Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 55.00329 * 3 2 1 5 5 C 1.53000 * 109.47341 * 295.00521 * 3 2 1 6 6 C 1.53001 * 109.46997 * 174.99904 * 3 2 1 7 7 C 1.52995 * 109.46862 * 184.99826 * 6 3 2 8 8 H 1.09003 * 110.27444 * 55.64399 * 7 6 3 9 9 C 1.54951 * 110.30889 * 177.83417 * 7 6 3 10 10 C 1.55308 * 100.94118 * 155.36074 * 9 7 6 11 11 C 1.54378 * 102.25526 * 325.86893 * 10 9 7 12 12 C 1.52996 * 109.83301 * 261.84208 * 11 10 9 13 13 C 1.50698 * 109.90551 * 140.90909 * 11 10 9 14 14 H 1.07999 * 119.99983 * 0.36966 * 13 11 10 15 15 C 1.37878 * 120.00178 * 180.36461 * 13 11 10 16 16 N 1.31516 * 119.99576 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00039 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46970 * 90.00572 * 17 15 13 19 19 H 1.48499 * 109.46926 * 210.00175 * 17 15 13 20 20 H 1.48495 * 109.47145 * 330.00371 * 17 15 13 21 21 O 1.43241 * 107.58962 * 21.35710 * 11 10 9 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.08994 * 109.47281 * 59.99487 * 5 3 2 28 28 H 1.09004 * 109.47031 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.46818 * 300.00038 * 5 3 2 30 30 H 1.08993 * 109.47488 * 305.00558 * 6 3 2 31 31 H 1.09004 * 109.46738 * 65.00719 * 6 3 2 32 32 H 1.08994 * 111.12636 * 273.28505 * 9 7 6 33 33 H 1.09004 * 111.12153 * 37.44779 * 9 7 6 34 34 H 1.08998 * 110.84584 * 207.67840 * 10 9 7 35 35 H 1.09005 * 110.84541 * 84.06083 * 10 9 7 36 36 H 1.08997 * 109.47079 * 179.58678 * 12 11 10 37 37 H 1.09000 * 109.47208 * 299.58635 * 12 11 10 38 38 H 1.09000 * 109.47328 * 59.58843 * 12 11 10 39 39 H 0.97007 * 119.99555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8849 0.2511 8 1 3.5753 3.3828 1.0883 9 6 5.6030 2.9066 0.4343 10 6 5.9437 4.3241 -0.1010 11 6 4.9029 4.5083 -1.2262 12 6 5.5386 4.1838 -2.5795 13 6 4.3943 5.9269 -1.2275 14 1 4.7728 6.6368 -0.5070 15 6 3.4459 6.3184 -2.1485 16 7 2.9847 5.4537 -3.0255 17 14 2.8160 8.0770 -2.1505 18 1 3.6652 8.9059 -3.0432 19 1 1.4140 8.1000 -2.6394 20 1 2.8681 8.6230 -0.7705 21 8 3.8218 3.6048 -0.9681 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.5490 2.1253 -1.3968 28 1 1.9990 3.1541 -1.3074 29 1 2.0698 1.5876 -2.1491 30 1 3.8571 0.8799 1.0112 31 1 4.0030 0.9836 -0.7597 32 1 5.8749 2.8076 1.4852 33 1 6.0812 2.1339 -0.1677 34 1 6.9571 4.3543 -0.5012 35 1 5.8103 5.0752 0.6776 36 1 4.7970 4.3086 -3.3685 37 1 6.3764 4.8578 -2.7584 38 1 5.8953 3.1538 -2.5758 39 1 2.3172 5.7290 -3.6733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394414858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -74.034878 kcal Electronic energy + Delta-G solvation = -16991.139333 eV Core-core repulsion = 14511.785644 eV Total energy + Delta-G solvation = -2479.353689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.60878 -36.17528 -32.97082 -31.00432 -30.88212 -28.90665 -26.67217 -25.19987 -24.15129 -22.20425 -20.08111 -19.40758 -19.21576 -16.41584 -15.53570 -14.68068 -14.55262 -14.09191 -13.87534 -13.22701 -12.92013 -12.59370 -12.07195 -11.94366 -11.67367 -11.51271 -11.33442 -11.10246 -10.97678 -10.87434 -10.73278 -10.62138 -10.40720 -10.20224 -10.02310 -9.92791 -9.86466 -9.52681 -9.12880 -8.96450 -8.38866 -7.73234 -5.87817 -4.03382 3.33193 3.40663 3.43524 4.47602 5.00352 5.12425 5.31534 5.41795 5.50920 5.62102 5.69863 5.77842 5.92776 6.03644 6.06497 6.12320 6.20850 6.32434 6.35230 6.40439 6.48410 6.57905 6.63246 6.65273 6.72031 6.82882 6.88341 6.98122 7.02001 7.09344 7.19831 7.47305 7.78716 7.86435 8.18681 8.47030 8.75316 9.15392 9.67228 11.13377 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.009376 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.220673 B = 2985.727979 C = 3676.579860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.060 0.940 5 C -0.150 4.150 6 C -0.109 4.109 7 C 0.078 3.922 8 H 0.048 0.952 9 C -0.153 4.153 10 C -0.141 4.141 11 C 0.225 3.775 12 C -0.137 4.137 13 C -0.532 4.532 14 H 0.055 0.945 15 C 0.082 3.918 16 N -0.858 5.858 17 Si 0.884 3.116 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.276 1.276 21 O -0.338 6.338 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.110 0.890 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.032 0.968 38 H 0.010 0.990 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 -7.942 5.055 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.078 0.922 5 C -0.207 4.207 6 C -0.146 4.146 7 C 0.019 3.981 8 H 0.066 0.934 9 C -0.191 4.191 10 C -0.179 4.179 11 C 0.187 3.813 12 C -0.195 4.195 13 C -0.570 4.570 14 H 0.073 0.927 15 C -0.123 4.123 16 N -0.495 5.495 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.200 1.200 21 O -0.258 6.258 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.029 0.971 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.535 -7.991 4.756 9.315 hybrid contribution -0.151 0.956 0.175 0.983 sum -0.686 -7.035 4.931 8.618 Atomic orbital electron populations 1.21807 0.96466 1.00614 1.01995 1.21607 0.95504 0.97561 1.01000 1.21083 0.95061 0.94607 0.99535 0.92187 1.22053 0.98565 1.05045 0.94995 1.21784 0.95603 0.96419 1.00835 1.22675 0.92760 0.91730 0.90953 0.93379 1.23244 0.97527 0.98421 0.99904 1.23198 0.99974 0.94845 0.99848 1.19641 0.82933 0.88959 0.89725 1.21959 0.99844 0.95793 1.01857 1.21280 1.24501 0.94479 1.16741 0.92672 1.24958 0.95756 0.96554 0.95009 1.69954 1.28443 1.33314 1.17786 0.86755 0.78193 0.85679 0.78203 1.20782 1.21229 1.20049 1.88735 1.44735 1.54918 1.37447 0.93120 0.92302 0.93618 0.92977 0.92435 0.94949 0.87201 0.93909 0.92660 0.91972 0.92324 0.91829 0.92511 0.92002 0.89243 0.94904 0.97134 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.16 0.36 -1.57 16 2 C -0.12 -1.65 5.40 -26.73 -0.14 -1.80 16 3 C -0.08 -1.41 2.39 -90.62 -0.22 -1.63 16 4 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.15 -2.93 8.36 37.16 0.31 -2.62 16 6 C -0.11 -1.85 4.55 -26.73 -0.12 -1.98 16 7 C 0.08 1.55 3.39 -25.70 -0.09 1.47 16 8 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 9 C -0.15 -2.81 6.57 -24.48 -0.16 -2.97 16 10 C -0.14 -2.97 6.07 -24.79 -0.15 -3.12 16 11 C 0.22 5.58 0.82 -91.05 -0.07 5.50 16 12 C -0.14 -3.35 8.50 37.16 0.32 -3.03 16 13 C -0.53 -14.59 8.22 -34.44 -0.28 -14.87 16 14 H 0.06 1.51 7.53 -52.49 -0.39 1.11 16 15 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 16 N -0.86 -24.15 10.92 55.43 0.61 -23.54 16 17 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 O -0.34 -8.26 6.55 -35.23 -0.23 -8.49 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.58 6.56 -51.93 -0.34 0.24 16 28 H 0.11 2.63 5.30 -51.93 -0.28 2.35 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 35 H 0.06 1.31 7.66 -51.93 -0.40 0.91 16 36 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -27.75 299.08 -7.58 -35.33 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.10 Total: 0.41 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -0.35 Total: -24.44 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.61 Total: -23.54 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.23 Total: -8.49 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.75 -7.58 -35.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.700 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds