Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99611 * 2 1 4 4 H 1.48501 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47377 * 300.00217 * 3 2 1 6 6 H 1.48507 * 109.46965 * 60.00028 * 3 2 1 7 7 C 1.37873 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47384 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47464 * 179.97438 * 10 9 7 12 12 C 1.48000 * 111.00117 * 293.95543 * 11 10 9 13 13 C 1.50446 * 112.82435 * 191.34388 * 12 11 10 14 14 C 1.54311 * 108.49106 * 93.73383 * 13 12 11 15 15 C 1.45880 * 112.19289 * 281.44917 * 14 13 12 16 16 C 1.54317 * 112.17665 * 61.11729 * 15 14 13 17 17 H 1.09005 * 109.63157 * 41.38751 * 16 15 14 18 18 C 1.53006 * 109.62963 * 161.77473 * 16 15 14 19 19 N 1.46895 * 109.47374 * 294.61038 * 18 16 15 20 20 C 1.47744 * 110.83824 * 165.26413 * 11 10 9 21 21 H 0.96994 * 120.00116 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47173 * 59.99357 * 9 7 2 23 23 H 1.08997 * 109.46728 * 299.99731 * 9 7 2 24 24 H 1.09004 * 109.47212 * 59.99722 * 10 9 7 25 25 H 1.08995 * 109.47180 * 300.00293 * 10 9 7 26 26 H 1.09005 * 108.81400 * 70.47867 * 12 11 10 27 27 H 1.08999 * 108.81470 * 312.20759 * 12 11 10 28 28 H 1.08997 * 109.63043 * 334.03405 * 13 12 11 29 29 H 1.09003 * 109.80036 * 213.53177 * 13 12 11 30 30 H 1.09001 * 108.93283 * 160.75400 * 14 13 12 31 31 H 1.08992 * 108.86503 * 42.10204 * 14 13 12 32 32 H 1.09003 * 108.93960 * 300.42671 * 15 14 13 33 33 H 1.08995 * 108.93812 * 181.81687 * 15 14 13 34 34 H 1.09007 * 109.46744 * 54.60717 * 18 16 15 35 35 H 1.08995 * 109.46794 * 174.60962 * 18 16 15 36 36 H 1.00896 * 111.00547 * 180.02562 * 19 18 16 37 37 H 1.00909 * 111.00042 * 303.95547 * 19 18 16 38 38 H 1.09005 * 108.87381 * 324.06065 * 20 11 10 39 39 H 1.09001 * 108.60008 * 205.87547 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5112 -4.9342 -0.0033 12 6 0.7606 -5.1138 1.2596 13 6 0.2172 -6.5073 1.4223 14 6 1.2338 -7.3374 2.2338 15 6 2.3568 -7.7848 1.4173 16 6 3.1558 -6.6033 0.8280 17 1 3.2676 -5.8244 1.5824 18 6 4.5365 -7.0883 0.3815 19 7 5.3075 -7.5189 1.5554 20 6 2.4049 -6.0567 -0.3555 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6243 -2.5575 0.8880 24 1 2.8722 -3.6050 0.8873 25 1 2.8722 -3.6034 -0.8926 26 1 -0.0700 -4.4082 1.2782 27 1 1.4235 -4.8951 2.0967 28 1 0.0735 -6.9611 0.4417 29 1 -0.7343 -6.4729 1.9529 30 1 0.7279 -8.2095 2.6479 31 1 1.6133 -6.7268 3.0531 32 1 1.9776 -8.3981 0.5998 33 1 3.0224 -8.3903 2.0324 34 1 4.4223 -7.9267 -0.3057 35 1 5.0621 -6.2760 -0.1204 36 1 6.2243 -7.8436 1.2867 37 1 5.3722 -6.7779 2.2373 38 1 3.1236 -5.7149 -1.1004 39 1 1.8045 -6.8558 -0.7903 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389344046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = -17.940945 kcal Electronic energy + Delta-G solvation = -16395.791297 eV Core-core repulsion = 13951.162774 eV Total energy + Delta-G solvation = -2444.628522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36547 -35.45523 -34.26069 -32.75461 -31.21549 -29.63585 -26.71440 -24.93670 -24.09024 -22.50497 -20.63085 -20.24900 -18.94346 -16.45887 -16.07592 -15.46678 -15.06524 -14.76627 -14.40994 -13.92481 -13.85135 -13.43933 -12.98778 -12.61906 -12.19609 -12.09191 -11.83213 -11.61598 -11.27255 -10.93657 -10.73121 -10.68821 -10.50049 -10.41131 -10.32980 -9.98902 -9.74690 -9.29658 -9.06193 -8.77540 -8.31246 -7.49930 -5.97546 -3.99786 3.31640 3.38960 3.42709 4.36664 4.48760 4.57003 4.73826 4.96998 5.06859 5.30366 5.38318 5.42369 5.46801 5.63723 5.69530 5.79834 5.86539 5.95872 6.02782 6.15021 6.25233 6.31511 6.37301 6.44779 6.50186 6.54754 6.64033 6.65365 7.00251 7.03611 7.29902 7.59342 7.69547 7.86445 7.96758 8.12683 8.47014 9.08030 9.63723 11.13917 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033714 B = 0.006147 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.311932 B = 4554.163648 C = 5090.697099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.068 3.932 11 N -0.547 5.547 12 C 0.065 3.935 13 C -0.121 4.121 14 C -0.119 4.119 15 C -0.104 4.104 16 C -0.114 4.114 17 H 0.069 0.931 18 C 0.069 3.931 19 N -0.850 5.850 20 C 0.064 3.936 21 H 0.259 0.741 22 H 0.024 0.976 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.337 0.663 37 H 0.340 0.660 38 H 0.062 0.938 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -14.993 2.665 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.059 4.059 11 N -0.271 5.271 12 C -0.062 4.062 13 C -0.159 4.159 14 C -0.157 4.157 15 C -0.141 4.141 16 C -0.134 4.134 17 H 0.087 0.913 18 C -0.062 4.062 19 N -0.379 5.379 20 C -0.065 4.065 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.081 0.919 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.839 -15.403 2.404 16.324 hybrid contribution 1.739 1.769 0.384 2.510 sum 6.578 -13.634 2.789 15.393 Atomic orbital electron populations 1.69982 1.06003 1.26402 1.50853 1.24989 0.94813 0.99121 0.95383 0.86567 0.80059 0.83946 0.77588 1.19846 1.20975 1.21037 1.21243 0.92946 0.91166 1.50598 0.92890 1.19094 0.94042 0.90124 0.97761 1.22322 0.96492 0.88605 0.98463 1.61945 1.28825 1.02384 1.33926 1.21725 0.97973 0.96540 0.89969 1.21467 0.97972 0.95783 1.00635 1.20611 0.96627 0.99698 0.98753 1.20479 0.96666 0.97304 0.99693 1.21550 0.94316 0.98081 0.99483 0.91254 1.21844 0.93685 0.98580 0.92132 1.58745 1.21372 1.43033 1.14753 1.21881 0.94511 0.94247 0.95886 0.93080 0.95791 0.96555 0.96654 0.92446 0.90529 0.95446 0.91037 0.91630 0.92655 0.92540 0.92790 0.91088 0.91117 0.95508 0.85098 0.84832 0.91900 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 10 C 0.07 1.47 4.82 -3.83 -0.02 1.45 16 11 N -0.55 -10.13 4.68 -236.14 -1.11 -11.23 16 12 C 0.07 1.13 4.46 -4.49 -0.02 1.11 16 13 C -0.12 -1.68 5.63 -27.32 -0.15 -1.83 16 14 C -0.12 -1.48 5.30 -29.41 -0.16 -1.63 16 15 C -0.10 -1.26 4.69 -29.41 -0.14 -1.40 16 16 C -0.11 -1.49 1.98 -91.20 -0.18 -1.67 16 17 H 0.07 1.05 6.87 -51.93 -0.36 0.70 16 18 C 0.07 0.78 6.00 -3.82 -0.02 0.75 16 19 N -0.85 -8.54 8.88 -10.37 -0.09 -8.63 16 20 C 0.06 0.95 4.71 -4.64 -0.02 0.93 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.02 0.45 6.79 -51.93 -0.35 0.10 16 24 H 0.02 0.33 7.83 -51.93 -0.41 -0.08 16 25 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 26 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 27 H 0.03 0.49 6.38 -51.93 -0.33 0.16 16 28 H 0.07 1.01 7.09 -51.93 -0.37 0.64 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.73 7.51 -51.93 -0.39 0.34 16 32 H 0.05 0.64 7.53 -51.93 -0.39 0.24 16 33 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 36 H 0.34 2.75 9.08 -39.29 -0.36 2.39 16 37 H 0.34 3.36 8.99 -39.29 -0.35 3.00 16 38 H 0.06 0.94 7.01 -51.93 -0.36 0.58 16 39 H 0.06 0.93 6.61 -51.93 -0.34 0.58 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -30.12 295.04 -9.10 -39.21 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.80 Total: 1.23 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.26 Total: -15.39 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.46 Total: -46.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.12 -9.10 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389344046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.271 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds