Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48495 * 109.47241 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47040 * 29.99906 * 3 2 1 6 6 H 1.48499 * 109.47180 * 149.99950 * 3 2 1 7 7 C 1.37881 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00499 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99657 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46998 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47350 * 180.02562 * 10 9 7 12 12 C 1.44399 * 111.05085 * 62.66034 * 11 10 9 13 13 C 1.53993 * 108.27777 * 221.44382 * 12 11 10 14 14 C 1.45873 * 112.57335 * 278.47614 * 13 12 11 15 15 C 1.54516 * 111.68060 * 61.55004 * 14 13 12 16 16 C 1.50539 * 108.85706 * 282.73836 * 15 14 13 17 17 H 1.09005 * 108.78624 * 330.86811 * 16 15 14 18 18 C 1.52998 * 108.79105 * 212.65541 * 16 15 14 19 19 N 1.46894 * 109.47481 * 64.99792 * 18 16 15 20 20 C 1.47950 * 111.00345 * 190.00264 * 11 10 9 21 21 H 0.97000 * 119.99744 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46750 * 60.00074 * 9 7 2 23 23 H 1.08990 * 109.47050 * 300.00269 * 9 7 2 24 24 H 1.09001 * 109.47010 * 59.99972 * 10 9 7 25 25 H 1.09006 * 109.47181 * 299.99966 * 10 9 7 26 26 H 1.08998 * 109.79348 * 101.70462 * 12 11 10 27 27 H 1.09003 * 109.63802 * 341.08930 * 12 11 10 28 28 H 1.09002 * 108.84502 * 157.71082 * 13 12 11 29 29 H 1.08997 * 108.84583 * 39.24562 * 13 12 11 30 30 H 1.09002 * 109.03927 * 182.11369 * 14 13 12 31 31 H 1.08995 * 109.04246 * 301.05830 * 14 13 12 32 32 H 1.09004 * 109.57719 * 42.54975 * 15 14 13 33 33 H 1.09006 * 109.57180 * 162.92900 * 15 14 13 34 34 H 1.09005 * 109.46889 * 185.00129 * 18 16 15 35 35 H 1.09001 * 109.46725 * 304.99312 * 18 16 15 36 36 H 1.00907 * 110.99956 * 179.97438 * 19 18 16 37 37 H 1.00897 * 111.00332 * 303.95139 * 19 18 16 38 38 H 1.09004 * 108.70788 * 71.18156 * 20 11 10 39 39 H 1.09000 * 108.60739 * 313.09981 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6367 -0.0009 12 6 6.0092 -2.0177 1.1961 13 6 7.2057 -1.1319 0.8022 14 6 8.4395 -1.8943 0.6463 15 6 8.3204 -2.9496 -0.4760 16 6 7.5289 -4.1215 0.0400 17 1 7.6803 -4.2007 1.1166 18 6 8.0498 -5.3983 -0.6228 19 7 9.4358 -5.6391 -0.2000 20 6 6.0207 -3.9969 -0.2407 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8910 24 1 3.6578 -3.1506 -0.8907 25 1 3.6585 -3.1502 0.8893 26 1 6.3359 -2.7859 1.8970 27 1 5.2344 -1.4048 1.6568 28 1 7.3537 -0.3765 1.5741 29 1 6.9790 -0.6324 -0.1396 30 1 9.2526 -1.2095 0.4056 31 1 8.6665 -2.3994 1.5851 32 1 7.8096 -2.5136 -1.3346 33 1 9.3155 -3.2827 -0.7712 34 1 7.4272 -6.2422 -0.3252 35 1 8.0147 -5.2854 -1.7064 36 1 9.8027 -6.4779 -0.6244 37 1 10.0205 -4.8433 -0.4070 38 1 5.8352 -4.2662 -1.2805 39 1 5.4864 -4.6968 0.4018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389344043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -11.233595 kcal Electronic energy + Delta-G solvation = -16398.196170 eV Core-core repulsion = 13953.858500 eV Total energy + Delta-G solvation = -2444.337670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.30182 -35.98509 -34.22991 -32.77075 -31.33627 -29.88523 -26.80922 -25.07142 -24.54329 -22.33371 -20.40605 -19.96825 -19.14523 -16.93240 -16.37087 -15.63984 -15.21640 -14.81694 -14.32239 -13.91692 -13.66317 -13.42674 -13.20230 -12.78768 -12.66075 -12.52764 -12.06424 -11.43712 -11.33908 -10.99008 -10.87085 -10.50887 -10.41859 -10.31725 -10.14058 -10.03576 -9.69749 -9.64084 -9.15468 -8.87002 -8.50604 -7.64796 -6.02549 -4.00374 3.34165 3.40971 3.46074 4.17355 4.48050 4.51459 4.82527 4.90871 5.00115 5.20612 5.31873 5.32921 5.42408 5.51098 5.69215 5.72303 5.79944 5.89545 5.97045 6.06383 6.13034 6.20844 6.30489 6.36778 6.38841 6.49273 6.52992 6.69027 6.81346 6.94664 7.19931 7.22292 7.43098 7.69809 7.78929 7.91425 8.55470 9.01856 9.60171 11.10906 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044665 B = 0.006173 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.745067 B = 4534.799992 C = 4990.541426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.008 4.008 10 C 0.075 3.925 11 N -0.550 5.550 12 C 0.058 3.942 13 C -0.116 4.116 14 C -0.109 4.109 15 C -0.105 4.105 16 C -0.086 4.086 17 H 0.073 0.927 18 C 0.065 3.935 19 N -0.852 5.852 20 C 0.069 3.931 21 H 0.263 0.737 22 H 0.017 0.983 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.339 0.661 37 H 0.340 0.660 38 H 0.066 0.934 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.454 -7.144 -0.383 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.045 4.045 10 C -0.052 4.052 11 N -0.274 5.274 12 C -0.071 4.071 13 C -0.155 4.155 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.105 4.105 17 H 0.091 0.909 18 C -0.066 4.066 19 N -0.383 5.383 20 C -0.060 4.060 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 18.138 -6.817 -0.013 19.376 hybrid contribution 0.236 0.461 -0.384 0.645 sum 18.374 -6.355 -0.397 19.446 Atomic orbital electron populations 1.69919 1.06326 1.26874 1.51262 1.24995 0.94699 0.99158 0.94511 0.86752 0.80343 0.83485 0.78576 1.20268 1.21535 1.18904 1.21097 0.89482 0.94470 1.50870 0.91174 1.19621 0.96339 0.91811 0.96758 1.22103 0.83348 1.00151 0.99577 1.60848 1.09222 1.19341 1.38029 1.21870 0.97187 0.97143 0.90860 1.20497 0.94598 0.98178 1.02182 1.20518 0.97909 0.97857 0.98364 1.21362 0.98329 0.95417 0.99182 1.21004 0.94357 0.94122 1.00989 0.90874 1.21821 0.89848 0.98096 0.96802 1.58761 1.03720 1.08417 1.67440 1.22306 0.93140 0.89760 1.00745 0.92763 0.96455 0.96201 0.91717 0.95759 0.94804 0.90341 0.92831 0.91125 0.92846 0.92788 0.90851 0.93048 0.91173 0.95357 0.84948 0.84573 0.91524 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.19 3.95 -27.88 -0.11 -0.30 16 10 C 0.07 1.54 4.78 -3.83 -0.02 1.52 16 11 N -0.55 -9.52 4.03 -234.55 -0.95 -10.46 16 12 C 0.06 0.95 5.11 -4.64 -0.02 0.92 16 13 C -0.12 -1.66 5.38 -29.59 -0.16 -1.82 16 14 C -0.11 -1.31 5.34 -29.31 -0.16 -1.46 16 15 C -0.11 -1.22 5.03 -27.17 -0.14 -1.36 16 16 C -0.09 -1.03 1.86 -91.38 -0.17 -1.20 16 17 H 0.07 0.96 6.65 -51.93 -0.35 0.62 16 18 C 0.07 0.67 6.04 -3.83 -0.02 0.65 16 19 N -0.85 -7.71 9.62 -10.37 -0.10 -7.81 16 20 C 0.07 0.99 4.76 -2.77 -0.01 0.98 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.02 0.42 5.26 -51.93 -0.27 0.15 16 23 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 24 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.52 6.78 -51.93 -0.35 0.17 16 27 H 0.08 1.44 5.64 -51.93 -0.29 1.15 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.64 7.58 -51.93 -0.39 0.24 16 32 H 0.07 0.97 7.78 -51.93 -0.40 0.57 16 33 H 0.05 0.50 5.87 -51.93 -0.30 0.20 16 34 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.34 2.43 9.08 -39.29 -0.36 2.07 16 37 H 0.34 2.81 6.95 -39.29 -0.27 2.54 16 38 H 0.07 0.94 7.98 -51.93 -0.41 0.52 16 39 H 0.03 0.41 8.02 -51.93 -0.42 -0.01 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -30.39 291.52 -8.55 -38.94 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.76 Total: 0.47 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.24 Total: -15.53 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.27 Total: -45.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.39 -8.55 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389344043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.703 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds