Wall clock time and date at job start Mon Mar 30 2020 03:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47344 * 2 1 4 4 C 1.53008 * 109.46870 * 119.99736 * 2 1 3 5 5 N 1.46897 * 109.47351 * 55.07424 * 4 2 1 6 6 C 1.48541 * 110.99670 * 59.35453 * 5 4 2 7 7 C 1.54936 * 103.22322 * 159.72254 * 6 5 4 8 8 C 1.54599 * 102.92244 * 322.58673 * 7 6 5 9 9 C 1.47897 * 111.00339 * 176.75224 * 5 4 2 10 10 N 1.46899 * 109.47356 * 239.99544 * 2 1 3 11 11 C 1.46894 * 110.99749 * 60.00132 * 10 2 1 12 12 C 1.50708 * 109.47081 * 180.02562 * 11 10 2 13 13 H 1.07999 * 119.99621 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99837 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00374 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99725 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47029 * 60.00098 * 16 14 12 18 18 H 1.48501 * 109.46766 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46811 * 299.99916 * 16 14 12 20 20 H 1.09000 * 109.46923 * 300.00164 * 1 2 3 21 21 H 1.08999 * 109.47031 * 60.00341 * 1 2 3 22 22 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47203 * 186.12310 * 3 2 1 24 24 H 1.08997 * 109.46549 * 306.12549 * 3 2 1 25 25 H 1.08997 * 109.46966 * 66.11589 * 3 2 1 26 26 H 1.08999 * 109.46920 * 175.07556 * 4 2 1 27 27 H 1.09002 * 109.46814 * 295.07399 * 4 2 1 28 28 H 1.08994 * 110.66743 * 278.15486 * 6 5 4 29 29 H 1.08989 * 110.66565 * 41.28982 * 6 5 4 30 30 H 1.08998 * 110.72562 * 204.23014 * 7 6 5 31 31 H 1.09002 * 110.72575 * 80.94655 * 7 6 5 32 32 H 1.09007 * 110.30777 * 263.04115 * 8 7 6 33 33 H 1.08996 * 110.39353 * 140.91943 * 8 7 6 34 34 H 1.09005 * 109.91306 * 333.51105 * 9 5 4 35 35 H 1.08997 * 109.91722 * 94.60453 * 9 5 4 36 36 H 1.00902 * 111.00140 * 183.95634 * 10 2 1 37 37 H 1.08997 * 109.47367 * 299.99814 * 11 10 2 38 38 H 1.08998 * 109.47517 * 60.00242 * 11 10 2 39 39 H 0.96997 * 120.00553 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.4556 -2.0676 1.3104 6 6 1.8169 -2.8597 0.1068 7 6 1.5964 -4.3228 0.5661 8 6 2.0765 -4.3000 2.0355 9 6 1.9864 -2.8240 2.4651 10 7 2.0197 -0.6926 -1.1994 11 6 1.5488 -0.0265 -2.4210 12 6 2.0694 -0.7639 -3.6278 13 1 2.6886 -1.6395 -3.4999 14 6 1.7561 -0.3201 -4.8950 15 7 1.0025 0.7464 -5.0507 16 14 2.4009 -1.2346 -6.3909 17 1 1.9041 -2.6338 -6.3677 18 1 1.9248 -0.5611 -7.6258 19 1 3.8857 -1.2360 -6.3681 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1245 1.4444 -0.1096 24 1 1.5900 1.9869 -0.8301 25 1 1.7689 1.9237 0.9396 26 1 3.1264 -0.7983 1.2064 27 1 1.7504 -0.1589 2.1371 28 1 1.1586 -2.6148 -0.7267 29 1 2.8597 -2.6944 -0.1637 30 1 2.2016 -5.0086 -0.0267 31 1 0.5412 -4.5902 0.5092 32 1 3.1061 -4.6515 2.1026 33 1 1.4261 -4.9153 2.6572 34 1 2.9769 -2.4528 2.7285 35 1 1.3136 -2.7224 3.3166 36 1 3.0263 -0.7627 -1.1908 37 1 0.4589 -0.0267 -2.4378 38 1 1.9122 1.0009 -2.4379 39 1 0.7824 1.0589 -5.9422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308639213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:19 Heat of formation + Delta-G solvation = -13.445601 kcal Electronic energy + Delta-G solvation = -16731.885273 eV Core-core repulsion = 14287.451684 eV Total energy + Delta-G solvation = -2444.433590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38409 -38.05965 -35.06685 -32.93910 -31.29873 -29.60304 -28.30030 -27.87256 -26.33079 -23.92330 -21.63118 -21.49899 -19.99686 -18.54705 -16.86906 -16.85308 -16.66005 -15.93621 -15.56781 -15.04325 -14.58271 -14.36858 -14.00030 -13.88614 -13.65085 -13.08596 -12.99156 -12.93339 -12.80840 -12.55299 -12.35835 -12.24900 -12.06860 -11.93839 -11.86226 -11.70302 -11.30232 -11.19103 -11.18366 -10.58858 -9.15652 -8.82500 -8.18276 -6.27755 1.40532 1.43629 1.51293 2.41284 3.15061 3.23517 3.60216 3.82753 3.95718 4.10352 4.19333 4.26285 4.40797 4.57998 4.59653 4.73423 4.75876 4.83404 4.93727 4.98136 4.99075 5.06816 5.09999 5.13104 5.23150 5.31462 5.36230 5.42984 5.47952 5.54522 5.65261 5.70202 6.10952 6.19857 6.33919 6.54694 6.80906 6.96775 7.42392 8.92716 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.007677 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.522869 B = 3646.202982 C = 4348.947589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.104 3.896 3 C -0.169 4.169 4 C 0.073 3.927 5 N -0.520 5.520 6 C 0.059 3.941 7 C -0.131 4.131 8 C -0.122 4.122 9 C 0.032 3.968 10 N -0.664 5.664 11 C 0.211 3.789 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.268 1.268 20 H 0.066 0.934 21 H 0.023 0.977 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.325 0.675 37 H 0.004 0.996 38 H -0.036 1.036 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -6.065 14.484 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.012 3.988 3 C -0.228 4.228 4 C -0.056 4.056 5 N -0.244 5.244 6 C -0.068 4.068 7 C -0.170 4.170 8 C -0.160 4.160 9 C -0.096 4.096 10 N -0.294 5.294 11 C 0.083 3.917 12 C -0.569 4.569 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.193 1.193 20 H 0.085 0.915 21 H 0.042 0.958 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.022 0.978 38 H -0.019 1.019 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.669 -6.343 14.408 15.831 hybrid contribution 1.556 0.810 -1.288 2.177 sum 3.225 -5.532 13.120 14.599 Atomic orbital electron populations 1.21606 0.94055 1.01859 0.99831 1.21047 0.95954 0.91112 0.90658 1.22404 1.00536 0.97956 1.01930 1.22198 0.95861 0.90693 0.96850 1.64731 1.54969 1.01732 1.02984 1.23150 0.99098 0.91230 0.93364 1.22600 1.01350 0.96646 0.96379 1.22352 1.01758 0.95861 0.96076 1.22932 0.98478 0.93651 0.94506 1.61138 1.14427 1.52493 1.01355 1.19192 0.94514 0.90948 0.87055 1.21565 1.31378 1.12344 0.91605 0.92049 1.25875 0.95482 0.95920 1.02322 1.70083 1.38644 1.25323 1.23459 0.85486 0.78827 0.78680 0.77892 1.19442 1.21025 1.19303 0.91487 0.95753 0.92193 0.93144 0.94611 0.90407 0.95189 0.89296 0.90374 0.95123 0.91109 0.91693 0.91039 0.90122 0.93919 0.89935 0.85842 0.97810 1.01877 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.03 71.98 0.58 -3.60 16 2 C 0.10 3.60 0.60 3.53 0.00 3.60 16 3 C -0.17 -5.61 8.04 71.98 0.58 -5.03 16 4 C 0.07 2.07 4.08 86.31 0.35 2.42 16 5 N -0.52 -14.93 4.39 -883.03 -3.88 -18.81 16 6 C 0.06 1.90 4.62 86.65 0.40 2.30 16 7 C -0.13 -3.38 7.06 31.80 0.22 -3.16 16 8 C -0.12 -2.53 6.93 31.47 0.22 -2.31 16 9 C 0.03 0.72 6.70 86.45 0.58 1.30 16 10 N -0.66 -27.69 2.65 -474.14 -1.25 -28.95 16 11 C 0.21 11.12 4.66 85.56 0.40 11.52 16 12 C -0.53 -30.20 9.32 25.60 0.24 -29.96 16 13 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 16 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 21 H 0.02 1.00 6.40 -2.39 -0.02 0.98 16 22 H 0.06 2.27 7.06 -2.39 -0.02 2.25 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.03 1.39 6.75 -2.39 -0.02 1.38 16 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.03 0.84 7.99 -2.39 -0.02 0.82 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 28 H 0.08 3.10 6.50 -2.39 -0.02 3.08 16 29 H 0.03 1.02 7.31 -2.39 -0.02 1.01 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 0.91 7.68 -2.38 -0.02 0.89 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.32 13.27 8.31 -89.69 -0.75 12.53 16 37 H 0.00 0.23 6.30 -2.39 -0.02 0.21 16 38 H -0.04 -2.08 6.44 -2.39 -0.02 -2.09 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -61.98 296.81 1.47 -60.51 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.26 Total: 19.57 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 4.03 Total: -22.34 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.85 Total: -104.53 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -61.98 1.47 -60.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308639213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.065 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds