Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46778 * 2 1 4 4 C 1.52997 * 109.47354 * 119.99650 * 2 1 3 5 5 C 1.53004 * 109.46851 * 62.78459 * 4 2 1 6 6 H 1.08994 * 109.46959 * 306.91187 * 5 4 2 7 7 C 1.53005 * 109.47141 * 186.91359 * 5 4 2 8 8 C 1.53003 * 109.47104 * 66.91283 * 5 4 2 9 9 H 1.08997 * 109.82166 * 54.17675 * 8 5 4 10 10 C 1.54377 * 109.90496 * 175.10774 * 8 5 4 11 11 C 1.55302 * 102.25269 * 140.91411 * 10 8 5 12 12 C 1.54944 * 100.94184 * 325.86408 * 11 10 8 13 13 H 1.08993 * 110.31618 * 277.52918 * 12 11 10 14 14 C 1.50701 * 110.30976 * 155.45412 * 12 11 10 15 15 H 1.08000 * 119.99812 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00193 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00083 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00014 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47301 * 60.00375 * 18 16 14 20 20 H 1.48506 * 109.47061 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47127 * 300.00222 * 18 16 14 22 22 O 1.43237 * 109.83131 * 293.28703 * 8 5 4 23 23 H 1.09002 * 109.46809 * 184.52518 * 1 2 3 24 24 H 1.09005 * 109.47195 * 304.52134 * 1 2 3 25 25 H 1.08995 * 109.47562 * 64.52415 * 1 2 3 26 26 H 1.08998 * 109.47431 * 240.00338 * 2 1 3 27 27 H 1.08998 * 109.46835 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.46973 * 300.00134 * 3 2 1 29 29 H 1.08998 * 109.46863 * 59.99990 * 3 2 1 30 30 H 1.09004 * 109.47420 * 302.78564 * 4 2 1 31 31 H 1.08998 * 109.47099 * 182.78014 * 4 2 1 32 32 H 1.08997 * 109.46839 * 64.84811 * 7 5 4 33 33 H 1.09000 * 109.46809 * 184.85110 * 7 5 4 34 34 H 1.09000 * 109.47251 * 304.85175 * 7 5 4 35 35 H 1.09006 * 110.84838 * 22.72097 * 10 8 5 36 36 H 1.09002 * 110.84885 * 259.10586 * 10 8 5 37 37 H 1.09002 * 111.12853 * 207.94918 * 11 10 8 38 38 H 1.09000 * 111.12443 * 83.78581 * 11 10 8 39 39 H 0.96993 * 120.00776 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.5880 -2.1825 1.2147 6 1 0.5091 -2.2256 1.0660 7 6 1.9477 -2.8590 2.5391 8 6 2.2909 -2.9067 0.0647 9 1 3.3698 -2.7790 0.1520 10 6 1.9371 -4.4091 0.0954 11 6 1.7809 -4.7417 -1.4135 12 6 1.1893 -3.4131 -1.9479 13 1 0.1126 -3.3842 -1.7814 14 6 1.4952 -3.2571 -3.4153 15 1 2.0555 -4.0208 -3.9343 16 6 1.0589 -2.1400 -4.0955 17 7 0.3762 -1.2103 -3.4637 18 14 1.4374 -1.9470 -5.9145 19 1 0.8421 -3.0804 -6.6670 20 1 0.8629 -0.6692 -6.4069 21 1 2.9087 -1.9377 -6.1157 22 8 1.8391 -2.3811 -1.1888 23 1 -0.3633 -1.0245 0.0811 24 1 -0.3634 0.5824 0.8467 25 1 -0.3634 0.4420 -0.9277 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 1.6365 -0.2369 2.1386 31 1 3.1289 -0.6782 1.2745 32 1 1.3807 -2.3984 3.3481 33 1 1.7042 -3.9200 2.4830 34 1 3.0143 -2.7405 2.7298 35 1 1.0012 -4.5765 0.6285 36 1 2.7464 -4.9892 0.5388 37 1 1.0872 -5.5690 -1.5637 38 1 2.7472 -4.9538 -1.8712 39 1 0.0696 -0.4242 -3.9420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379510726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -92.165613 kcal Electronic energy + Delta-G solvation = -17182.255975 eV Core-core repulsion = 14702.116078 eV Total energy + Delta-G solvation = -2480.139897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37317 -37.45790 -34.84922 -33.87965 -32.36033 -29.57631 -27.88173 -27.31475 -26.24556 -23.27970 -21.95191 -21.11276 -20.28830 -18.52377 -17.10159 -16.81373 -16.37249 -15.44055 -15.20708 -15.05721 -14.42929 -13.99948 -13.88029 -13.65951 -13.52850 -13.05034 -12.91214 -12.85067 -12.75534 -12.45145 -12.39834 -12.17724 -12.08630 -11.95449 -11.63092 -11.32237 -11.12371 -11.05520 -10.86561 -10.78086 -10.45747 -9.57015 -8.04623 -6.24001 1.41567 1.43231 1.50138 2.44556 3.12826 3.68554 3.90162 3.98319 4.12473 4.28419 4.32779 4.44949 4.52338 4.63439 4.68998 4.80254 4.86528 4.88145 4.93294 4.98613 5.05268 5.08898 5.13161 5.14814 5.17676 5.22182 5.26008 5.38049 5.40045 5.57498 5.63111 5.71997 5.80001 5.86142 6.15586 6.34624 6.72326 7.20049 7.49754 8.99931 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.010913 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.229560 B = 2565.162809 C = 3435.553379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.135 4.135 4 C -0.091 4.091 5 C -0.100 4.100 6 H 0.055 0.945 7 C -0.138 4.138 8 C 0.068 3.932 9 H 0.055 0.945 10 C -0.137 4.137 11 C -0.144 4.144 12 C 0.205 3.795 13 H -0.012 1.012 14 C -0.559 4.559 15 H 0.055 0.945 16 C 0.032 3.968 17 N -0.880 5.880 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.275 1.275 22 O -0.368 6.368 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.026 0.974 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -0.773 10.526 10.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.127 4.127 3 C -0.193 4.193 4 C -0.128 4.128 5 C -0.119 4.119 6 H 0.073 0.927 7 C -0.195 4.195 8 C 0.009 3.991 9 H 0.072 0.928 10 C -0.174 4.174 11 C -0.182 4.182 12 C 0.150 3.850 13 H 0.006 0.994 14 C -0.596 4.596 15 H 0.074 0.926 16 C -0.171 4.171 17 N -0.516 5.516 18 Si 0.774 3.226 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.200 1.200 22 O -0.288 6.288 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.752 -0.392 10.453 10.817 hybrid contribution -0.099 0.047 -1.300 1.305 sum 2.653 -0.345 9.153 9.536 Atomic orbital electron populations 1.21463 0.96285 0.99897 0.99204 1.21263 0.95546 0.95717 1.00132 1.21754 1.00349 0.96354 1.00824 1.21493 0.99777 0.94435 0.97087 1.21562 0.99662 0.95626 0.95052 0.92679 1.21777 1.01896 1.00588 0.95228 1.22810 0.96927 0.92672 0.86649 0.92753 1.23090 1.02313 0.96045 0.95967 1.23221 1.00743 0.98683 0.95576 1.20279 0.90627 0.83795 0.90300 0.99410 1.21425 1.37375 1.06384 0.94423 0.92647 1.25758 0.94078 0.95504 1.01780 1.70146 1.35627 1.08914 1.36949 0.85791 0.78450 0.77371 0.80975 1.19458 1.20987 1.20042 1.88737 1.76462 1.36009 1.27570 0.94694 0.93032 0.95518 0.90206 0.93074 0.94564 0.91936 0.91544 0.92615 0.91726 0.91972 0.92049 0.90780 0.89148 0.91229 0.92181 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 9.02 71.98 0.65 -3.76 16 2 C -0.11 -4.19 2.52 -10.79 -0.03 -4.22 16 3 C -0.14 -4.50 9.19 71.98 0.66 -3.84 16 4 C -0.09 -2.90 4.16 30.59 0.13 -2.77 16 5 C -0.10 -3.27 2.06 -10.79 -0.02 -3.30 16 6 H 0.05 2.03 6.09 -2.39 -0.01 2.01 16 7 C -0.14 -3.32 8.97 71.98 0.65 -2.68 16 8 C 0.07 2.59 3.06 31.06 0.10 2.69 16 9 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 10 C -0.14 -4.62 5.32 31.85 0.17 -4.45 16 11 C -0.14 -5.95 6.53 32.05 0.21 -5.74 16 12 C 0.21 10.70 3.22 30.51 0.10 10.80 16 13 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 14 C -0.56 -31.81 8.80 25.60 0.23 -31.59 16 15 H 0.06 3.08 7.76 -2.91 -0.02 3.06 16 16 C 0.03 1.83 5.43 84.65 0.46 2.29 16 17 N -0.88 -51.77 13.05 21.45 0.28 -51.49 16 18 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 O -0.37 -18.35 7.10 -148.98 -1.06 -19.41 16 23 H 0.03 1.49 6.15 -2.39 -0.01 1.47 16 24 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 3.91 5.16 -2.39 -0.01 3.90 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.40 6.57 -2.39 -0.02 1.39 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 2.35 7.29 -2.38 -0.02 2.33 16 36 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -61.90 300.49 5.52 -56.38 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.98 Total: 14.50 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 3.29 Total: -46.56 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.28 Total: -51.49 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.06 Total: -19.41 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -61.90 5.52 -56.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379510726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.786 kcal (2) G-P(sol) polarization free energy of solvation -61.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds