Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46924 * 2 1 4 4 H 1.09002 * 109.47208 * 54.99849 * 3 2 1 5 5 C 1.53005 * 109.46920 * 294.99933 * 3 2 1 6 6 C 1.53003 * 109.46928 * 175.00065 * 3 2 1 7 7 C 1.53000 * 109.46822 * 184.99819 * 6 3 2 8 8 H 1.08995 * 110.35313 * 304.30712 * 7 6 3 9 9 C 1.54952 * 110.30674 * 182.16267 * 7 6 3 10 10 C 1.55305 * 100.94262 * 204.63930 * 9 7 6 11 11 C 1.54383 * 102.25110 * 34.13478 * 10 9 7 12 12 C 1.53004 * 109.90591 * 98.19811 * 11 10 9 13 13 C 1.50699 * 109.83314 * 219.12764 * 11 10 9 14 14 H 1.08007 * 119.99446 * 352.89613 * 13 11 10 15 15 C 1.37873 * 120.00119 * 172.89517 * 13 11 10 16 16 N 1.31515 * 119.99932 * 165.07794 * 15 13 11 17 17 Si 1.86800 * 120.00136 * 345.07382 * 15 13 11 18 18 H 1.48493 * 109.47046 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46962 * 300.00316 * 17 15 13 20 20 H 1.48500 * 109.47201 * 60.00111 * 17 15 13 21 21 O 1.43237 * 107.59005 * 338.64267 * 11 10 9 22 22 H 1.09001 * 109.47183 * 300.00187 * 1 2 3 23 23 H 1.09000 * 109.47339 * 60.00343 * 1 2 3 24 24 H 1.08995 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47183 * 239.99813 * 2 1 3 26 26 H 1.08997 * 109.46653 * 119.99919 * 2 1 3 27 27 H 1.09000 * 109.46942 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47111 * 299.99975 * 5 3 2 29 29 H 1.08992 * 109.47527 * 60.00080 * 5 3 2 30 30 H 1.08992 * 109.47004 * 64.99706 * 6 3 2 31 31 H 1.09002 * 109.46924 * 304.99550 * 6 3 2 32 32 H 1.09004 * 111.12685 * 322.56208 * 9 7 6 33 33 H 1.09003 * 111.12030 * 86.67934 * 9 7 6 34 34 H 1.08995 * 110.84589 * 275.94617 * 10 9 7 35 35 H 1.09000 * 110.84370 * 152.32169 * 10 9 7 36 36 H 1.09001 * 109.47217 * 174.70051 * 12 11 10 37 37 H 1.09003 * 109.46730 * 294.70384 * 12 11 10 38 38 H 1.08999 * 109.46884 * 54.70010 * 12 11 10 39 39 H 0.97006 * 119.99870 * 354.89401 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8850 0.2511 8 1 3.7150 3.4821 -0.5912 9 6 5.6119 2.9131 0.3251 10 6 5.8472 4.2558 1.0692 11 6 4.6351 4.3184 2.0232 12 6 5.0430 3.8347 3.4163 13 6 4.1203 5.7325 2.1037 14 1 4.6673 6.5340 1.6296 15 6 2.9512 6.0029 2.7826 16 7 2.6512 7.2413 3.1082 17 14 1.7931 4.6103 3.2399 18 1 0.6162 5.1611 3.9587 19 1 1.3400 3.9182 2.0066 20 1 2.5023 3.6447 4.1173 21 8 3.6193 3.4612 1.4893 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.9989 3.1541 -1.3076 28 1 2.0698 1.5875 -2.1492 29 1 0.5489 2.1252 -1.3970 30 1 4.0029 0.9836 -0.7596 31 1 3.8570 0.8801 1.0114 32 1 5.9929 2.0713 0.9034 33 1 6.0525 2.9331 -0.6718 34 1 5.8354 5.0931 0.3715 35 1 6.7814 4.2298 1.6301 36 1 4.2101 3.9699 4.1062 37 1 5.3094 2.7787 3.3706 38 1 5.9004 4.4108 3.7643 39 1 3.2856 7.9550 2.9372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394414860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -78.017948 kcal Electronic energy + Delta-G solvation = -17013.995256 eV Core-core repulsion = 14534.468848 eV Total energy + Delta-G solvation = -2479.526408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.95573 -36.51412 -33.02554 -31.34628 -31.26095 -29.43530 -27.12849 -24.99833 -24.31120 -22.34511 -20.45223 -19.72261 -18.95860 -17.28935 -15.99168 -15.03803 -14.41695 -14.34829 -13.73507 -13.53576 -13.16932 -12.80489 -12.64205 -12.24041 -11.96581 -11.85967 -11.75285 -11.43174 -11.32653 -11.10411 -10.94785 -10.87055 -10.31919 -10.24229 -10.11174 -9.94877 -9.82686 -9.70000 -9.11990 -8.99603 -8.29389 -8.06312 -6.35672 -4.10299 3.62847 3.66109 3.91887 4.68698 4.83892 4.95645 5.12747 5.25864 5.37690 5.46393 5.51294 5.57742 5.72131 5.77219 5.78848 5.92478 5.98426 6.06322 6.13570 6.18094 6.22527 6.25332 6.31075 6.34609 6.42038 6.52971 6.56031 6.63005 6.68988 6.80689 6.83812 6.88281 7.01099 7.48179 8.12333 8.29291 8.46135 8.97522 9.65475 10.99532 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.010936 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.137800 B = 2559.844902 C = 3198.513030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.096 4.096 4 H 0.083 0.917 5 C -0.147 4.147 6 C -0.110 4.110 7 C 0.084 3.916 8 H 0.061 0.939 9 C -0.154 4.154 10 C -0.130 4.130 11 C 0.195 3.805 12 C -0.147 4.147 13 C -0.604 4.604 14 H 0.058 0.942 15 C 0.043 3.957 16 N -0.905 5.905 17 Si 1.069 2.931 18 H -0.308 1.308 19 H -0.270 1.270 20 H -0.279 1.279 21 O -0.379 6.379 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.050 0.950 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -13.195 -6.534 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.114 4.114 4 H 0.102 0.898 5 C -0.204 4.204 6 C -0.147 4.147 7 C 0.027 3.973 8 H 0.078 0.922 9 C -0.192 4.192 10 C -0.168 4.168 11 C 0.158 3.842 12 C -0.204 4.204 13 C -0.641 4.641 14 H 0.076 0.924 15 C -0.163 4.163 16 N -0.539 5.539 17 Si 0.900 3.100 18 H -0.237 1.237 19 H -0.196 1.196 20 H -0.206 1.206 21 O -0.300 6.300 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.718 -13.543 -5.758 14.734 hybrid contribution 1.858 0.503 -0.869 2.112 sum 1.140 -13.040 -6.628 14.672 Atomic orbital electron populations 1.21825 0.96278 1.00880 1.02110 1.21577 0.95672 0.96988 1.01283 1.21182 0.95603 0.95377 0.99253 0.89839 1.21899 1.00808 1.01079 0.96658 1.21773 0.95435 0.96347 1.01189 1.22750 0.91878 0.92861 0.89853 0.92172 1.23264 0.97068 0.98679 1.00140 1.23046 0.99228 0.95829 0.98694 1.20111 0.84690 0.90169 0.89271 1.22319 1.01146 0.97684 0.99277 1.22131 1.12323 0.90952 1.38650 0.92403 1.25907 0.97522 1.00676 0.92199 1.70907 1.38883 1.00842 1.43257 0.83732 0.74879 0.74370 0.77028 1.23679 1.19614 1.20621 1.88306 1.42468 1.63612 1.35627 0.92631 0.92604 0.93367 0.92595 0.92323 0.92066 0.93482 0.92967 0.91968 0.91846 0.91578 0.91759 0.91575 0.92220 0.92203 0.95399 0.93135 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 37.16 0.36 -1.45 16 2 C -0.12 -1.49 5.40 -26.73 -0.14 -1.63 16 3 C -0.10 -1.48 2.35 -90.62 -0.21 -1.69 16 4 H 0.08 1.56 7.31 -51.93 -0.38 1.18 16 5 C -0.15 -2.13 8.72 37.16 0.32 -1.80 16 6 C -0.11 -1.71 4.43 -26.73 -0.12 -1.83 16 7 C 0.08 1.59 3.25 -25.70 -0.08 1.51 16 8 H 0.06 1.17 6.44 -51.93 -0.33 0.83 16 9 C -0.15 -2.64 6.57 -24.48 -0.16 -2.80 16 10 C -0.13 -2.66 6.07 -24.78 -0.15 -2.81 16 11 C 0.20 4.71 0.78 -91.05 -0.07 4.64 16 12 C -0.15 -3.33 8.44 37.16 0.31 -3.02 16 13 C -0.60 -17.32 8.59 -34.44 -0.30 -17.61 16 14 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 15 C 0.04 1.27 5.34 -17.82 -0.10 1.18 16 16 N -0.91 -28.53 13.70 55.43 0.76 -27.77 16 17 Si 1.07 27.84 24.83 -169.99 -4.22 23.62 16 18 H -0.31 -8.13 7.11 56.52 0.40 -7.73 16 19 H -0.27 -6.79 6.29 56.52 0.36 -6.44 16 20 H -0.28 -6.87 5.64 56.52 0.32 -6.56 16 21 O -0.38 -8.85 6.22 -35.23 -0.22 -9.07 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.63 6.57 -51.93 -0.34 0.29 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.99 6.49 -51.93 -0.34 0.65 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.40 7.70 -51.93 -0.40 1.00 16 35 H 0.06 1.12 7.78 -51.93 -0.40 0.72 16 36 H 0.06 1.45 4.72 -51.93 -0.25 1.20 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -30.67 292.93 -6.72 -37.39 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.12 Total: -1.26 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -0.34 Total: -27.33 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.76 Total: -27.77 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.22 Total: -9.07 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.22 Total: 23.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.67 -6.72 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.630 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds