Wall clock time and date at job start Mon Mar 30 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48495 * 109.47299 * 270.00120 * 3 2 1 5 5 H 1.48503 * 109.46839 * 30.00412 * 3 2 1 6 6 H 1.48503 * 109.46986 * 150.00064 * 3 2 1 7 7 C 1.37877 * 120.00625 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00487 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99486 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46740 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47087 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47217 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.47159 * 180.02562 * 12 11 10 14 14 C 1.46842 * 110.99676 * 293.95275 * 13 12 11 15 15 C 1.53036 * 109.52190 * 185.84074 * 14 13 12 16 16 C 1.53123 * 109.27788 * 300.81892 * 15 14 13 17 17 C 1.53123 * 109.16001 * 57.65365 * 16 15 14 18 18 H 1.08997 * 109.49749 * 62.28489 * 17 16 15 19 19 N 1.46902 * 109.50377 * 182.40449 * 17 16 15 20 20 C 1.46848 * 110.99958 * 58.16337 * 13 12 11 21 21 H 0.96998 * 120.00645 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47105 * 60.00434 * 9 7 2 23 23 H 1.08996 * 109.46975 * 299.99485 * 9 7 2 24 24 H 1.08999 * 109.47310 * 60.00078 * 10 9 7 25 25 H 1.09000 * 109.47664 * 299.99901 * 10 9 7 26 26 H 1.08999 * 109.46952 * 59.99895 * 11 10 9 27 27 H 1.09000 * 109.46817 * 300.00456 * 11 10 9 28 28 H 1.08999 * 109.47425 * 59.99964 * 12 11 10 29 29 H 1.09004 * 109.47063 * 299.99521 * 12 11 10 30 30 H 1.09002 * 109.46766 * 65.82407 * 14 13 12 31 31 H 1.09000 * 109.45508 * 305.84586 * 14 13 12 32 32 H 1.09000 * 109.50632 * 60.76184 * 15 14 13 33 33 H 1.09006 * 109.50216 * 180.87978 * 15 14 13 34 34 H 1.09000 * 109.52561 * 177.56017 * 16 15 14 35 35 H 1.09007 * 109.52268 * 297.75177 * 16 15 14 36 36 H 1.00900 * 111.00032 * 299.81062 * 19 17 16 37 37 H 1.00902 * 110.99646 * 63.75544 * 19 17 16 38 38 H 1.09003 * 109.46014 * 294.17985 * 20 13 12 39 39 H 1.08995 * 109.46374 * 54.14015 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4806 -4.9871 -0.0012 12 6 2.4748 -6.1499 -0.0018 13 7 1.7404 -7.4222 -0.0018 14 6 0.9958 -7.5999 1.2513 15 6 0.3636 -8.9933 1.2773 16 6 -0.5760 -9.1446 0.0776 17 6 0.2139 -8.9070 -1.2124 18 1 0.9948 -9.6617 -1.3051 19 7 -0.6923 -8.9935 -2.3654 20 6 0.8505 -7.5161 -1.1662 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8897 24 1 2.8728 -3.6046 0.8877 25 1 2.8715 -3.6039 -0.8922 26 1 0.8529 -5.0447 -0.8905 27 1 0.8549 -5.0449 0.8895 28 1 3.1022 -6.0921 0.8877 29 1 3.1008 -6.0922 -0.8923 30 1 0.2129 -6.8445 1.3189 31 1 1.6764 -7.4942 2.0961 32 1 1.1468 -9.7494 1.2237 33 1 -0.2020 -9.1192 2.2006 34 1 -0.9953 -10.1507 0.0679 35 1 -1.3815 -8.4139 0.1514 36 1 -1.1253 -9.9034 -2.4174 37 1 -1.3880 -8.2633 -2.3340 38 1 0.0683 -6.7611 -1.0873 39 1 1.4254 -7.3493 -2.0771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385314571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:35 Heat of formation + Delta-G solvation = -28.327378 kcal Electronic energy + Delta-G solvation = -15858.341540 eV Core-core repulsion = 13413.262628 eV Total energy + Delta-G solvation = -2445.078912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.42663 -35.82727 -33.96213 -32.66677 -31.54322 -28.56409 -27.91165 -25.34358 -23.37448 -22.42099 -21.29492 -20.30553 -19.31573 -16.27979 -16.21457 -15.81226 -14.99700 -14.69279 -14.45659 -14.32212 -13.89698 -13.59538 -13.30177 -12.70851 -12.51079 -11.90635 -11.82644 -11.66858 -11.38875 -10.98896 -10.97052 -10.90644 -10.58510 -10.52050 -10.39951 -10.32410 -9.61726 -9.39082 -9.06405 -8.83326 -8.33081 -8.05563 -5.98003 -4.00360 3.32941 3.38865 3.42538 3.89395 4.47331 4.49970 4.67981 4.76959 4.95582 5.11315 5.36023 5.37122 5.39487 5.45372 5.46010 5.58040 5.71171 5.76157 5.87359 5.90270 5.97489 6.01303 6.14902 6.20582 6.31708 6.51885 6.76167 6.93126 6.94902 7.12359 7.20198 7.22086 7.29657 7.70106 7.85368 8.02526 8.45796 9.07162 9.63703 11.13372 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046424 B = 0.004490 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.992526 B = 6234.963903 C = 6395.200991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.154 4.154 12 C 0.055 3.945 13 N -0.537 5.537 14 C 0.049 3.951 15 C -0.112 4.112 16 C -0.155 4.155 17 C 0.094 3.906 18 H 0.086 0.914 19 N -0.845 5.845 20 C 0.060 3.940 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.340 0.660 37 H 0.340 0.660 38 H 0.039 0.961 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -18.582 0.383 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.193 4.193 12 C -0.073 4.073 13 N -0.260 5.260 14 C -0.079 4.079 15 C -0.151 4.151 16 C -0.195 4.195 17 C -0.018 4.018 18 H 0.104 0.896 19 N -0.373 5.373 20 C -0.069 4.069 21 H 0.069 0.931 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.057 0.943 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.264 -18.731 -0.106 18.733 hybrid contribution -1.038 1.542 0.832 2.037 sum -0.774 -17.189 0.726 17.222 Atomic orbital electron populations 1.69966 1.06088 1.26529 1.51097 1.25035 0.94836 0.99259 0.95381 0.86605 0.79862 0.83499 0.78110 1.20650 1.21241 1.19864 1.21294 0.93046 0.91186 1.50284 0.92712 1.19094 0.94043 0.91546 0.96927 1.21546 0.98962 0.93766 1.00187 1.22278 0.99129 0.96479 1.01421 1.22290 0.96204 0.86125 1.02632 1.62149 1.27775 1.34222 1.01903 1.22121 0.96944 0.96228 0.92626 1.21511 0.98543 0.97547 0.97458 1.22468 0.98846 1.01236 0.96952 1.21466 0.94844 0.98318 0.87187 0.89563 1.58833 1.25714 1.08578 1.44221 1.22030 0.95591 0.95121 0.94143 0.93059 0.96857 0.96902 0.93484 0.93393 0.92384 0.92659 0.90858 0.90752 0.94318 0.90740 0.91204 0.91752 0.92195 0.92271 0.84709 0.84751 0.94284 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.15 -2.67 4.52 -26.73 -0.12 -2.79 16 12 C 0.06 0.80 5.36 -3.82 -0.02 0.78 16 13 N -0.54 -7.07 4.86 -234.67 -1.14 -8.21 16 14 C 0.05 0.59 5.05 -3.84 -0.02 0.57 16 15 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 16 C -0.16 -1.49 5.57 -26.60 -0.15 -1.64 16 17 C 0.09 0.99 3.41 -67.63 -0.23 0.76 16 18 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 19 N -0.85 -8.09 9.26 -4.60 -0.04 -8.14 16 20 C 0.06 0.76 4.38 -3.84 -0.02 0.75 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.04 6.50 -51.93 -0.34 0.70 16 27 H 0.05 0.98 6.68 -51.93 -0.35 0.63 16 28 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.52 6.76 -51.93 -0.35 0.17 16 31 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.34 2.60 9.04 -39.29 -0.36 2.24 16 37 H 0.34 3.13 8.98 -39.29 -0.35 2.78 16 38 H 0.04 0.55 6.61 -51.93 -0.34 0.20 16 39 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -30.43 303.62 -9.41 -39.84 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.11 Total: 0.41 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.41 Total: -18.68 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.45 Total: -43.13 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.43 -9.41 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385314571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.517 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds