Wall clock time and date at job start Mon Mar 30 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46710 * 2 1 4 4 C 1.52999 * 109.47620 * 119.99818 * 2 1 3 5 5 C 1.52995 * 109.47401 * 174.09114 * 4 2 1 6 6 H 1.09000 * 109.46878 * 54.96534 * 5 4 2 7 7 C 1.53000 * 109.47426 * 294.96647 * 5 4 2 8 8 C 1.52995 * 109.47309 * 174.96083 * 5 4 2 9 9 H 1.09005 * 109.87259 * 306.00786 * 8 5 4 10 10 C 1.54099 * 109.88152 * 185.00363 * 8 5 4 11 11 C 1.54810 * 104.18919 * 238.39619 * 10 8 5 12 12 C 1.54996 * 102.09051 * 339.11910 * 11 10 8 13 13 H 1.09003 * 110.75390 * 278.45134 * 12 11 10 14 14 C 1.50702 * 110.61571 * 155.52395 * 12 11 10 15 15 H 1.07998 * 120.00441 * 4.47131 * 14 12 11 16 16 C 1.37876 * 119.99850 * 184.47446 * 14 12 11 17 17 N 1.31521 * 120.00180 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 120.00257 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47084 * 89.99867 * 18 16 14 20 20 H 1.48503 * 109.47399 * 210.00348 * 18 16 14 21 21 H 1.48502 * 109.46628 * 330.00048 * 18 16 14 22 22 O 1.43741 * 110.00465 * 67.09486 * 8 5 4 23 23 H 1.08995 * 109.46985 * 55.17794 * 1 2 3 24 24 H 1.09001 * 109.46401 * 175.17684 * 1 2 3 25 25 H 1.09003 * 109.46922 * 295.16857 * 1 2 3 26 26 H 1.08999 * 109.47429 * 240.00781 * 2 1 3 27 27 H 1.09002 * 109.46846 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47282 * 299.99950 * 3 2 1 29 29 H 1.08997 * 109.46801 * 60.00692 * 3 2 1 30 30 H 1.09001 * 109.46494 * 54.09334 * 4 2 1 31 31 H 1.08994 * 109.47513 * 294.09832 * 4 2 1 32 32 H 1.08992 * 109.47501 * 65.84838 * 7 5 4 33 33 H 1.09002 * 109.46971 * 185.84943 * 7 5 4 34 34 H 1.09004 * 109.46615 * 305.84564 * 7 5 4 35 35 H 1.08998 * 110.48630 * 357.07251 * 10 8 5 36 36 H 1.09003 * 110.49163 * 119.72184 * 10 8 5 37 37 H 1.09005 * 110.90828 * 97.31678 * 11 10 8 38 38 H 1.09004 * 110.91053 * 220.91877 * 11 10 8 39 39 H 0.96993 * 120.00206 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5629 -0.8510 1.1771 6 1 4.0051 0.1347 1.0327 7 6 3.9426 -1.7571 0.0042 8 6 4.0852 -1.4583 2.4806 9 1 3.7283 -0.8756 3.3300 10 6 5.6261 -1.4778 2.4692 11 6 5.9880 -2.9724 2.6475 12 6 4.6919 -3.5478 3.2732 13 1 4.6641 -3.3586 4.3463 14 6 4.5777 -5.0242 2.9933 15 1 5.3794 -5.5416 2.4873 16 6 3.4497 -5.7145 3.3832 17 7 2.4736 -5.0847 3.9998 18 14 3.3077 -7.5444 3.0356 19 1 3.8685 -8.3102 4.1777 20 1 1.8786 -7.9042 2.8525 21 1 4.0632 -7.8736 1.8003 22 8 3.6415 -2.8201 2.6012 23 1 -0.3633 0.5868 -0.8436 24 1 -0.3632 -1.0241 -0.0864 25 1 -0.3633 0.4371 0.9301 26 1 1.8934 -0.5137 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.5930 -1.7138 1.3036 31 1 1.7657 -0.1500 2.1360 32 1 3.6628 -1.2753 -0.9325 33 1 5.0181 -1.9337 0.0149 34 1 3.4174 -2.7080 0.0949 35 1 6.0052 -1.1043 1.5180 36 1 6.0213 -0.8883 3.2965 37 1 6.1960 -3.4398 1.6849 38 1 6.8329 -3.0898 3.3260 39 1 1.6799 -5.5702 4.2738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379510734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:22 Heat of formation + Delta-G solvation = -81.924349 kcal Electronic energy + Delta-G solvation = -16688.281156 eV Core-core repulsion = 14208.585354 eV Total energy + Delta-G solvation = -2479.695802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.71076 -36.50801 -33.01581 -31.87441 -30.72396 -27.79625 -27.00211 -26.20438 -24.63525 -21.95506 -20.28857 -19.51251 -18.78681 -16.55722 -15.40614 -15.03512 -14.71114 -14.21639 -14.12053 -13.61757 -13.08107 -12.86845 -12.33409 -12.21031 -12.13047 -11.69103 -11.65998 -11.26863 -11.05532 -10.92239 -10.78436 -10.73989 -10.54165 -10.32038 -10.10596 -10.06688 -9.94648 -9.59606 -9.35982 -8.98756 -8.54032 -7.89927 -5.96852 -4.08873 3.32681 3.39440 3.42788 4.45344 5.00876 5.07167 5.18199 5.23178 5.50988 5.53197 5.58502 5.75187 5.79346 5.83071 5.89030 5.94266 6.00918 6.01234 6.09459 6.24273 6.30809 6.36087 6.38655 6.47523 6.53259 6.62331 6.68068 6.74510 6.82161 6.87397 6.93626 6.99325 7.14753 7.58673 7.93265 8.30533 8.66886 9.04931 9.61119 11.10922 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028147 B = 0.007876 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.552221 B = 3554.368358 C = 4151.732235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.083 4.083 6 H 0.063 0.937 7 C -0.138 4.138 8 C 0.072 3.928 9 H 0.041 0.959 10 C -0.153 4.153 11 C -0.146 4.146 12 C 0.210 3.790 13 H 0.022 0.978 14 C -0.529 4.529 15 H 0.062 0.938 16 C 0.077 3.923 17 N -0.863 5.863 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.343 6.343 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 10.103 -6.263 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.102 4.102 6 H 0.082 0.918 7 C -0.195 4.195 8 C 0.013 3.987 9 H 0.059 0.941 10 C -0.191 4.191 11 C -0.184 4.184 12 C 0.154 3.846 13 H 0.039 0.961 14 C -0.566 4.566 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.499 5.499 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.262 6.262 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.041 10.001 -6.251 11.794 hybrid contribution 0.074 -0.807 -0.022 0.811 sum 0.033 9.194 -6.273 11.130 Atomic orbital electron populations 1.21829 0.95841 1.01585 1.01050 1.21196 0.95202 0.95946 0.99508 1.21880 1.01122 0.96405 1.00933 1.21600 0.95322 1.01086 0.96114 1.21273 0.95629 0.97800 0.95449 0.91831 1.21739 1.01221 1.00562 0.95984 1.22530 0.92113 0.89012 0.95071 0.94076 1.22998 0.97207 0.98271 1.00598 1.23187 1.00498 0.93592 1.01098 1.20607 0.80811 0.91471 0.91696 0.96064 1.20982 1.03900 0.91498 1.40242 0.91951 1.25061 0.95608 0.98080 0.94066 1.70042 1.06692 1.35644 1.37548 0.86651 0.77318 0.85573 0.78742 1.20595 1.21133 1.19790 1.89235 1.42385 1.15424 1.79191 0.93403 0.92678 0.92950 0.91186 0.92562 0.93494 0.93024 0.90736 0.92744 0.94137 0.93248 0.91283 0.91996 0.92615 0.91876 0.92673 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.10 -1.35 2.79 -90.62 -0.25 -1.61 16 3 C -0.15 -1.72 8.97 37.16 0.33 -1.38 16 4 C -0.10 -1.72 4.01 -26.73 -0.11 -1.83 16 5 C -0.08 -1.41 1.96 -90.62 -0.18 -1.59 16 6 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 7 C -0.14 -2.37 8.36 37.16 0.31 -2.06 16 8 C 0.07 1.47 3.09 -26.16 -0.08 1.38 16 9 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 10 C -0.15 -2.82 6.10 -25.20 -0.15 -2.97 16 11 C -0.15 -3.11 6.55 -24.72 -0.16 -3.27 16 12 C 0.21 5.49 3.16 -26.83 -0.08 5.41 16 13 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 14 C -0.53 -15.01 8.83 -34.44 -0.30 -15.32 16 15 H 0.06 1.72 7.78 -52.49 -0.41 1.31 16 16 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 17 N -0.86 -25.86 12.95 55.43 0.72 -25.15 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 O -0.34 -8.84 9.38 -35.23 -0.33 -9.17 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.96 6.44 -51.93 -0.33 0.63 16 27 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.59 6.73 -51.93 -0.35 0.24 16 33 H 0.05 0.84 6.60 -51.93 -0.34 0.50 16 34 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 35 H 0.06 1.02 6.62 -51.93 -0.34 0.68 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -29.69 302.22 -7.56 -37.25 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.05 Total: -1.47 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.43 Total: -22.60 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.72 Total: -25.15 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.33 Total: -9.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.69 -7.56 -37.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379510734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.670 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds