Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46924 * 2 1 4 4 H 1.09002 * 109.47208 * 54.99849 * 3 2 1 5 5 C 1.53005 * 109.46920 * 294.99933 * 3 2 1 6 6 C 1.53003 * 109.46928 * 175.00065 * 3 2 1 7 7 C 1.53000 * 109.46822 * 184.99819 * 6 3 2 8 8 H 1.08995 * 110.35313 * 304.30712 * 7 6 3 9 9 C 1.54952 * 110.30674 * 182.16267 * 7 6 3 10 10 C 1.55305 * 100.94262 * 204.63930 * 9 7 6 11 11 C 1.54383 * 102.25110 * 34.13478 * 10 9 7 12 12 C 1.53004 * 109.90591 * 98.19811 * 11 10 9 13 13 C 1.50699 * 109.83314 * 219.12764 * 11 10 9 14 14 H 1.08007 * 119.99446 * 352.89613 * 13 11 10 15 15 C 1.37873 * 120.00119 * 172.89517 * 13 11 10 16 16 N 1.31515 * 119.99932 * 165.07794 * 15 13 11 17 17 Si 1.86800 * 120.00136 * 345.07382 * 15 13 11 18 18 H 1.48493 * 109.47046 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.46962 * 300.00316 * 17 15 13 20 20 H 1.48500 * 109.47201 * 60.00111 * 17 15 13 21 21 O 1.43237 * 107.59005 * 338.64267 * 11 10 9 22 22 H 1.09001 * 109.47183 * 300.00187 * 1 2 3 23 23 H 1.09000 * 109.47339 * 60.00343 * 1 2 3 24 24 H 1.08995 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47183 * 239.99813 * 2 1 3 26 26 H 1.08997 * 109.46653 * 119.99919 * 2 1 3 27 27 H 1.09000 * 109.46942 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47111 * 299.99975 * 5 3 2 29 29 H 1.08992 * 109.47527 * 60.00080 * 5 3 2 30 30 H 1.08992 * 109.47004 * 64.99706 * 6 3 2 31 31 H 1.09002 * 109.46924 * 304.99550 * 6 3 2 32 32 H 1.09004 * 111.12685 * 322.56208 * 9 7 6 33 33 H 1.09003 * 111.12030 * 86.67934 * 9 7 6 34 34 H 1.08995 * 110.84589 * 275.94617 * 10 9 7 35 35 H 1.09000 * 110.84370 * 152.32169 * 10 9 7 36 36 H 1.09001 * 109.47217 * 174.70051 * 12 11 10 37 37 H 1.09003 * 109.46730 * 294.70384 * 12 11 10 38 38 H 1.08999 * 109.46884 * 54.70010 * 12 11 10 39 39 H 0.97006 * 119.99870 * 354.89401 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8850 0.2511 8 1 3.7150 3.4821 -0.5912 9 6 5.6119 2.9131 0.3251 10 6 5.8472 4.2558 1.0692 11 6 4.6351 4.3184 2.0232 12 6 5.0430 3.8347 3.4163 13 6 4.1203 5.7325 2.1037 14 1 4.6673 6.5340 1.6296 15 6 2.9512 6.0029 2.7826 16 7 2.6512 7.2413 3.1082 17 14 1.7931 4.6103 3.2399 18 1 0.6162 5.1611 3.9587 19 1 1.3400 3.9182 2.0066 20 1 2.5023 3.6447 4.1173 21 8 3.6193 3.4612 1.4893 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.9989 3.1541 -1.3076 28 1 2.0698 1.5875 -2.1492 29 1 0.5489 2.1252 -1.3970 30 1 4.0029 0.9836 -0.7596 31 1 3.8570 0.8801 1.0114 32 1 5.9929 2.0713 0.9034 33 1 6.0525 2.9331 -0.6718 34 1 5.8354 5.0931 0.3715 35 1 6.7814 4.2298 1.6301 36 1 4.2101 3.9699 4.1062 37 1 5.3094 2.7787 3.3706 38 1 5.9004 4.4108 3.7643 39 1 3.2856 7.9550 2.9372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394414860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -96.341000 kcal Electronic energy + Delta-G solvation = -17014.789803 eV Core-core repulsion = 14534.468848 eV Total energy + Delta-G solvation = -2480.320955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.57974 -37.74432 -35.05478 -33.02399 -32.87335 -30.78420 -28.44360 -26.89772 -25.82083 -23.72757 -21.85596 -21.30735 -20.44198 -19.43355 -17.55011 -16.38962 -15.82164 -15.70954 -15.51606 -15.30919 -14.67240 -14.42182 -14.18315 -13.75235 -13.53326 -13.24438 -13.05125 -12.79770 -12.72423 -12.64832 -12.34539 -12.12480 -11.96686 -11.90423 -11.62220 -11.43623 -11.30640 -11.08456 -11.01292 -10.85234 -10.51198 -9.95389 -8.70300 -6.45859 1.50533 1.57588 1.85477 2.53473 2.99625 3.39296 3.78276 3.90434 4.08162 4.15247 4.24541 4.29625 4.46204 4.52151 4.61064 4.68098 4.74201 4.79176 4.82094 4.85876 4.93751 4.96563 5.02971 5.05029 5.14528 5.17791 5.23319 5.25688 5.29815 5.39414 5.43354 5.61076 5.64773 5.72221 5.95811 6.06417 6.39610 6.84128 7.37568 8.62497 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.010936 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.137800 B = 2559.844902 C = 3198.513030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.099 4.099 4 H 0.043 0.957 5 C -0.145 4.145 6 C -0.102 4.102 7 C 0.070 3.930 8 H 0.047 0.953 9 C -0.137 4.137 10 C -0.132 4.132 11 C 0.186 3.814 12 C -0.144 4.144 13 C -0.604 4.604 14 H 0.022 0.978 15 C -0.005 4.005 16 N -0.941 5.941 17 Si 1.105 2.895 18 H -0.317 1.317 19 H -0.263 1.263 20 H -0.254 1.254 21 O -0.398 6.398 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -16.758 -7.561 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.118 4.118 4 H 0.062 0.938 5 C -0.202 4.202 6 C -0.139 4.139 7 C 0.013 3.987 8 H 0.065 0.935 9 C -0.174 4.174 10 C -0.170 4.170 11 C 0.148 3.852 12 C -0.201 4.201 13 C -0.642 4.642 14 H 0.040 0.960 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.932 3.068 18 H -0.246 1.246 19 H -0.188 1.188 20 H -0.180 1.180 21 O -0.319 6.319 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.104 -17.119 -6.799 18.420 hybrid contribution 1.657 1.662 -0.641 2.433 sum 1.760 -15.457 -7.440 17.244 Atomic orbital electron populations 1.21838 0.95922 1.01961 1.01518 1.21530 0.96005 0.94950 1.02429 1.21176 0.95673 0.96930 0.97994 0.93824 1.21878 1.01295 0.99780 0.97278 1.21748 0.95394 0.93892 1.02859 1.23076 0.93523 0.94548 0.87550 0.93498 1.23232 0.95541 0.97040 1.01626 1.22973 0.98353 0.97455 0.98182 1.20050 0.86066 0.87711 0.91354 1.22229 1.00546 0.99782 0.97567 1.22437 1.11511 0.93264 1.36953 0.95969 1.27048 0.99334 1.01595 0.92385 1.70997 1.39180 1.01535 1.46035 0.83259 0.73322 0.72727 0.77493 1.24648 1.18848 1.17969 1.88214 1.42816 1.63424 1.37488 0.94119 0.92392 0.91441 0.90479 0.92044 0.94672 0.90967 0.92501 0.88698 0.91437 0.89318 0.88872 0.93536 0.90473 0.94182 0.92185 0.92633 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.67 71.98 0.70 -2.56 16 2 C -0.11 -2.44 5.40 30.60 0.17 -2.28 16 3 C -0.10 -2.83 2.35 -10.79 -0.03 -2.85 16 4 H 0.04 1.59 7.31 -2.39 -0.02 1.57 16 5 C -0.15 -3.90 8.72 71.98 0.63 -3.27 16 6 C -0.10 -2.79 4.43 30.60 0.14 -2.65 16 7 C 0.07 2.47 3.25 31.26 0.10 2.58 16 8 H 0.05 1.77 6.44 -2.39 -0.02 1.76 16 9 C -0.14 -4.16 6.57 32.05 0.21 -3.95 16 10 C -0.13 -5.15 6.07 31.86 0.19 -4.96 16 11 C 0.19 8.83 0.78 -11.07 -0.01 8.82 16 12 C -0.14 -6.25 8.44 71.98 0.61 -5.64 16 13 C -0.60 -35.63 8.59 25.60 0.22 -35.41 16 14 H 0.02 1.42 7.83 -2.91 -0.02 1.40 16 15 C 0.00 -0.29 5.34 84.65 0.45 0.16 16 16 N -0.94 -61.73 13.70 21.45 0.29 -61.43 16 17 Si 1.11 57.32 24.83 68.60 1.70 59.02 16 18 H -0.32 -16.71 7.11 99.48 0.71 -16.00 16 19 H -0.26 -13.16 6.29 99.48 0.63 -12.53 16 20 H -0.25 -12.06 5.64 99.48 0.56 -11.50 16 21 O -0.40 -18.06 6.22 -148.98 -0.93 -18.99 16 22 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 1.17 6.57 -2.39 -0.02 1.16 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.03 1.11 6.49 -2.39 -0.02 1.09 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.44 6.56 -2.39 -0.02 1.43 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 2.34 8.06 -2.38 -0.02 2.33 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.96 7.70 -2.39 -0.02 1.94 16 35 H 0.08 2.71 7.78 -2.39 -0.02 2.69 16 36 H 0.04 1.87 4.72 -2.39 -0.01 1.86 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.30 8.08 -2.39 -0.02 2.28 16 39 H 0.25 16.61 8.73 -92.70 -0.81 15.80 16 Total: -1.00 -68.77 292.93 5.17 -63.60 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.72 Total: 9.81 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 3.38 Total: -52.01 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.29 Total: -61.43 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.93 Total: -18.99 kcal Atomic # 14 Polarization: 57.32 SS G_CDS: 1.70 Total: 59.02 kcal Total: -68.77 5.17 -63.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.737 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds