.30942 * 122.09017 * 2 1 3 6 6 C 1.54937 * 102.92043 * 96.95738 * 5 2 1 7 7 N 1.48535 * 103.22752 * 37.41238 * 6 5 2 8 8 C 1.46904 * 111.00269 * 200.27659 * 7 6 5 9 9 C 1.53004 * 109.47129 * 290.13024 * 8 7 6 10 10 C 1.52998 * 109.46815 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47126 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99506 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00171 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00041 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47609 * 89.99510 * 15 13 11 17 17 H 1.48503 * 109.46997 * 209.99597 * 15 13 11 18 18 H 1.48498 * 109.47029 * 329.99130 * 15 13 11 19 19 C 1.47902 * 105.82010 * 320.79435 * 7 6 5 20 20 H 1.09001 * 109.47002 * 299.36096 * 1 2 3 21 21 H 1.08993 * 109.46955 * 59.36533 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.36362 * 1 2 3 23 23 H 1.08994 * 109.47130 * 179.30389 * 3 2 1 24 24 H 1.09001 * 109.47018 * 299.30113 * 3 2 1 25 25 H 1.00898 * 110.99626 * 179.97438 * 4 3 2 26 26 H 1.00901 * 110.99992 * 303.95748 * 4 3 2 27 27 H 1.08994 * 110.72520 * 215.31374 * 5 2 1 28 28 H 1.08992 * 110.72366 * 338.42444 * 5 2 1 29 29 H 1.09002 * 110.66864 * 155.84667 * 6 5 2 30 30 H 1.09001 * 110.67014 * 278.81023 * 6 5 2 31 31 H 1.09005 * 109.46749 * 50.12613 * 8 7 6 32 32 H 1.08989 * 109.47266 * 170.12351 * 8 7 6 33 33 H 1.08996 * 109.46777 * 299.99504 * 9 8 7 34 34 H 1.08998 * 109.47027 * 59.99509 * 9 8 7 35 35 H 1.08994 * 109.47814 * 300.00331 * 10 9 8 36 36 H 1.09005 * 109.46903 * 60.00079 * 10 9 8 37 37 H 0.97001 * 119.99885 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.91340 * 265.97476 * 19 7 6 39 39 H 1.09001 * 109.91505 * 144.68639 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 7 1.5666 2.1395 1.1909 5 6 2.0666 -0.7702 1.2283 6 6 2.3584 -2.1791 0.6534 7 7 2.8809 -1.8897 -0.7066 8 6 2.7668 -3.0682 -1.5762 9 6 3.7583 -4.1390 -1.1166 10 6 3.6390 -5.3666 -2.0220 11 6 4.6160 -6.4212 -1.5698 12 1 5.2575 -6.2345 -0.7211 13 6 4.6909 -7.6241 -2.2393 14 7 3.9094 -7.8515 -3.2723 15 14 5.9015 -8.9315 -1.6783 16 1 5.2493 -9.8131 -0.6769 17 1 6.3311 -9.7420 -2.8461 18 1 7.0864 -8.2788 -1.0660 19 6 2.0645 -0.7694 -1.2222 20 1 -0.3633 0.5039 0.8957 21 1 -0.3633 0.5236 -0.8842 22 1 -0.3633 -1.0276 -0.0114 23 1 3.1500 1.4199 0.0125 24 1 1.7143 1.9503 -0.8962 25 1 1.9036 3.0903 1.2142 26 1 0.5590 2.1114 1.2360 27 1 2.9807 -0.3098 1.6032 28 1 1.3115 -0.8196 2.0127 29 1 3.1106 -2.6913 1.2535 30 1 1.4438 -2.7696 0.5994 31 1 1.7527 -3.4641 -1.5204 32 1 2.9898 -2.7839 -2.6045 33 1 4.7723 -3.7432 -1.1724 34 1 3.5353 -4.4233 -0.0883 35 1 2.6250 -5.7623 -1.9660 36 1 3.8618 -5.0825 -3.0505 37 1 3.9618 -8.6980 -3.7431 38 1 1.2323 -1.1564 -1.8103 39 1 2.6812 -0.1116 -1.8346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308457816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:05 Heat of formation + Delta-G solvation = -19.557258 kcal Electronic energy + Delta-G solvation = -15868.121203 eV Core-core repulsion = 13423.422592 eV Total energy + Delta-G solvation = -2444.698611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57454 -35.83418 -33.73657 -32.19023 -30.51679 -29.39899 -27.13002 -25.87849 -23.81448 -22.79676 -20.97843 -19.89470 -18.83971 -16.46065 -16.21971 -15.46026 -14.98414 -14.58170 -14.43327 -14.34427 -13.97955 -13.24413 -13.00135 -12.58900 -12.44238 -12.20437 -11.74158 -11.61209 -11.34665 -11.07515 -10.83585 -10.71529 -10.63414 -10.53478 -10.46555 -10.34848 -9.57413 -9.26914 -9.00380 -8.87968 -8.30020 -8.07341 -5.95361 -3.97101 3.35357 3.41202 3.45461 4.26082 4.31551 4.51283 4.62686 4.70602 4.81571 5.26686 5.27596 5.40409 5.41644 5.45760 5.54923 5.62598 5.76812 5.80288 5.84013 5.93493 5.99197 6.07289 6.24306 6.26083 6.36980 6.39788 6.75315 6.85373 6.90363 7.14635 7.19273 7.30664 7.47011 7.73872 7.89241 8.05594 8.49390 9.10188 9.66646 11.16196 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.067397 B = 0.004332 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.348647 B = 6461.254699 C = 6605.360407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C 0.078 3.922 4 N -0.849 5.849 5 C -0.097 4.097 6 C 0.033 3.967 7 N -0.516 5.516 8 C 0.048 3.952 9 C -0.102 4.102 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.043 3.957 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.023 0.977 25 H 0.339 0.661 26 H 0.338 0.662 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.043 0.957 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 18.199 6.575 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.053 4.053 4 N -0.379 5.379 5 C -0.135 4.135 6 C -0.095 4.095 7 N -0.239 5.239 8 C -0.080 4.080 9 C -0.140 4.140 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.086 4.086 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.042 0.958 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.051 17.649 6.846 19.874 hybrid contribution -0.760 -0.459 -0.639 1.094 sum -6.811 17.190 6.207 19.505 Atomic orbital electron populations 1.21919 0.94583 1.02096 1.01286 1.21428 0.95088 0.94709 0.96077 1.21837 1.00252 0.92936 0.90277 1.58716 1.15538 1.20796 1.42882 1.22431 1.01137 0.94126 0.95852 1.23267 0.98572 0.96627 0.91049 1.64825 1.50135 1.06528 1.02457 1.22458 0.98749 0.90303 0.96472 1.21591 0.97534 0.95048 0.99857 1.19082 0.96925 0.91071 0.94567 1.21266 1.20470 0.99621 1.14164 0.92670 1.25031 0.96011 0.98471 0.95046 1.69970 1.39017 1.24389 1.20342 0.86596 0.81573 0.81722 0.78136 1.20718 1.21265 1.19832 1.22927 0.95853 0.93852 0.95920 0.92243 0.92969 0.92389 0.90493 0.95834 0.84935 0.84900 0.90574 0.91454 0.90002 0.94101 0.95282 0.91420 0.92647 0.93570 0.96899 0.96654 0.93087 0.93826 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.84 37.16 0.29 -1.04 16 2 C -0.07 -0.78 0.76 -153.15 -0.12 -0.90 16 3 C 0.08 0.74 5.43 -3.82 -0.02 0.72 16 4 N -0.85 -6.91 9.30 -10.37 -0.10 -7.01 16 5 C -0.10 -1.17 5.88 -24.87 -0.15 -1.32 16 6 C 0.03 0.48 5.80 -1.90 -0.01 0.47 16 7 N -0.52 -8.22 5.26 -230.45 -1.21 -9.43 16 8 C 0.05 0.88 4.69 -3.82 -0.02 0.86 16 9 C -0.10 -2.23 5.21 -26.73 -0.14 -2.37 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 15 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.04 0.57 6.01 -2.76 -0.02 0.55 16 20 H 0.06 0.49 6.67 -51.93 -0.35 0.14 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 24 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.34 2.19 9.08 -39.29 -0.36 1.84 16 26 H 0.34 2.41 7.10 -39.29 -0.28 2.13 16 27 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 28 H 0.07 0.75 7.85 -51.93 -0.41 0.35 16 29 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 30 H 0.04 0.61 7.86 -51.93 -0.41 0.20 16 31 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.07 1.24 8.11 -51.94 -0.42 0.82 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.99 7.25 -51.93 -0.38 0.62 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.04 0.58 7.31 -51.93 -0.38 0.20 16 39 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -30.73 305.34 -8.81 -39.55 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.10 Total: -1.50 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.73 Total: -16.49 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.57 Total: -43.26 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.73 -8.81 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308457816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.990 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds