Wall clock time and date at job start Mon Mar 30 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46896 * 113.73225 * 138.02731 * 4 3 2 6 6 C 1.46904 * 111.00342 * 154.99516 * 5 4 3 7 7 C 1.52991 * 109.47459 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47554 * 300.00268 * 7 6 5 9 9 C 1.53004 * 109.47038 * 60.00066 * 7 6 5 10 10 C 1.53004 * 109.47442 * 180.02562 * 7 6 5 11 11 C 1.50697 * 109.47361 * 180.02562 * 10 7 6 12 12 H 1.08003 * 119.99834 * 0.02562 * 11 10 7 13 13 C 1.37875 * 120.00091 * 179.97438 * 11 10 7 14 14 N 1.31511 * 120.00337 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99947 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46955 * 89.99628 * 15 13 11 17 17 H 1.48496 * 109.47011 * 209.99803 * 15 13 11 18 18 H 1.48499 * 109.46766 * 330.00121 * 15 13 11 19 19 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 20 20 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 21 21 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 23 23 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 24 24 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 25 25 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 26 26 H 1.00896 * 111.00158 * 278.94560 * 5 4 3 27 27 H 1.08993 * 109.47076 * 300.00432 * 6 5 4 28 28 H 1.09009 * 109.46771 * 59.99912 * 6 5 4 29 29 H 1.08999 * 109.46984 * 59.99834 * 8 7 6 30 30 H 1.08997 * 109.47219 * 179.97438 * 8 7 6 31 31 H 1.09004 * 109.46769 * 300.00065 * 8 7 6 32 32 H 1.09005 * 109.46671 * 60.00077 * 9 7 6 33 33 H 1.09001 * 109.47078 * 180.02562 * 9 7 6 34 34 H 1.08999 * 109.47262 * 300.00020 * 9 7 6 35 35 H 1.09002 * 109.46864 * 300.00011 * 10 7 6 36 36 H 1.08995 * 109.46850 * 60.00099 * 10 7 6 37 37 H 0.96994 * 120.00620 * 180.02562 * 14 13 11 38 38 H 1.09005 * 113.65869 * 23.13541 * 19 2 1 39 39 H 1.09002 * 113.92722 * 251.82174 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2491 1.8230 -2.1425 6 6 4.5751 1.6206 -2.7414 7 6 4.7748 2.6153 -3.8865 8 6 3.6963 2.3935 -4.9488 9 6 4.6720 4.0429 -3.3458 10 6 6.1557 2.4041 -4.5107 11 6 6.3526 3.3843 -5.6382 12 1 5.5712 4.0879 -5.8847 13 6 7.5308 3.3836 -6.3545 14 7 7.7029 4.2393 -7.3381 15 14 8.8826 2.1671 -5.9276 16 1 8.6936 0.9213 -6.7135 17 1 10.2041 2.7615 -6.2523 18 1 8.8245 1.8513 -4.4778 19 6 2.0019 -0.2232 -1.3646 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 2.4459 1.6803 0.9483 24 1 1.3003 2.1201 -0.3924 25 1 3.9474 0.5117 -0.5975 26 1 2.5226 1.7458 -2.8384 27 1 5.3435 1.7781 -1.9846 28 1 4.6482 0.6036 -3.1271 29 1 2.7124 2.5437 -4.5045 30 1 3.8383 3.1025 -5.7644 31 1 3.7695 1.3764 -5.3341 32 1 5.4405 4.2009 -2.5890 33 1 4.8138 4.7516 -4.1617 34 1 3.6881 4.1931 -2.9014 35 1 6.9244 2.5619 -3.7541 36 1 6.2285 1.3871 -4.8960 37 1 8.5315 4.2386 -7.8422 38 1 1.3025 0.0447 -2.1566 39 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379095239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:10 Heat of formation + Delta-G solvation = 23.345688 kcal Electronic energy + Delta-G solvation = -16127.758793 eV Core-core repulsion = 13684.920594 eV Total energy + Delta-G solvation = -2442.838200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05523 -37.39558 -33.69665 -32.07090 -29.45724 -27.55870 -26.40936 -26.18636 -25.32922 -23.11844 -21.75193 -20.05400 -17.81384 -16.79178 -16.09201 -15.95471 -15.14531 -14.58320 -14.09890 -13.83902 -13.72357 -13.06403 -12.83995 -12.74125 -12.40381 -12.27458 -11.94052 -11.76496 -11.21955 -11.06605 -10.93127 -10.85402 -10.77849 -10.49820 -10.31801 -9.81997 -9.67575 -9.34306 -9.03354 -8.89167 -8.49386 -8.17245 -5.99672 -3.95945 3.32399 3.40393 3.43990 3.75918 4.27507 4.48701 4.50205 4.85918 4.96427 5.14022 5.23651 5.33432 5.35079 5.51382 5.56509 5.62040 5.62277 5.72994 5.82214 5.92814 6.10705 6.15338 6.23413 6.40197 6.57648 6.68217 6.79444 6.83184 7.06913 7.13110 7.17929 7.27498 7.32471 7.45702 7.57533 7.85689 8.60003 9.06062 9.63468 11.13450 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.052905 B = 0.005298 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.123422 B = 5283.431767 C = 5471.216762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.487 5.487 3 C 0.009 3.991 4 C 0.065 3.935 5 N -0.675 5.675 6 C 0.067 3.933 7 C -0.050 4.050 8 C -0.131 4.131 9 C -0.118 4.118 10 C -0.004 4.004 11 C -0.507 4.507 12 H 0.078 0.922 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.029 4.029 20 H 0.034 0.966 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.341 0.659 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.015 0.985 36 H 0.008 0.992 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.691 -7.335 12.166 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.210 5.210 3 C -0.121 4.121 4 C -0.047 4.047 5 N -0.306 5.306 6 C -0.061 4.061 7 C -0.050 4.050 8 C -0.188 4.188 9 C -0.175 4.175 10 C -0.042 4.042 11 C -0.545 4.545 12 H 0.096 0.904 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.160 4.160 20 H 0.053 0.947 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.106 0.894 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.162 0.838 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.200 -7.212 12.971 18.593 hybrid contribution 0.288 -1.002 -1.028 1.464 sum -10.912 -8.213 11.943 18.143 Atomic orbital electron populations 1.22829 0.89763 1.02132 1.01041 1.68447 1.08937 1.19442 1.24126 1.24133 0.97103 0.90759 1.00056 1.23429 0.97560 0.90357 0.93359 1.60492 1.05219 1.51846 1.13035 1.22189 0.89549 0.97446 0.96960 1.20437 0.97313 0.94631 0.92658 1.21786 0.96191 1.01409 0.99414 1.21614 0.99658 0.96057 1.00179 1.19628 0.91675 0.96680 0.96232 1.21137 1.02167 1.17520 1.13708 0.90448 1.25014 0.98237 0.95457 0.94858 1.69904 1.26341 1.36834 1.21465 0.86850 0.81739 0.81723 0.79367 1.20518 1.21545 1.19107 1.24821 0.98255 1.01607 0.91306 0.94735 0.91416 0.91426 0.89375 0.90815 0.87910 0.83842 0.91423 0.95686 0.94735 0.91115 0.94114 0.94151 0.92125 0.93740 0.96673 0.97382 0.92888 0.91147 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.06 0.58 0.51 16 2 N -0.49 -5.34 6.56 -245.78 -1.61 -6.95 16 3 C 0.01 0.10 7.78 -2.77 -0.02 0.08 16 4 C 0.06 0.76 4.37 -69.11 -0.30 0.46 16 5 N -0.67 -9.07 5.84 -107.71 -0.63 -9.70 16 6 C 0.07 1.07 4.49 -3.83 -0.02 1.05 16 7 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 8 C -0.13 -2.35 7.89 37.16 0.29 -2.06 16 9 C -0.12 -2.23 8.06 37.16 0.30 -1.94 16 10 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 11 C -0.51 -13.94 8.21 -34.44 -0.28 -14.22 16 12 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 13 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.72 13.96 55.43 0.77 -26.95 16 15 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 C -0.03 -0.31 7.60 -2.65 -0.02 -0.33 16 20 H 0.03 0.30 7.62 -51.93 -0.40 -0.10 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 25 H 0.10 1.26 7.87 -51.93 -0.41 0.85 16 26 H 0.34 4.42 6.23 -39.29 -0.24 4.17 16 27 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 28 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 34 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 35 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -29.18 300.30 -8.25 -37.43 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.89 Total: 0.51 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 0.25 Total: -15.92 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -1.47 Total: -43.60 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.18 -8.25 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379095239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.775 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds