Wall clock time and date at job start Mon Mar 30 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47196 * 55.00329 * 3 2 1 5 5 C 1.53000 * 109.47341 * 295.00521 * 3 2 1 6 6 C 1.53001 * 109.46997 * 174.99904 * 3 2 1 7 7 C 1.52995 * 109.46862 * 184.99826 * 6 3 2 8 8 H 1.09003 * 110.27444 * 55.64399 * 7 6 3 9 9 C 1.54951 * 110.30889 * 177.83417 * 7 6 3 10 10 C 1.55308 * 100.94118 * 155.36074 * 9 7 6 11 11 C 1.54378 * 102.25526 * 325.86893 * 10 9 7 12 12 C 1.52996 * 109.83301 * 261.84208 * 11 10 9 13 13 C 1.50698 * 109.90551 * 140.90909 * 11 10 9 14 14 H 1.07999 * 119.99983 * 0.36966 * 13 11 10 15 15 C 1.37878 * 120.00178 * 180.36461 * 13 11 10 16 16 N 1.31516 * 119.99576 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00039 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46970 * 90.00572 * 17 15 13 19 19 H 1.48499 * 109.46926 * 210.00175 * 17 15 13 20 20 H 1.48495 * 109.47145 * 330.00371 * 17 15 13 21 21 O 1.43241 * 107.58962 * 21.35710 * 11 10 9 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.08994 * 109.47281 * 59.99487 * 5 3 2 28 28 H 1.09004 * 109.47031 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.46818 * 300.00038 * 5 3 2 30 30 H 1.08993 * 109.47488 * 305.00558 * 6 3 2 31 31 H 1.09004 * 109.46738 * 65.00719 * 6 3 2 32 32 H 1.08994 * 111.12636 * 273.28505 * 9 7 6 33 33 H 1.09004 * 111.12153 * 37.44779 * 9 7 6 34 34 H 1.08998 * 110.84584 * 207.67840 * 10 9 7 35 35 H 1.09005 * 110.84541 * 84.06083 * 10 9 7 36 36 H 1.08997 * 109.47079 * 179.58678 * 12 11 10 37 37 H 1.09000 * 109.47208 * 299.58635 * 12 11 10 38 38 H 1.09000 * 109.47328 * 59.58843 * 12 11 10 39 39 H 0.97007 * 119.99555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8849 0.2511 8 1 3.5753 3.3828 1.0883 9 6 5.6030 2.9066 0.4343 10 6 5.9437 4.3241 -0.1010 11 6 4.9029 4.5083 -1.2262 12 6 5.5386 4.1838 -2.5795 13 6 4.3943 5.9269 -1.2275 14 1 4.7728 6.6368 -0.5070 15 6 3.4459 6.3184 -2.1485 16 7 2.9847 5.4537 -3.0255 17 14 2.8160 8.0770 -2.1505 18 1 3.6652 8.9059 -3.0432 19 1 1.4140 8.1000 -2.6394 20 1 2.8681 8.6230 -0.7705 21 8 3.8218 3.6048 -0.9681 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.5490 2.1253 -1.3968 28 1 1.9990 3.1541 -1.3074 29 1 2.0698 1.5876 -2.1491 30 1 3.8571 0.8799 1.0112 31 1 4.0030 0.9836 -0.7597 32 1 5.8749 2.8076 1.4852 33 1 6.0812 2.1339 -0.1677 34 1 6.9571 4.3543 -0.5012 35 1 5.8103 5.0752 0.6776 36 1 4.7970 4.3086 -3.3685 37 1 6.3764 4.8578 -2.7584 38 1 5.8953 3.1538 -2.5758 39 1 2.3172 5.7290 -3.6733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394414858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:13 Heat of formation + Delta-G solvation = -87.865179 kcal Electronic energy + Delta-G solvation = -16991.739060 eV Core-core repulsion = 14511.785644 eV Total energy + Delta-G solvation = -2479.953416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27378 -37.56398 -34.87948 -32.70335 -32.46047 -30.44372 -28.26730 -27.24913 -25.62181 -23.63639 -21.59680 -21.15350 -20.64559 -18.39134 -17.19579 -16.49207 -16.11315 -15.54114 -15.23452 -14.91942 -14.45057 -14.06165 -13.88262 -13.52190 -13.20549 -13.05149 -12.80892 -12.75170 -12.73167 -12.60008 -12.35356 -12.21249 -12.05479 -11.90588 -11.70336 -11.35197 -11.24385 -11.17100 -10.84724 -10.69107 -10.41501 -9.58512 -7.95329 -6.17435 1.40434 1.42472 1.50822 2.46175 3.16928 3.63591 3.84032 4.03923 4.15845 4.23033 4.31722 4.47252 4.54060 4.68994 4.75108 4.76795 4.80056 4.98748 5.00643 5.01851 5.06934 5.09166 5.13109 5.17981 5.19989 5.30467 5.32166 5.40758 5.48023 5.50928 5.60101 5.67885 5.76921 6.05844 6.21696 6.44199 6.76602 7.27169 7.57853 9.03626 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.009376 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.220673 B = 2985.727979 C = 3676.579860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.082 4.082 4 H 0.057 0.943 5 C -0.141 4.141 6 C -0.101 4.101 7 C 0.064 3.936 8 H 0.038 0.962 9 C -0.139 4.139 10 C -0.139 4.139 11 C 0.209 3.791 12 C -0.128 4.128 13 C -0.553 4.553 14 H 0.047 0.953 15 C 0.037 3.963 16 N -0.880 5.880 17 Si 0.940 3.060 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.361 6.361 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.025 0.975 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -9.236 6.450 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.076 0.924 5 C -0.198 4.198 6 C -0.138 4.138 7 C 0.006 3.994 8 H 0.056 0.944 9 C -0.177 4.177 10 C -0.177 4.177 11 C 0.171 3.829 12 C -0.186 4.186 13 C -0.590 4.590 14 H 0.065 0.935 15 C -0.165 4.165 16 N -0.517 5.517 17 Si 0.767 3.233 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.281 6.281 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.243 -9.286 6.158 11.145 hybrid contribution -0.250 1.358 -0.250 1.403 sum -0.492 -7.928 5.909 9.899 Atomic orbital electron populations 1.21802 0.95686 1.01849 1.01521 1.21545 0.96184 0.95273 1.02026 1.21056 0.95169 0.96365 0.97428 0.92446 1.21896 0.98799 1.02513 0.96563 1.21740 0.95502 0.94548 1.02016 1.22949 0.94343 0.92934 0.89158 0.94401 1.23196 0.95884 0.96698 1.01885 1.23108 0.99448 0.96629 0.98528 1.19716 0.84085 0.88042 0.91037 1.21828 0.98978 0.96752 1.01064 1.21636 1.24729 0.96156 1.16527 0.93503 1.25612 0.96124 0.99878 0.94894 1.70095 1.28729 1.34694 1.18204 0.85864 0.77562 0.81761 0.78144 1.20094 1.21197 1.19876 1.88730 1.44902 1.55239 1.39273 0.92783 0.93627 0.91551 0.90791 0.92491 0.94224 0.91538 0.95023 0.89314 0.92651 0.89224 0.90710 0.91298 0.92664 0.92304 0.94648 0.95580 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.67 71.98 0.70 -2.79 16 2 C -0.11 -2.82 5.40 30.60 0.17 -2.66 16 3 C -0.08 -2.61 2.39 -10.79 -0.03 -2.64 16 4 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.14 -5.57 8.36 71.98 0.60 -4.97 16 6 C -0.10 -3.21 4.55 30.59 0.14 -3.07 16 7 C 0.06 2.50 3.39 31.26 0.11 2.61 16 8 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 9 C -0.14 -4.73 6.57 32.05 0.21 -4.52 16 10 C -0.14 -5.70 6.07 31.85 0.19 -5.50 16 11 C 0.21 10.43 0.82 -11.07 -0.01 10.42 16 12 C -0.13 -6.34 8.50 71.98 0.61 -5.73 16 13 C -0.55 -30.81 8.22 25.60 0.21 -30.60 16 14 H 0.05 2.60 7.53 -2.91 -0.02 2.58 16 15 C 0.04 2.10 5.26 84.65 0.45 2.54 16 16 N -0.88 -50.96 10.92 21.45 0.23 -50.72 16 17 Si 0.94 44.33 29.54 68.60 2.03 46.36 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 21 O -0.36 -17.83 6.55 -148.98 -0.98 -18.81 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.16 6.56 -2.39 -0.02 1.14 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.44 6.56 -2.39 -0.02 1.43 16 28 H 0.07 3.28 5.30 -2.39 -0.01 3.27 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.39 8.06 -2.38 -0.02 2.37 16 34 H 0.07 2.60 7.82 -2.39 -0.02 2.58 16 35 H 0.05 2.29 7.66 -2.38 -0.02 2.27 16 36 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 37 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -60.62 299.08 5.61 -55.00 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.98 Total: 15.07 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.34 Total: -46.91 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.23 Total: -50.72 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.98 Total: -18.81 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.62 5.61 -55.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.861 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds