Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47111 * 2 1 4 4 C 1.53003 * 109.47097 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47120 * 175.00174 * 4 2 1 6 6 H 1.08991 * 109.47285 * 54.99705 * 5 4 2 7 7 C 1.52998 * 109.46765 * 294.99617 * 5 4 2 8 8 C 1.53000 * 109.47095 * 174.99978 * 5 4 2 9 9 H 1.09002 * 109.82264 * 305.69845 * 8 5 4 10 10 C 1.54381 * 109.82990 * 184.81300 * 8 5 4 11 11 C 1.55540 * 102.14829 * 219.05629 * 10 8 5 12 12 C 1.54945 * 100.94760 * 34.15203 * 11 10 8 13 13 H 1.09002 * 110.30911 * 82.45243 * 12 11 10 14 14 C 1.50709 * 110.30710 * 204.62259 * 12 11 10 15 15 H 1.08000 * 119.99956 * 357.16501 * 14 12 11 16 16 C 1.37874 * 119.99800 * 177.16864 * 14 12 11 17 17 N 1.31515 * 120.00209 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99742 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47042 * 90.00163 * 18 16 14 20 20 H 1.48504 * 109.47180 * 209.99819 * 18 16 14 21 21 H 1.48498 * 109.47134 * 330.00015 * 18 16 14 22 22 O 1.43242 * 109.83167 * 66.58856 * 8 5 4 23 23 H 1.09001 * 109.47283 * 300.00154 * 1 2 3 24 24 H 1.08992 * 109.47060 * 60.00100 * 1 2 3 25 25 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46841 * 239.99545 * 2 1 3 27 27 H 1.08995 * 109.47445 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47131 * 300.00043 * 3 2 1 29 29 H 1.09001 * 109.47172 * 59.99778 * 3 2 1 30 30 H 1.09000 * 109.47306 * 54.99664 * 4 2 1 31 31 H 1.09003 * 109.46920 * 295.00043 * 4 2 1 32 32 H 1.09000 * 109.47170 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47800 * 300.00067 * 7 5 4 34 34 H 1.09005 * 109.47099 * 60.00354 * 7 5 4 35 35 H 1.09000 * 110.84606 * 337.22954 * 10 8 5 36 36 H 1.08997 * 110.85312 * 100.84912 * 10 8 5 37 37 H 1.09002 * 111.13686 * 276.22391 * 11 10 8 38 38 H 1.08997 * 111.13893 * 152.07854 * 11 10 8 39 39 H 0.97000 * 120.00244 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 3.9954 0.1611 1.0527 7 6 3.9649 -1.7252 0.0128 8 6 4.0851 -1.4393 2.4920 9 1 3.7183 -0.8626 3.3411 10 6 5.6289 -1.4426 2.4889 11 6 5.9546 -2.8101 3.1546 12 6 4.7828 -3.6785 2.6315 13 1 5.0024 -4.0460 1.6291 14 6 4.5274 -4.8312 3.5681 15 1 5.1604 -4.9764 4.4310 16 6 3.4855 -5.7005 3.3234 17 7 2.7144 -5.5235 2.2728 18 14 3.1693 -7.1297 4.4840 19 1 2.2327 -6.7008 5.5535 20 1 2.5724 -8.2593 3.7270 21 1 4.4513 -7.5650 5.0939 22 8 3.6478 -2.7988 2.6025 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -1.7197 1.2953 31 1 1.7516 -0.1582 2.1370 32 1 5.0512 -1.8031 -0.0311 33 1 3.5344 -2.7173 0.1481 34 1 3.5942 -1.2918 -0.9161 35 1 6.0149 -1.4047 1.4702 36 1 6.0199 -0.6174 3.0839 37 1 5.9319 -2.7334 4.2417 38 1 6.9140 -3.1964 2.8103 39 1 1.9812 -6.1348 2.1008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379510733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = -80.820804 kcal Electronic energy + Delta-G solvation = -16720.675113 eV Core-core repulsion = 14241.027164 eV Total energy + Delta-G solvation = -2479.647949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.75334 -36.46429 -32.95771 -31.80894 -30.75169 -27.84737 -26.97622 -26.19293 -24.59721 -21.92964 -20.24335 -19.62363 -18.63374 -16.52631 -15.58622 -15.05673 -14.75791 -14.17799 -13.93842 -13.61409 -13.21592 -12.74544 -12.41036 -12.08130 -11.87672 -11.69434 -11.59047 -11.29907 -11.07088 -10.88528 -10.83386 -10.69856 -10.52878 -10.36426 -10.13721 -10.03183 -9.90047 -9.52638 -9.47936 -9.00173 -8.50134 -7.74126 -5.94744 -4.07035 3.34033 3.40355 3.42877 4.46790 5.00359 5.11213 5.21743 5.25588 5.50256 5.55364 5.60352 5.75118 5.77338 5.84853 5.91253 5.97675 6.02894 6.04338 6.12888 6.26757 6.27507 6.37308 6.40636 6.50152 6.58500 6.63566 6.70330 6.72992 6.82846 6.87081 6.94408 7.02496 7.20035 7.67849 7.94811 8.34575 8.73010 9.12468 9.63350 11.12421 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029851 B = 0.007805 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.777396 B = 3586.443368 C = 4232.691672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.095 4.095 6 H 0.060 0.940 7 C -0.144 4.144 8 C 0.077 3.923 9 H 0.052 0.948 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.213 3.787 13 H 0.025 0.975 14 C -0.535 4.535 15 H 0.060 0.940 16 C 0.079 3.921 17 N -0.861 5.861 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 O -0.348 6.348 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 10.653 -4.031 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.140 4.140 5 C -0.114 4.114 6 H 0.078 0.922 7 C -0.201 4.201 8 C 0.018 3.982 9 H 0.070 0.930 10 C -0.193 4.193 11 C -0.186 4.186 12 C 0.158 3.842 13 H 0.043 0.957 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.127 4.127 17 N -0.497 5.497 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 O -0.267 6.267 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.247 10.510 -4.132 11.296 hybrid contribution 0.000 -0.612 0.630 0.878 sum -0.248 9.898 -3.502 10.502 Atomic orbital electron populations 1.21826 0.95889 1.01718 1.00847 1.21197 0.95151 0.95881 0.99630 1.21878 1.01133 0.96448 1.00852 1.21568 0.95335 1.01140 0.95938 1.21476 0.95742 0.97914 0.96245 0.92154 1.21834 1.00359 1.01587 0.96322 1.22532 0.92196 0.88674 0.94801 0.92977 1.23232 0.97032 0.98380 1.00644 1.23368 1.00418 0.94666 1.00181 1.20463 0.80741 0.87557 0.95443 0.95712 1.21131 1.15507 1.09198 1.11457 0.92149 1.25042 0.95592 0.97173 0.94877 1.70034 1.17065 1.36425 1.26216 0.86677 0.78490 0.82095 0.81160 1.20578 1.21189 1.19860 1.88813 1.32450 1.11421 1.94038 0.93086 0.93454 0.92567 0.91150 0.92553 0.93547 0.93096 0.90531 0.92969 0.93649 0.90594 0.93981 0.91450 0.92357 0.91866 0.92332 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.19 37.16 0.34 -1.52 16 2 C -0.10 -1.39 2.78 -90.62 -0.25 -1.64 16 3 C -0.15 -1.75 8.95 37.16 0.33 -1.42 16 4 C -0.10 -1.72 4.02 -26.73 -0.11 -1.83 16 5 C -0.10 -1.64 2.07 -90.62 -0.19 -1.83 16 6 H 0.06 0.92 6.34 -51.93 -0.33 0.59 16 7 C -0.14 -2.57 8.49 37.16 0.32 -2.25 16 8 C 0.08 1.56 3.20 -26.01 -0.08 1.47 16 9 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 10 C -0.16 -2.84 6.38 -24.66 -0.16 -2.99 16 11 C -0.15 -3.15 6.54 -24.35 -0.16 -3.31 16 12 C 0.21 5.53 3.21 -26.85 -0.09 5.44 16 13 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.54 -15.23 8.81 -34.44 -0.30 -15.53 16 15 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 16 C 0.08 2.25 5.42 -17.82 -0.10 2.16 16 17 N -0.86 -25.57 12.93 55.43 0.72 -24.86 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 O -0.35 -8.92 9.02 -35.23 -0.32 -9.24 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 27 H 0.06 0.67 6.46 -51.93 -0.34 0.34 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.54 8.01 -51.93 -0.42 1.12 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.78 6.36 -51.93 -0.33 0.45 16 33 H 0.08 1.64 7.54 -51.93 -0.39 1.25 16 34 H 0.04 0.65 6.46 -51.93 -0.34 0.31 16 35 H 0.07 1.16 6.08 -51.93 -0.32 0.84 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 301.02 15.07 4.54 4.54 Total: -1.00 -29.49 301.02 -7.50 -36.99 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.97 Total: -0.78 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.44 Total: -23.25 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.72 Total: -24.86 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.32 Total: -9.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.49 -7.50 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379510733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.829 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds