Wall clock time and date at job start Mon Mar 30 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.53004 * 109.47086 * 120.00064 * 2 1 3 5 5 C 1.52995 * 109.47412 * 175.00293 * 4 2 1 6 6 H 1.08998 * 109.47401 * 54.99602 * 5 4 2 7 7 C 1.52997 * 109.46946 * 295.00015 * 5 4 2 8 8 C 1.52998 * 109.47449 * 174.99950 * 5 4 2 9 9 H 1.09002 * 109.87039 * 59.29688 * 8 5 4 10 10 C 1.54104 * 109.88136 * 180.30570 * 8 5 4 11 11 C 1.54805 * 104.18715 * 121.60340 * 10 8 5 12 12 C 1.54993 * 102.09764 * 20.87963 * 11 10 8 13 13 H 1.09000 * 110.61715 * 81.47543 * 12 11 10 14 14 C 1.50690 * 110.61965 * 204.31825 * 12 11 10 15 15 H 1.07999 * 120.00506 * 0.02562 * 14 12 11 16 16 C 1.37880 * 120.00272 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99644 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00416 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46829 * 90.00000 * 18 16 14 20 20 H 1.48494 * 109.47122 * 210.00109 * 18 16 14 21 21 H 1.48493 * 109.47040 * 330.00472 * 18 16 14 22 22 O 1.43741 * 110.00290 * 298.20954 * 8 5 4 23 23 H 1.09000 * 109.47224 * 300.00255 * 1 2 3 24 24 H 1.09003 * 109.46935 * 60.00245 * 1 2 3 25 25 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47224 * 239.99745 * 2 1 3 27 27 H 1.08995 * 109.47186 * 300.00018 * 3 2 1 28 28 H 1.09000 * 109.47230 * 59.99749 * 3 2 1 29 29 H 1.08998 * 109.47329 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47436 * 54.99887 * 4 2 1 31 31 H 1.09004 * 109.47039 * 295.00127 * 4 2 1 32 32 H 1.09002 * 109.47694 * 59.99543 * 7 5 4 33 33 H 1.08999 * 109.47495 * 179.97438 * 7 5 4 34 34 H 1.09008 * 109.46972 * 299.99512 * 7 5 4 35 35 H 1.09004 * 110.48326 * 240.27942 * 10 8 5 36 36 H 1.09003 * 110.48376 * 2.92383 * 10 8 5 37 37 H 1.09004 * 110.90856 * 139.08289 * 11 10 8 38 38 H 1.09008 * 110.90524 * 262.68042 * 11 10 8 39 39 H 0.96999 * 120.00288 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 3.9953 0.1611 1.0528 7 6 3.9649 -1.7251 0.0128 8 6 4.0850 -1.4394 2.4920 9 1 3.6487 -2.4272 2.6399 10 6 5.6215 -1.5472 2.4434 11 6 6.0987 -0.7169 3.6597 12 6 4.8318 -0.6903 4.5521 13 1 4.7486 -1.6120 5.1281 14 6 4.8529 0.5059 5.4682 15 1 5.6820 1.1972 5.4348 16 6 3.8131 0.7188 6.3484 17 7 2.8032 -0.1226 6.3887 18 14 3.8396 2.2013 7.4845 19 1 3.1793 3.3503 6.8143 20 1 3.1146 1.8765 8.7390 21 1 5.2460 2.5557 7.8030 22 8 3.7514 -0.5867 3.5999 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.5942 -1.2918 -0.9162 33 1 5.0512 -1.8030 -0.0311 34 1 3.5343 -2.7174 0.1481 35 1 5.9344 -2.5865 2.5446 36 1 6.0048 -1.1209 1.5163 37 1 6.9238 -1.2137 4.1703 38 1 6.3816 0.2910 3.3557 39 1 2.0718 0.0268 7.0082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379510732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:17 Heat of formation + Delta-G solvation = -83.314422 kcal Electronic energy + Delta-G solvation = -16622.081701 eV Core-core repulsion = 14142.325621 eV Total energy + Delta-G solvation = -2479.756080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.66204 -36.53950 -33.13539 -32.07878 -30.71727 -27.76179 -26.91928 -26.24576 -24.51325 -21.97447 -20.39593 -19.45913 -18.98865 -16.54627 -15.50491 -14.92183 -14.81725 -14.39731 -13.87007 -13.63873 -13.10524 -12.72094 -12.44099 -12.36765 -12.04217 -11.78921 -11.64788 -11.41789 -11.07202 -10.96631 -10.84366 -10.81337 -10.52508 -10.35591 -10.12358 -10.07917 -9.92364 -9.57874 -9.39967 -8.99994 -8.55231 -7.93027 -5.99050 -4.11083 3.32787 3.38932 3.41634 4.44246 5.00758 5.02419 5.18422 5.23507 5.43909 5.56296 5.59350 5.73628 5.77251 5.83923 5.84668 5.90869 5.98175 6.05088 6.14199 6.23388 6.25171 6.29655 6.39251 6.42904 6.46555 6.51763 6.59512 6.73183 6.75391 6.85120 6.88870 7.03064 7.06868 7.57469 7.91903 8.29653 8.67330 9.02676 9.59232 11.09019 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.008312 C = 0.006852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.909126 B = 3367.729661 C = 4085.557912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.087 4.087 6 H 0.073 0.927 7 C -0.146 4.146 8 C 0.075 3.925 9 H 0.042 0.958 10 C -0.152 4.152 11 C -0.148 4.148 12 C 0.209 3.791 13 H 0.026 0.974 14 C -0.527 4.527 15 H 0.062 0.938 16 C 0.077 3.923 17 N -0.865 5.865 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.352 6.352 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -1.674 -11.784 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.105 4.105 6 H 0.092 0.908 7 C -0.204 4.204 8 C 0.016 3.984 9 H 0.060 0.940 10 C -0.190 4.190 11 C -0.186 4.186 12 C 0.154 3.846 13 H 0.043 0.957 14 C -0.564 4.564 15 H 0.081 0.919 16 C -0.129 4.129 17 N -0.502 5.502 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.272 6.272 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.650 -1.596 -11.668 11.795 hybrid contribution 0.122 0.575 0.575 0.822 sum -0.528 -1.021 -11.093 11.153 Atomic orbital electron populations 1.21834 0.95901 1.01267 1.01325 1.21170 0.95120 0.96464 0.98832 1.21869 1.01325 0.96078 1.01148 1.21586 0.94792 1.00037 0.97800 1.21275 0.95986 0.99499 0.93788 0.90831 1.21898 1.00920 0.99625 0.97926 1.22493 0.92754 0.94079 0.89123 0.94005 1.23003 0.97098 0.99706 0.99186 1.23193 1.00402 0.98935 0.96020 1.20630 0.80295 0.97114 0.86611 0.95672 1.21002 1.06578 1.10758 1.18107 0.91945 1.25082 0.95190 0.96113 0.96512 1.70032 1.08644 1.35577 1.35909 0.86622 0.78206 0.83188 0.80126 1.20485 1.21132 1.19754 1.89217 1.45470 1.64257 1.28229 0.92601 0.93393 0.93070 0.91711 0.93680 0.92440 0.92432 0.92831 0.90389 0.92827 0.92870 0.93089 0.92508 0.91972 0.92528 0.91950 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.19 37.15 0.34 -1.50 16 2 C -0.10 -1.35 2.78 -90.62 -0.25 -1.60 16 3 C -0.15 -2.04 8.96 37.16 0.33 -1.71 16 4 C -0.10 -1.76 4.09 -26.73 -0.11 -1.87 16 5 C -0.09 -1.48 1.91 -90.62 -0.17 -1.65 16 6 H 0.07 1.32 6.34 -51.93 -0.33 0.99 16 7 C -0.15 -1.99 8.70 37.16 0.32 -1.67 16 8 C 0.07 1.53 2.97 -26.16 -0.08 1.45 16 9 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 10 C -0.15 -2.81 6.02 -25.20 -0.15 -2.96 16 11 C -0.15 -3.17 6.55 -24.73 -0.16 -3.34 16 12 C 0.21 5.53 3.08 -26.84 -0.08 5.45 16 13 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 14 C -0.53 -15.09 8.82 -34.44 -0.30 -15.40 16 15 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 16 C 0.08 2.20 5.44 -17.82 -0.10 2.11 16 17 N -0.87 -26.03 13.13 55.43 0.73 -25.30 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 O -0.35 -9.23 10.04 -35.23 -0.35 -9.58 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.81 6.46 -51.93 -0.34 0.48 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.58 7.62 -51.93 -0.40 1.19 16 32 H 0.05 0.65 6.46 -51.93 -0.34 0.31 16 33 H 0.05 0.69 6.56 -51.93 -0.34 0.35 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.02 6.51 -51.93 -0.34 0.68 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.34 8.04 -51.92 -0.42 0.93 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 302.53 15.07 4.56 4.56 Total: -1.00 -30.04 302.53 -7.52 -37.56 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.01 Total: -1.18 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -0.41 Total: -22.69 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.73 Total: -25.30 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.35 Total: -9.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.04 -7.52 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379510732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.758 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds