Wall clock time and date at job start Mon Mar 30 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.27459 * 2 1 4 4 N 1.46903 * 109.47080 * 59.30015 * 3 2 1 5 5 C 1.54595 * 110.30942 * 122.09017 * 2 1 3 6 6 C 1.54937 * 102.92043 * 96.95738 * 5 2 1 7 7 N 1.48535 * 103.22752 * 37.41238 * 6 5 2 8 8 C 1.46904 * 111.00269 * 200.27659 * 7 6 5 9 9 C 1.53004 * 109.47129 * 290.13024 * 8 7 6 10 10 C 1.52998 * 109.46815 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47126 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99506 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00171 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00041 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47609 * 89.99510 * 15 13 11 17 17 H 1.48503 * 109.46997 * 209.99597 * 15 13 11 18 18 H 1.48498 * 109.47029 * 329.99130 * 15 13 11 19 19 C 1.47902 * 105.82010 * 320.79435 * 7 6 5 20 20 H 1.09001 * 109.47002 * 299.36096 * 1 2 3 21 21 H 1.08993 * 109.46955 * 59.36533 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.36362 * 1 2 3 23 23 H 1.08994 * 109.47130 * 179.30389 * 3 2 1 24 24 H 1.09001 * 109.47018 * 299.30113 * 3 2 1 25 25 H 1.00898 * 110.99626 * 179.97438 * 4 3 2 26 26 H 1.00901 * 110.99992 * 303.95748 * 4 3 2 27 27 H 1.08994 * 110.72520 * 215.31374 * 5 2 1 28 28 H 1.08992 * 110.72366 * 338.42444 * 5 2 1 29 29 H 1.09002 * 110.66864 * 155.84667 * 6 5 2 30 30 H 1.09001 * 110.67014 * 278.81023 * 6 5 2 31 31 H 1.09005 * 109.46749 * 50.12613 * 8 7 6 32 32 H 1.08989 * 109.47266 * 170.12351 * 8 7 6 33 33 H 1.08996 * 109.46777 * 299.99504 * 9 8 7 34 34 H 1.08998 * 109.47027 * 59.99509 * 9 8 7 35 35 H 1.08994 * 109.47814 * 300.00331 * 10 9 8 36 36 H 1.09005 * 109.46903 * 60.00079 * 10 9 8 37 37 H 0.97001 * 119.99885 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.91340 * 265.97476 * 19 7 6 39 39 H 1.09001 * 109.91505 * 144.68639 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 7 1.5666 2.1395 1.1909 5 6 2.0666 -0.7702 1.2283 6 6 2.3584 -2.1791 0.6534 7 7 2.8809 -1.8897 -0.7066 8 6 2.7668 -3.0682 -1.5762 9 6 3.7583 -4.1390 -1.1166 10 6 3.6390 -5.3666 -2.0220 11 6 4.6160 -6.4212 -1.5698 12 1 5.2575 -6.2345 -0.7211 13 6 4.6909 -7.6241 -2.2393 14 7 3.9094 -7.8515 -3.2723 15 14 5.9015 -8.9315 -1.6783 16 1 5.2493 -9.8131 -0.6769 17 1 6.3311 -9.7420 -2.8461 18 1 7.0864 -8.2788 -1.0660 19 6 2.0645 -0.7694 -1.2222 20 1 -0.3633 0.5039 0.8957 21 1 -0.3633 0.5236 -0.8842 22 1 -0.3633 -1.0276 -0.0114 23 1 3.1500 1.4199 0.0125 24 1 1.7143 1.9503 -0.8962 25 1 1.9036 3.0903 1.2142 26 1 0.5590 2.1114 1.2360 27 1 2.9807 -0.3098 1.6032 28 1 1.3115 -0.8196 2.0127 29 1 3.1106 -2.6913 1.2535 30 1 1.4438 -2.7696 0.5994 31 1 1.7527 -3.4641 -1.5204 32 1 2.9898 -2.7839 -2.6045 33 1 4.7723 -3.7432 -1.1724 34 1 3.5353 -4.4233 -0.0883 35 1 2.6250 -5.7623 -1.9660 36 1 3.8618 -5.0825 -3.0505 37 1 3.9618 -8.6980 -3.7431 38 1 1.2323 -1.1564 -1.8103 39 1 2.6812 -0.1116 -1.8346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308457816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:04 Heat of formation + Delta-G solvation = -41.304768 kcal Electronic energy + Delta-G solvation = -15869.064245 eV Core-core repulsion = 13423.422592 eV Total energy + Delta-G solvation = -2445.641654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63415 -37.08111 -35.51183 -33.76668 -31.90059 -30.51176 -28.57244 -27.14620 -25.14681 -24.16287 -22.54714 -21.47858 -19.79321 -18.48958 -17.21919 -16.60136 -16.52994 -16.01920 -15.98352 -15.32130 -14.94213 -14.49056 -14.36498 -14.10315 -13.67910 -13.54744 -13.18429 -13.03000 -12.73429 -12.67254 -12.40495 -12.23929 -12.14201 -11.77025 -11.61027 -11.44521 -11.39468 -11.32252 -11.06842 -10.56114 -9.51722 -9.34825 -8.20920 -6.32176 1.39496 1.41292 1.52788 2.40674 3.07321 3.11990 3.46805 3.70762 3.82172 4.02216 4.17762 4.29394 4.35147 4.40702 4.42619 4.61440 4.70336 4.71468 4.80573 4.85658 4.88452 4.95473 5.06104 5.06800 5.10843 5.21582 5.23680 5.32884 5.45563 5.50881 5.71936 5.84242 6.02621 6.08148 6.26956 6.29479 6.67380 6.84146 7.37040 8.91169 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.067397 B = 0.004332 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.348647 B = 6461.254699 C = 6605.360407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 C 0.084 3.916 4 N -0.853 5.853 5 C -0.088 4.088 6 C 0.028 3.972 7 N -0.525 5.525 8 C 0.060 3.940 9 C -0.087 4.087 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.264 1.264 19 C 0.040 3.960 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.349 0.651 26 H 0.345 0.655 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.046 0.954 35 H -0.010 1.010 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.042 0.958 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 19.170 7.615 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C -0.047 4.047 4 N -0.385 5.385 5 C -0.126 4.126 6 C -0.099 4.099 7 N -0.249 5.249 8 C -0.068 4.068 9 C -0.125 4.125 10 C -0.012 4.012 11 C -0.582 4.582 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.088 4.088 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.163 0.837 26 H 0.160 0.840 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.010 0.990 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.029 18.648 7.899 21.130 hybrid contribution -0.791 -0.737 -0.975 1.456 sum -6.820 17.911 6.924 20.378 Atomic orbital electron populations 1.21890 0.93216 1.01769 1.02634 1.21393 0.96101 0.95147 0.94091 1.21689 0.99522 0.92147 0.91356 1.58663 1.16199 1.21584 1.42067 1.22359 1.01317 0.92370 0.96530 1.23310 0.97955 0.98279 0.90380 1.64757 1.51468 1.06004 1.02705 1.22174 0.97301 0.90524 0.96797 1.21331 0.98306 0.94106 0.98709 1.18976 0.95112 0.92800 0.94297 1.21683 1.21174 1.00738 1.14572 0.92370 1.26003 0.97945 1.00986 0.94942 1.70099 1.40584 1.25286 1.21457 0.85420 0.79077 0.78453 0.77942 1.19655 1.20545 1.18782 1.23024 0.95627 0.93055 0.97095 0.90641 0.91928 0.93547 0.91669 0.94782 0.83720 0.84047 0.91121 0.90206 0.91053 0.94519 0.95671 0.91610 0.93129 0.93490 0.99192 0.98963 0.92718 0.93918 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.84 71.98 0.56 -1.71 16 2 C -0.07 -1.31 0.76 -51.30 -0.04 -1.35 16 3 C 0.08 1.40 5.43 86.30 0.47 1.87 16 4 N -0.85 -11.63 9.30 -186.72 -1.74 -13.37 16 5 C -0.09 -1.98 5.88 31.80 0.19 -1.79 16 6 C 0.03 0.82 5.80 86.65 0.50 1.32 16 7 N -0.53 -16.54 5.26 -883.00 -4.65 -21.19 16 8 C 0.06 2.25 4.69 86.30 0.41 2.65 16 9 C -0.09 -3.85 5.21 30.59 0.16 -3.69 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.54 -32.22 9.11 25.60 0.23 -31.98 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 15 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.04 1.01 6.01 86.44 0.52 1.53 16 20 H 0.07 1.01 6.67 -2.39 -0.02 1.00 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 24 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.35 3.63 9.08 -89.70 -0.81 2.82 16 26 H 0.35 3.87 7.10 -89.69 -0.64 3.23 16 27 H 0.07 1.69 7.86 -2.39 -0.02 1.67 16 28 H 0.08 1.62 7.85 -2.39 -0.02 1.60 16 29 H 0.07 2.17 7.76 -2.39 -0.02 2.15 16 30 H 0.04 1.08 7.86 -2.39 -0.02 1.06 16 31 H 0.03 0.95 7.90 -2.38 -0.02 0.93 16 32 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 2.05 7.25 -2.39 -0.02 2.04 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.04 1.09 7.31 -2.39 -0.02 1.07 16 39 H 0.08 1.91 7.69 -2.39 -0.02 1.89 16 Total: -1.00 -65.67 305.34 -0.90 -66.57 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.44 Total: 9.69 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 3.61 Total: -31.19 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -6.10 Total: -92.42 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -65.67 -0.90 -66.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308457816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.270 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds