Wall clock time and date at job start Mon Mar 30 2020 03:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53118 * 109.52089 * 2 1 4 4 C 1.53038 * 109.27817 * 182.37685 * 3 2 1 5 5 N 1.46852 * 109.52224 * 59.18243 * 4 3 2 6 6 C 1.46897 * 111.00265 * 174.15490 * 5 4 3 7 7 C 1.53001 * 109.47161 * 169.99732 * 6 5 4 8 8 C 1.53000 * 109.46886 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.36936 * 120.00002 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00140 * 0.02562 * 10 9 8 12 12 C 1.38811 * 120.00367 * 180.02562 * 10 9 8 13 13 N 1.31619 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00444 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47261 * 59.99582 * 14 12 10 16 16 H 1.48502 * 109.47375 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46897 * 300.00142 * 14 12 10 18 18 C 1.46842 * 111.19929 * 298.25802 * 5 4 3 19 19 C 1.53039 * 109.52507 * 61.73921 * 18 5 4 20 20 H 1.08997 * 109.47792 * 59.99630 * 1 2 3 21 21 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47076 * 299.99381 * 1 2 3 23 23 H 1.08991 * 109.52545 * 120.12876 * 2 1 3 24 24 H 1.08998 * 109.49987 * 62.44200 * 3 2 1 25 25 H 1.09000 * 109.54004 * 302.34134 * 3 2 1 26 26 H 1.08996 * 109.46918 * 299.16680 * 4 3 2 27 27 H 1.09007 * 109.45408 * 179.19113 * 4 3 2 28 28 H 1.09001 * 109.46391 * 50.00172 * 6 5 4 29 29 H 1.09002 * 109.47472 * 290.00443 * 6 5 4 30 30 H 1.09001 * 109.46652 * 60.00605 * 7 6 5 31 31 H 1.08992 * 109.47514 * 300.00694 * 7 6 5 32 32 H 1.09002 * 109.47398 * 300.00496 * 8 7 6 33 33 H 1.09001 * 109.47194 * 60.00677 * 8 7 6 34 34 H 0.97000 * 120.00420 * 0.02562 * 9 8 7 35 35 H 0.96996 * 120.00586 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46578 * 181.75397 * 18 5 4 37 37 H 1.08995 * 109.46122 * 301.72485 * 18 5 4 38 38 H 1.08994 * 109.50793 * 180.87711 * 19 18 5 39 39 H 1.09003 * 109.50071 * 60.76301 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4371 -0.0599 5 7 4.0115 0.7426 -1.2765 6 6 5.4684 0.8376 -1.4384 7 6 5.9184 -0.0960 -2.5640 8 6 7.4359 0.0025 -2.7322 9 7 7.8666 -0.8909 -3.8104 10 6 9.1923 -0.9723 -4.1437 11 1 9.9204 -0.3781 -3.6115 12 6 9.6004 -1.8184 -5.1657 13 7 8.7133 -2.5429 -5.8140 14 14 11.4089 -1.9299 -5.6199 15 1 12.1879 -2.3886 -4.4417 16 1 11.5810 -2.8971 -6.7335 17 1 11.8958 -0.5930 -6.0451 18 6 3.5721 -0.6585 -1.2768 19 6 2.0430 -0.7151 -1.2531 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8942 -0.5156 0.8885 24 1 1.7151 1.9449 0.9109 25 1 1.6455 1.9704 -0.8679 26 1 3.9666 0.9225 0.8156 27 1 3.9376 2.4635 -0.0745 28 1 5.9570 0.5471 -0.5083 29 1 5.7404 1.8635 -1.6866 30 1 5.4297 0.1946 -3.4941 31 1 5.6464 -1.1218 -2.3159 32 1 7.7082 1.0284 -2.9803 33 1 7.9242 -0.2883 -1.8021 34 1 7.2128 -1.4249 -4.2883 35 1 8.9984 -3.1344 -6.5279 36 1 3.9400 -1.1544 -2.1751 37 1 3.9679 -1.1634 -0.3955 38 1 1.7174 -1.7551 -1.2376 39 1 1.6468 -0.2224 -2.1411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308636584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:14 Heat of formation + Delta-G solvation = -7.450890 kcal Electronic energy + Delta-G solvation = -15704.217345 eV Core-core repulsion = 13260.043706 eV Total energy + Delta-G solvation = -2444.173639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28881 -35.87355 -34.31965 -31.97558 -30.89399 -29.73252 -27.58197 -24.62241 -23.49390 -22.63507 -21.51395 -20.30815 -19.67189 -16.96851 -16.00447 -15.25079 -14.84110 -14.57225 -14.45463 -14.13787 -13.96352 -13.29900 -13.15162 -12.80137 -12.45725 -12.20256 -12.02091 -11.86835 -11.30240 -11.22676 -10.86287 -10.82287 -10.73571 -10.59610 -10.45609 -10.32468 -10.01849 -10.00546 -9.64438 -8.82391 -8.20459 -6.87516 -5.72201 -3.00777 3.46985 3.50701 3.52255 3.95930 4.62131 4.65609 4.69781 4.72088 5.10108 5.25323 5.31458 5.37546 5.44565 5.46842 5.54952 5.55343 5.61119 5.64855 5.77744 5.81104 5.86614 5.94239 5.97867 6.04715 6.08698 6.18641 6.25190 6.34691 6.36926 6.45063 6.90599 6.94819 7.19868 7.21896 7.73152 8.47016 9.57611 10.16744 10.51560 11.50857 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.066522 B = 0.004139 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.811275 B = 6763.199195 C = 7085.901473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.110 4.110 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.061 3.939 7 C -0.128 4.128 8 C 0.154 3.846 9 N -0.734 5.734 10 C -0.240 4.240 11 H 0.069 0.931 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.908 3.092 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C 0.047 3.953 19 C -0.112 4.112 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 6.311 12.580 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.067 4.067 7 C -0.166 4.166 8 C 0.026 3.974 9 N -0.378 5.378 10 C -0.371 4.371 11 H 0.087 0.913 12 C -0.211 4.211 13 N -0.583 5.583 14 Si 0.739 3.261 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.213 1.213 18 C -0.081 4.081 19 C -0.149 4.149 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.309 6.568 12.175 20.634 hybrid contribution 1.227 -0.676 0.280 1.428 sum -14.083 5.892 12.456 19.702 Atomic orbital electron populations 1.21807 0.95283 1.01550 1.01614 1.21195 0.95438 0.96329 0.98433 1.21637 0.94839 0.96447 1.01880 1.22070 0.95604 0.98949 0.90701 1.61986 1.13042 1.14196 1.37049 1.22071 0.86045 1.00747 0.97852 1.21877 0.97433 0.98958 0.98371 1.20587 0.91023 0.93979 0.91782 1.42354 1.06259 1.49832 1.39335 1.19210 0.84575 1.19852 1.13461 0.91262 1.24748 0.97688 0.99640 0.99025 1.69652 1.32396 1.30335 1.25958 0.86249 0.84889 0.77274 0.77673 1.21304 1.21668 1.21257 1.22237 0.95249 0.89124 1.01499 1.21663 0.95080 1.00080 0.98118 0.92595 0.92821 0.92964 0.91768 0.91925 0.91094 0.95243 0.90933 0.95063 0.90694 0.91117 0.91781 0.96373 0.96673 0.78301 0.93485 0.89426 0.95215 0.91733 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.20 37.15 0.34 -0.81 16 2 C -0.10 -0.90 2.79 -90.50 -0.25 -1.15 16 3 C -0.11 -1.05 5.38 -26.65 -0.14 -1.20 16 4 C 0.05 0.61 5.42 -3.83 -0.02 0.59 16 5 N -0.54 -7.11 4.81 -234.67 -1.13 -8.24 16 6 C 0.06 0.87 5.27 -3.83 -0.02 0.85 16 7 C -0.13 -2.21 4.58 -26.73 -0.12 -2.33 16 8 C 0.15 3.27 6.26 -4.04 -0.03 3.24 16 9 N -0.73 -19.52 5.60 -59.91 -0.34 -19.85 16 10 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 11 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 12 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 13 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 14 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 C 0.05 0.59 4.85 -3.84 -0.02 0.58 16 19 C -0.11 -1.19 5.38 -26.65 -0.14 -1.34 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.11 6.21 -51.93 -0.32 0.79 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.38 10.65 7.67 -40.82 -0.31 10.33 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.09 1.22 5.81 -51.93 -0.30 0.92 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -30.79 304.98 -9.06 -39.85 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.24 Total: 3.29 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.65 Total: -9.24 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.74 Total: -56.34 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.79 -9.06 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308636584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.400 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds