Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46778 * 2 1 4 4 C 1.52997 * 109.47354 * 119.99650 * 2 1 3 5 5 C 1.53004 * 109.46851 * 62.78459 * 4 2 1 6 6 H 1.08994 * 109.46959 * 306.91187 * 5 4 2 7 7 C 1.53005 * 109.47141 * 186.91359 * 5 4 2 8 8 C 1.53003 * 109.47104 * 66.91283 * 5 4 2 9 9 H 1.08997 * 109.82166 * 54.17675 * 8 5 4 10 10 C 1.54377 * 109.90496 * 175.10774 * 8 5 4 11 11 C 1.55302 * 102.25269 * 140.91411 * 10 8 5 12 12 C 1.54944 * 100.94184 * 325.86408 * 11 10 8 13 13 H 1.08993 * 110.31618 * 277.52918 * 12 11 10 14 14 C 1.50701 * 110.30976 * 155.45412 * 12 11 10 15 15 H 1.08000 * 119.99812 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00193 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00083 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00014 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47301 * 60.00375 * 18 16 14 20 20 H 1.48506 * 109.47061 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47127 * 300.00222 * 18 16 14 22 22 O 1.43237 * 109.83131 * 293.28703 * 8 5 4 23 23 H 1.09002 * 109.46809 * 184.52518 * 1 2 3 24 24 H 1.09005 * 109.47195 * 304.52134 * 1 2 3 25 25 H 1.08995 * 109.47562 * 64.52415 * 1 2 3 26 26 H 1.08998 * 109.47431 * 240.00338 * 2 1 3 27 27 H 1.08998 * 109.46835 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.46973 * 300.00134 * 3 2 1 29 29 H 1.08998 * 109.46863 * 59.99990 * 3 2 1 30 30 H 1.09004 * 109.47420 * 302.78564 * 4 2 1 31 31 H 1.08998 * 109.47099 * 182.78014 * 4 2 1 32 32 H 1.08997 * 109.46839 * 64.84811 * 7 5 4 33 33 H 1.09000 * 109.46809 * 184.85110 * 7 5 4 34 34 H 1.09000 * 109.47251 * 304.85175 * 7 5 4 35 35 H 1.09006 * 110.84838 * 22.72097 * 10 8 5 36 36 H 1.09002 * 110.84885 * 259.10586 * 10 8 5 37 37 H 1.09002 * 111.12853 * 207.94918 * 11 10 8 38 38 H 1.09000 * 111.12443 * 83.78581 * 11 10 8 39 39 H 0.96993 * 120.00776 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.5880 -2.1825 1.2147 6 1 0.5091 -2.2256 1.0660 7 6 1.9477 -2.8590 2.5391 8 6 2.2909 -2.9067 0.0647 9 1 3.3698 -2.7790 0.1520 10 6 1.9371 -4.4091 0.0954 11 6 1.7809 -4.7417 -1.4135 12 6 1.1893 -3.4131 -1.9479 13 1 0.1126 -3.3842 -1.7814 14 6 1.4952 -3.2571 -3.4153 15 1 2.0555 -4.0208 -3.9343 16 6 1.0589 -2.1400 -4.0955 17 7 0.3762 -1.2103 -3.4637 18 14 1.4374 -1.9470 -5.9145 19 1 0.8421 -3.0804 -6.6670 20 1 0.8629 -0.6692 -6.4069 21 1 2.9087 -1.9377 -6.1157 22 8 1.8391 -2.3811 -1.1888 23 1 -0.3633 -1.0245 0.0811 24 1 -0.3634 0.5824 0.8467 25 1 -0.3634 0.4420 -0.9277 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 1.6365 -0.2369 2.1386 31 1 3.1289 -0.6782 1.2745 32 1 1.3807 -2.3984 3.3481 33 1 1.7042 -3.9200 2.4830 34 1 3.0143 -2.7405 2.7298 35 1 1.0012 -4.5765 0.6285 36 1 2.7464 -4.9892 0.5388 37 1 1.0872 -5.5690 -1.5637 38 1 2.7472 -4.9538 -1.8712 39 1 0.0696 -0.4242 -3.9420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379510726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -77.935710 kcal Electronic energy + Delta-G solvation = -17181.638920 eV Core-core repulsion = 14702.116078 eV Total energy + Delta-G solvation = -2479.522842 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.76167 -35.89730 -33.09393 -32.10018 -30.68209 -27.78213 -26.40985 -26.00276 -24.38579 -21.70431 -20.21153 -19.57907 -18.80363 -16.50483 -15.43360 -15.12727 -14.45230 -13.98240 -13.57613 -13.55089 -12.88785 -12.36036 -12.27530 -12.09848 -11.84700 -11.73387 -11.48714 -11.39796 -10.95988 -10.84472 -10.72229 -10.57505 -10.41044 -10.21389 -10.04089 -9.75751 -9.59833 -9.48475 -9.25312 -8.95958 -8.44325 -7.74140 -5.94124 -4.06144 3.34947 3.39676 3.42325 4.46910 5.00200 5.27877 5.38544 5.47930 5.64258 5.75579 5.79391 5.83571 5.92579 6.01125 6.05651 6.12426 6.27516 6.32269 6.37245 6.40662 6.49545 6.55282 6.60014 6.62879 6.68292 6.73065 6.74834 6.83339 6.87135 7.06227 7.14652 7.36490 7.63458 7.82439 7.95762 8.37132 8.74008 9.10824 9.63563 11.11891 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.010913 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.229560 B = 2565.162809 C = 3435.553379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C -0.141 4.141 4 C -0.096 4.096 5 C -0.105 4.105 6 H 0.075 0.925 7 C -0.145 4.145 8 C 0.081 3.919 9 H 0.052 0.948 10 C -0.151 4.151 11 C -0.149 4.149 12 C 0.211 3.789 13 H 0.026 0.974 14 C -0.534 4.534 15 H 0.058 0.942 16 C 0.081 3.919 17 N -0.856 5.856 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.346 6.346 23 H 0.054 0.946 24 H 0.022 0.978 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -0.499 8.909 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.124 4.124 3 C -0.198 4.198 4 C -0.134 4.134 5 C -0.124 4.124 6 H 0.093 0.907 7 C -0.202 4.202 8 C 0.022 3.978 9 H 0.070 0.930 10 C -0.189 4.189 11 C -0.187 4.187 12 C 0.156 3.844 13 H 0.044 0.956 14 C -0.571 4.571 15 H 0.076 0.924 16 C -0.125 4.125 17 N -0.492 5.492 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 O -0.266 6.266 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.817 -0.105 8.829 9.015 hybrid contribution 0.195 -0.046 -0.817 0.841 sum 2.012 -0.151 8.012 8.262 Atomic orbital electron populations 1.21587 0.95776 1.00994 0.99567 1.21368 0.96001 0.94398 1.00659 1.21818 0.99881 0.97843 1.00272 1.21536 0.99430 0.94666 0.97720 1.21640 1.01251 0.95303 0.94177 0.90691 1.21838 1.00867 1.00379 0.97164 1.22504 0.96601 0.91141 0.87558 0.92964 1.23135 1.00605 0.97100 0.98016 1.23331 1.01108 1.00722 0.93533 1.20478 0.92229 0.81057 0.90668 0.95645 1.21051 1.37276 1.06234 0.92576 0.92377 1.25009 0.94131 0.95711 0.97661 1.70004 1.34874 1.08700 1.35605 0.86780 0.78721 0.77254 0.85848 1.20348 1.21302 1.20278 1.88754 1.76572 1.35803 1.25455 0.92724 0.95847 0.92715 0.85659 0.93865 0.93218 0.94425 0.93825 0.93250 0.93371 0.92792 0.93255 0.91828 0.92324 0.92370 0.91900 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.02 37.16 0.34 -2.05 16 2 C -0.11 -2.06 2.52 -90.62 -0.23 -2.29 16 3 C -0.14 -2.41 9.19 37.16 0.34 -2.07 16 4 C -0.10 -1.63 4.16 -26.73 -0.11 -1.74 16 5 C -0.11 -1.80 2.06 -90.61 -0.19 -1.99 16 6 H 0.07 1.40 6.09 -51.93 -0.32 1.08 16 7 C -0.15 -2.01 8.97 37.16 0.33 -1.68 16 8 C 0.08 1.58 3.06 -26.01 -0.08 1.50 16 9 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 10 C -0.15 -2.69 5.32 -24.79 -0.13 -2.82 16 11 C -0.15 -3.10 6.53 -24.48 -0.16 -3.26 16 12 C 0.21 5.31 3.22 -26.86 -0.09 5.22 16 13 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 14 C -0.53 -14.77 8.80 -34.44 -0.30 -15.08 16 15 H 0.06 1.58 7.76 -52.49 -0.41 1.18 16 16 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 17 N -0.86 -24.21 13.05 55.43 0.72 -23.48 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 O -0.35 -8.40 7.10 -35.23 -0.25 -8.65 16 23 H 0.05 1.13 6.15 -51.93 -0.32 0.81 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.13 2.97 5.16 -51.93 -0.27 2.70 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.08 7.29 -51.93 -0.38 0.70 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.31 8.04 -51.93 -0.42 0.90 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 300.49 15.07 4.53 4.53 Total: -1.00 -27.70 300.49 -7.47 -35.17 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.08 Total: 0.27 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -0.37 Total: -24.10 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.72 Total: -23.48 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.25 Total: -8.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.70 -7.47 -35.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379510726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.763 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds