Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47395 * 2 1 4 4 N 1.46893 * 109.47423 * 239.99396 * 2 1 3 5 5 C 1.53007 * 109.46506 * 119.99246 * 2 1 3 6 6 C 1.53008 * 109.46723 * 179.97438 * 5 2 1 7 7 N 1.46903 * 109.46710 * 180.02562 * 6 5 2 8 8 C 1.46903 * 110.99590 * 190.00288 * 7 6 5 9 9 C 1.50697 * 109.47062 * 161.83379 * 8 7 6 10 10 H 1.08003 * 120.00185 * 354.36999 * 9 8 7 11 11 C 1.37875 * 119.99982 * 174.36084 * 9 8 7 12 12 N 1.31510 * 120.00078 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47311 * 60.00424 * 13 11 9 15 15 H 1.48504 * 109.47307 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47186 * 300.00466 * 13 11 9 17 17 C 1.46897 * 111.00263 * 66.04954 * 7 6 5 18 18 C 1.52997 * 117.50034 * 261.91095 * 17 7 6 19 19 C 1.52999 * 117.50125 * 193.24834 * 17 7 6 20 20 H 1.08994 * 109.47262 * 300.00598 * 1 2 3 21 21 H 1.09001 * 109.46723 * 60.00668 * 1 2 3 22 22 H 1.09001 * 109.47255 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47469 * 179.97438 * 3 2 1 24 24 H 1.09006 * 109.47010 * 300.00013 * 3 2 1 25 25 H 1.09005 * 109.47659 * 59.99071 * 3 2 1 26 26 H 1.00908 * 110.99954 * 300.00223 * 4 2 1 27 27 H 1.00899 * 111.00262 * 63.95797 * 4 2 1 28 28 H 1.09003 * 109.47212 * 60.00739 * 5 2 1 29 29 H 1.08994 * 109.47487 * 300.00018 * 5 2 1 30 30 H 1.08994 * 109.47230 * 300.00269 * 6 5 2 31 31 H 1.09001 * 109.47071 * 60.00669 * 6 5 2 32 32 H 1.09002 * 109.46847 * 281.83424 * 8 7 6 33 33 H 1.08995 * 109.47379 * 41.83637 * 8 7 6 34 34 H 0.97000 * 119.99959 * 180.02562 * 12 11 9 35 35 H 1.09005 * 115.54791 * 47.57726 * 17 7 6 36 36 H 1.09000 * 117.49441 * 359.97438 * 18 17 7 37 37 H 1.08995 * 117.50263 * 145.01542 * 18 17 7 38 38 H 1.08994 * 117.49727 * 214.97908 * 19 17 7 39 39 H 1.08998 * 117.49758 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0399 -0.7211 1.2494 6 6 3.5699 -0.7217 1.2492 7 7 4.0595 -1.4146 2.4485 8 6 5.5084 -1.2320 2.6073 9 6 5.9023 -1.5510 4.0265 10 1 5.1421 -1.7701 4.7617 11 6 7.2333 -1.5634 4.3863 12 7 8.1589 -1.2963 3.4912 13 14 7.7216 -1.9596 6.1453 14 1 7.2421 -3.3202 6.4977 15 1 9.2002 -1.9071 6.2724 16 1 7.1106 -0.9660 7.0644 17 6 3.7095 -2.8409 2.4122 18 6 2.4693 -3.2840 3.1909 19 6 3.8656 -3.6398 3.7077 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6962 -1.6481 -1.2225 27 1 1.7504 -0.1991 -2.0372 28 1 1.6766 -1.7489 1.2495 29 1 1.6765 -0.2072 2.1393 30 1 3.9329 -1.2359 0.3593 31 1 3.9337 0.3058 1.2489 32 1 6.0356 -1.8990 1.9252 33 1 5.7714 -0.1988 2.3808 34 1 9.0953 -1.3054 3.7442 35 1 3.9254 -3.3542 1.4752 36 1 1.9134 -2.5172 3.7305 37 1 1.8695 -4.0890 2.7665 38 1 4.1838 -4.6788 3.6229 39 1 4.2284 -3.1072 4.5868 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379486657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = 20.458012 kcal Electronic energy + Delta-G solvation = -16389.349250 eV Core-core repulsion = 13946.385831 eV Total energy + Delta-G solvation = -2442.963419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.36793 -36.92563 -33.46185 -32.37030 -29.81909 -28.72748 -27.25457 -26.05997 -22.35784 -22.10904 -21.50643 -19.27789 -18.96512 -16.44363 -15.79370 -15.09223 -14.92709 -14.54401 -14.29985 -14.02721 -13.22776 -12.88545 -12.74662 -12.42715 -12.10334 -11.84417 -11.67863 -11.46557 -11.28303 -11.00916 -10.79493 -10.72623 -10.52739 -10.47579 -10.19407 -9.77854 -9.39119 -9.02139 -8.98561 -8.57319 -8.31457 -7.11192 -5.92750 -3.92436 3.38076 3.42072 3.44662 4.47513 4.56595 4.68400 4.80381 5.03580 5.06227 5.30620 5.42184 5.58552 5.63825 5.76386 5.85302 5.86462 5.91033 5.96932 6.08304 6.09770 6.23037 6.27040 6.34931 6.43854 6.50069 6.74707 6.79748 6.83821 7.10348 7.28441 7.37038 7.51735 7.54708 7.95921 8.24808 8.35917 8.68803 9.13929 9.69798 11.17887 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.006639 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.942957 B = 4216.318275 C = 4630.654360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.111 3.889 3 C -0.141 4.141 4 N -0.836 5.836 5 C -0.096 4.096 6 C 0.068 3.932 7 N -0.516 5.516 8 C 0.197 3.803 9 C -0.497 4.497 10 H 0.067 0.933 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.033 3.967 18 C -0.187 4.187 19 C -0.159 4.159 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.338 0.662 27 H 0.334 0.666 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.064 0.936 32 H -0.004 1.004 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.703 0.526 -6.582 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.018 3.982 3 C -0.199 4.199 4 N -0.365 5.365 5 C -0.135 4.135 6 C -0.060 4.060 7 N -0.240 5.240 8 C 0.072 3.928 9 C -0.536 4.536 10 H 0.085 0.915 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.203 1.203 17 C -0.077 4.077 18 C -0.225 4.225 19 C -0.196 4.196 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.014 0.986 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.973 0.906 -5.893 14.278 hybrid contribution -0.242 -0.683 -0.105 0.732 sum -13.216 0.223 -5.999 14.515 Atomic orbital electron populations 1.22625 0.97682 1.01561 1.01866 1.20864 0.91191 0.94672 0.91492 1.21871 1.02643 0.94345 1.00993 1.58883 1.67625 1.06096 1.03893 1.21567 0.96930 0.99835 0.95128 1.21943 0.93544 0.98747 0.91808 1.61923 1.18499 1.07472 1.36129 1.19666 0.80126 0.96136 0.96896 1.21240 0.91419 1.45920 0.94980 0.91516 1.24982 0.96637 0.95904 0.97236 1.69953 1.00454 1.50108 1.33621 0.86643 0.77169 0.78897 0.85192 1.20275 1.21482 1.20297 1.22003 1.00893 0.90396 0.94397 1.23014 0.91395 1.02493 1.05627 1.23152 0.97332 0.99128 0.99997 0.92093 0.93192 0.92908 0.91174 0.93522 0.92217 0.84959 0.85411 0.92200 0.91549 0.94715 0.91751 0.98636 0.95891 0.93054 0.91657 0.89194 0.90579 0.90425 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.76 37.16 0.33 -1.49 16 2 C 0.11 1.35 0.91 -131.61 -0.12 1.23 16 3 C -0.14 -1.72 8.38 37.15 0.31 -1.41 16 4 N -0.84 -9.70 8.11 0.74 0.01 -9.69 16 5 C -0.10 -1.45 4.25 -26.72 -0.11 -1.56 16 6 C 0.07 1.27 4.44 -3.82 -0.02 1.26 16 7 N -0.52 -11.38 4.58 -228.08 -1.05 -12.42 16 8 C 0.20 5.25 4.75 -4.98 -0.02 5.22 16 9 C -0.50 -13.97 7.82 -34.44 -0.27 -14.24 16 10 H 0.07 1.84 5.55 -52.48 -0.29 1.55 16 11 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 12 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.03 0.66 4.19 -67.72 -0.28 0.37 16 18 C -0.19 -3.20 9.31 -26.69 -0.25 -3.45 16 19 C -0.16 -3.16 9.41 -26.69 -0.25 -3.41 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.98 6.43 -51.93 -0.33 0.65 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.34 3.65 9.00 -39.29 -0.35 3.30 16 27 H 0.33 3.25 8.98 -39.29 -0.35 2.90 16 28 H 0.06 0.90 6.61 -51.93 -0.34 0.56 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.68 7.58 -51.93 -0.39 0.29 16 31 H 0.06 1.25 6.13 -51.93 -0.32 0.94 16 32 H 0.00 -0.13 8.02 -51.93 -0.42 -0.54 16 33 H 0.02 0.65 7.76 -51.93 -0.40 0.25 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.12 2.61 5.32 -51.93 -0.28 2.33 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -29.67 305.63 -8.35 -38.03 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.85 Total: 5.19 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.79 Total: -16.06 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.30 Total: -48.59 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.67 -8.35 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379486657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.483 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds