Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99914 * 2 1 4 4 H 1.48506 * 109.47120 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.47330 * 29.99542 * 3 2 1 6 6 H 1.48500 * 109.47173 * 149.99811 * 3 2 1 7 7 C 1.37877 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99830 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00227 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47252 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47252 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47392 * 180.02562 * 12 11 10 14 14 C 1.48066 * 111.00183 * 61.64031 * 13 12 11 15 15 C 1.53695 * 112.47281 * 192.20349 * 14 13 12 16 16 C 1.50808 * 112.09689 * 318.54996 * 15 14 13 17 17 N 1.47912 * 108.49872 * 92.55270 * 16 15 14 18 18 C 1.40018 * 114.06308 * 280.07402 * 17 16 15 19 19 C 1.44573 * 110.99941 * 293.95337 * 13 12 11 20 20 H 0.96998 * 119.99830 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47305 * 59.99878 * 9 7 2 22 22 H 1.09004 * 109.46864 * 300.00563 * 9 7 2 23 23 H 1.09000 * 109.47084 * 59.99574 * 10 9 7 24 24 H 1.09000 * 109.46565 * 299.99714 * 10 9 7 25 25 H 1.09000 * 109.47453 * 59.99764 * 11 10 9 26 26 H 1.08998 * 109.47422 * 299.99770 * 11 10 9 27 27 H 1.08991 * 109.47143 * 59.99667 * 12 11 10 28 28 H 1.09009 * 109.46782 * 299.99706 * 12 11 10 29 29 H 1.09004 * 108.87744 * 312.96899 * 14 13 12 30 30 H 1.08993 * 108.88100 * 71.42635 * 14 13 12 31 31 H 1.08993 * 108.95972 * 79.21953 * 15 14 13 32 32 H 1.09002 * 108.95645 * 197.96609 * 15 14 13 33 33 H 1.08999 * 109.63373 * 332.84979 * 16 15 14 34 34 H 1.09000 * 109.63047 * 212.25333 * 16 15 14 35 35 H 1.00901 * 110.99854 * 153.79205 * 17 16 15 36 36 H 1.08997 * 108.95402 * 182.47699 * 18 17 16 37 37 H 1.08996 * 108.96219 * 301.22708 * 18 17 16 38 38 H 1.08996 * 109.57717 * 100.53757 * 19 13 12 39 39 H 1.09007 * 109.67906 * 340.21636 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 6 6.0615 -4.0790 0.0028 13 7 7.5305 -4.0791 0.0046 14 6 8.0597 -3.4226 1.2217 15 6 9.5663 -3.1342 1.1258 16 6 10.3241 -4.2779 0.4996 17 7 10.4239 -4.0338 -0.9558 18 6 9.2675 -4.3675 -1.6713 19 6 8.0501 -3.5310 -1.2282 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8752 -0.6804 -0.8888 23 1 3.6585 -3.1502 -0.8892 24 1 3.6579 -3.1505 0.8908 25 1 5.9141 -2.1230 0.8927 26 1 5.9156 -2.1224 -0.8873 27 1 5.6989 -4.5929 -0.8874 28 1 5.6975 -4.5928 0.8926 29 1 7.5296 -2.4824 1.3740 30 1 7.8784 -4.0705 2.0791 31 1 9.7177 -2.2379 0.5244 32 1 9.9576 -2.9583 2.1278 33 1 9.7913 -5.2118 0.6786 34 1 11.3236 -4.3346 0.9308 35 1 11.2344 -4.4920 -1.3445 36 1 9.4466 -4.1974 -2.7329 37 1 9.0462 -5.4231 -1.5143 38 1 8.3562 -2.4972 -1.0680 39 1 7.2810 -3.5688 -1.9997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385187308.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -8.301727 kcal Electronic energy + Delta-G solvation = -15974.118045 eV Core-core repulsion = 13529.907510 eV Total energy + Delta-G solvation = -2444.210535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41201 -36.28731 -34.06653 -32.61876 -31.99437 -29.25139 -26.88442 -25.93840 -24.05768 -21.95656 -20.86433 -20.12264 -19.32726 -17.11258 -16.65485 -15.99175 -15.12714 -14.81602 -14.50792 -14.46700 -14.13399 -13.35089 -12.98454 -12.74056 -12.47203 -12.24509 -11.83701 -11.81467 -11.27240 -11.13375 -11.02417 -10.92125 -10.77076 -10.68699 -10.41388 -9.90484 -9.70627 -9.59993 -9.15592 -8.52035 -8.48313 -8.00888 -6.02697 -4.00251 3.31387 3.38566 3.42917 3.95115 4.13469 4.46772 4.77623 4.98694 5.01760 5.11088 5.25348 5.31307 5.37101 5.44701 5.49245 5.55357 5.64609 5.76032 5.85238 5.86955 5.90678 6.01894 6.06627 6.17132 6.22569 6.41773 6.61184 6.73428 6.94367 7.02990 7.20780 7.32763 7.34277 7.37134 7.47135 7.82434 8.56645 9.02647 9.60397 11.10966 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.047399 B = 0.004795 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.589458 B = 5838.508431 C = 5986.204818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.098 4.098 11 C -0.157 4.157 12 C 0.059 3.941 13 N -0.553 5.553 14 C 0.053 3.947 15 C -0.122 4.122 16 C 0.072 3.928 17 N -0.703 5.703 18 C 0.079 3.921 19 C 0.060 3.940 20 H 0.262 0.738 21 H 0.013 0.987 22 H 0.008 0.992 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.341 0.659 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.050 0.950 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.040 -8.433 -0.158 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.196 4.196 12 C -0.069 4.069 13 N -0.276 5.276 14 C -0.074 4.074 15 C -0.160 4.160 16 C -0.057 4.057 17 N -0.335 5.335 18 C -0.052 4.052 19 C -0.069 4.069 20 H 0.072 0.928 21 H 0.031 0.969 22 H 0.027 0.973 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.836 -8.161 -0.072 22.377 hybrid contribution 0.048 0.896 -0.040 0.898 sum 20.885 -7.265 -0.113 22.112 Atomic orbital electron populations 1.69923 1.06293 1.26824 1.51408 1.25046 0.94729 0.99177 0.94629 0.86766 0.80322 0.83638 0.78475 1.20325 1.21381 1.19132 1.21192 0.89670 0.94418 1.50501 0.91087 1.19574 0.97009 0.92607 0.95958 1.21372 0.91624 0.99677 1.00992 1.22336 0.98724 0.97125 1.01418 1.22292 0.85467 0.96524 1.02575 1.61012 1.07737 1.56968 1.01924 1.22460 0.94541 0.97943 0.92443 1.21477 0.94222 0.99561 1.00730 1.21589 0.99150 0.97773 0.87163 1.57670 1.05965 1.66214 1.03660 1.20827 0.90278 0.97476 0.96654 1.21924 0.96083 0.97156 0.91725 0.92789 0.96904 0.97328 0.92873 0.92850 0.92330 0.92651 0.90816 0.90973 0.93751 0.91372 0.91047 0.91389 0.93365 0.91691 0.83997 0.91512 0.95743 0.93178 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.46 16 10 C -0.10 -1.97 5.15 -26.74 -0.14 -2.11 16 11 C -0.16 -2.55 4.72 -26.74 -0.13 -2.68 16 12 C 0.06 0.81 5.13 -3.82 -0.02 0.79 16 13 N -0.55 -7.01 4.12 -234.31 -0.96 -7.97 16 14 C 0.05 0.64 5.35 -2.82 -0.02 0.62 16 15 C -0.12 -1.25 5.36 -27.47 -0.15 -1.40 16 16 C 0.07 0.68 6.23 -4.37 -0.03 0.65 16 17 N -0.70 -6.76 6.21 -118.32 -0.73 -7.50 16 18 C 0.08 0.82 6.11 -6.75 -0.04 0.78 16 19 C 0.06 0.73 4.41 -4.44 -0.02 0.71 16 20 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 21 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 22 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.97 6.18 -51.93 -0.32 0.65 16 26 H 0.05 0.91 7.26 -51.93 -0.38 0.53 16 27 H 0.07 1.00 7.91 -51.93 -0.41 0.59 16 28 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.04 0.58 5.77 -51.93 -0.30 0.28 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.83 7.23 -51.93 -0.38 0.45 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.34 2.59 8.85 -39.29 -0.35 2.24 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.27 8.06 -51.93 -0.42 -0.15 16 38 H 0.05 0.66 6.93 -51.93 -0.36 0.30 16 39 H 0.07 0.89 7.30 -51.92 -0.38 0.51 16 LS Contribution 295.28 15.07 4.45 4.45 Total: -1.00 -31.00 295.28 -9.22 -40.22 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.99 Total: -2.30 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.08 Total: -16.82 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.93 Total: -43.17 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.00 -9.22 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187308.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.914 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds