Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47187 * 2 1 4 4 H 1.08996 * 109.47445 * 54.99779 * 3 2 1 5 5 C 1.53001 * 109.47316 * 294.99858 * 3 2 1 6 6 C 1.53000 * 109.47079 * 174.99909 * 3 2 1 7 7 C 1.52996 * 109.47230 * 185.25534 * 6 3 2 8 8 H 1.08997 * 110.55308 * 50.58688 * 7 6 3 9 9 C 1.54998 * 110.61835 * 173.46360 * 7 6 3 10 10 C 1.54814 * 102.08893 * 155.52673 * 9 7 6 11 11 C 1.54097 * 104.19346 * 339.11807 * 10 9 7 12 12 C 1.52999 * 109.87741 * 117.39194 * 11 10 9 13 13 C 1.50696 * 109.88256 * 238.40224 * 11 10 9 14 14 H 1.08006 * 119.99930 * 357.29727 * 13 11 10 15 15 C 1.37878 * 120.00213 * 177.30817 * 13 11 10 16 16 N 1.31511 * 119.99853 * 188.08141 * 15 13 11 17 17 Si 1.86798 * 119.99655 * 8.07279 * 15 13 11 18 18 H 1.48502 * 109.46964 * 93.35428 * 17 15 13 19 19 H 1.48498 * 109.46918 * 213.35077 * 17 15 13 20 20 H 1.48495 * 109.47445 * 333.35541 * 17 15 13 21 21 O 1.43892 * 107.37083 * 358.10540 * 11 10 9 22 22 H 1.08997 * 109.47526 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47190 * 300.00050 * 1 2 3 24 24 H 1.09007 * 109.47101 * 60.00092 * 1 2 3 25 25 H 1.08997 * 109.46673 * 120.00291 * 2 1 3 26 26 H 1.09004 * 109.46741 * 239.99664 * 2 1 3 27 27 H 1.08997 * 109.47505 * 173.66848 * 5 3 2 28 28 H 1.09005 * 109.47209 * 293.66811 * 5 3 2 29 29 H 1.09006 * 109.46970 * 53.66142 * 5 3 2 30 30 H 1.08995 * 109.47256 * 305.25903 * 6 3 2 31 31 H 1.09006 * 109.46796 * 65.25844 * 6 3 2 32 32 H 1.09000 * 110.90949 * 273.72325 * 9 7 6 33 33 H 1.09004 * 110.90554 * 37.29730 * 9 7 6 34 34 H 1.08996 * 110.48793 * 97.79931 * 10 9 7 35 35 H 1.09009 * 110.48253 * 220.44018 * 10 9 7 36 36 H 1.09001 * 109.46871 * 60.00627 * 12 11 10 37 37 H 1.08999 * 109.46793 * 180.02562 * 12 11 10 38 38 H 1.08995 * 109.47113 * 300.00079 * 12 11 10 39 39 H 0.97006 * 119.99754 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 6 4.0640 2.8845 0.2575 8 1 3.5140 3.4102 1.0381 9 6 5.5858 2.9100 0.5506 10 6 5.9938 4.3079 0.0250 11 6 4.8666 4.6868 -0.9550 12 6 4.1417 5.9382 -0.4555 13 6 5.4419 4.9404 -2.3246 14 1 6.5093 4.8864 -2.4804 15 6 4.6058 5.2416 -3.3787 16 7 5.0861 5.3063 -4.6013 17 14 2.7908 5.5576 -3.0702 18 1 2.5653 7.0145 -2.8916 19 1 1.9999 5.0729 -4.2299 20 1 2.3642 4.8367 -1.8441 21 8 3.9483 3.5800 -1.0024 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8990 3.1831 -1.2614 28 1 2.1590 1.6573 -2.1403 29 1 0.5595 2.0264 -1.4520 30 1 3.8573 0.8761 1.0087 31 1 4.0031 0.9876 -0.7617 32 1 5.7775 2.8255 1.6202 33 1 6.1009 2.1218 0.0014 34 1 6.0432 5.0243 0.8450 35 1 6.9502 4.2556 -0.4953 36 1 4.8495 6.7641 -0.3848 37 1 3.3460 6.1999 -1.1530 38 1 3.7130 5.7418 0.5272 39 1 4.4979 5.5185 -5.3428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394414861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -63.575185 kcal Electronic energy + Delta-G solvation = -17080.739899 eV Core-core repulsion = 14601.839777 eV Total energy + Delta-G solvation = -2478.900123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.95736 -36.45396 -32.97924 -31.33963 -31.18398 -29.54494 -27.11778 -25.33157 -24.37651 -22.43809 -20.22479 -19.60851 -19.33170 -16.87257 -15.80985 -14.93182 -14.65119 -14.36026 -13.82564 -13.61326 -12.95064 -12.88063 -12.65346 -12.50826 -12.10570 -11.80944 -11.65462 -11.44078 -11.34785 -11.04860 -10.89418 -10.64923 -10.42066 -10.24254 -10.18937 -9.83959 -9.81453 -9.55450 -9.52304 -8.85525 -8.48737 -8.16108 -6.06324 -4.12110 3.39822 3.51055 3.64196 4.54901 4.79000 4.94034 5.14173 5.21707 5.39698 5.51510 5.54647 5.61023 5.70787 5.81311 5.86225 5.96080 5.98198 6.13197 6.16111 6.18687 6.28210 6.30467 6.34401 6.42419 6.45314 6.53351 6.60829 6.64272 6.71375 6.78012 6.82020 6.95722 7.12067 7.30635 7.74335 8.33899 8.51005 8.95367 9.59615 11.04586 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.010622 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.014457 B = 2635.518790 C = 3264.242074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.061 0.939 5 C -0.157 4.157 6 C -0.106 4.106 7 C 0.070 3.930 8 H 0.049 0.951 9 C -0.147 4.147 10 C -0.130 4.130 11 C 0.190 3.810 12 C -0.156 4.156 13 C -0.512 4.512 14 H 0.076 0.924 15 C 0.085 3.915 16 N -0.893 5.893 17 Si 0.878 3.122 18 H -0.293 1.293 19 H -0.303 1.303 20 H -0.221 1.221 21 O -0.355 6.355 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.030 0.970 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.740 -7.102 10.968 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.079 0.921 5 C -0.214 4.214 6 C -0.144 4.144 7 C 0.011 3.989 8 H 0.067 0.933 9 C -0.185 4.185 10 C -0.168 4.168 11 C 0.152 3.848 12 C -0.214 4.214 13 C -0.549 4.549 14 H 0.094 0.906 15 C -0.119 4.119 16 N -0.530 5.530 17 Si 0.709 3.291 18 H -0.221 1.221 19 H -0.232 1.232 20 H -0.145 1.145 21 O -0.275 6.275 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.899 -7.128 10.612 14.079 hybrid contribution -0.740 0.340 0.119 0.823 sum -6.640 -6.788 10.731 14.329 Atomic orbital electron populations 1.21825 0.96387 1.00887 1.01892 1.21589 0.95525 0.97157 1.01445 1.21102 0.95329 0.95094 0.98893 0.92073 1.22142 0.99099 1.03693 0.96432 1.21681 0.95150 0.95775 1.01767 1.22901 0.93957 0.92657 0.89359 0.93314 1.23086 0.97081 0.98679 0.99643 1.22854 1.00838 0.94895 0.98180 1.20050 0.85331 0.83750 0.95656 1.22535 1.00292 1.00131 0.98397 1.20960 0.94908 1.48227 0.90786 0.90564 1.25029 0.99073 0.93174 0.94636 1.69952 1.36468 1.47567 0.99046 0.87091 0.85575 0.77562 0.78830 1.22106 1.23173 1.14507 1.89280 1.62610 1.43233 1.32397 0.93364 0.93095 0.92366 0.92618 0.92127 0.89563 0.92850 0.94192 0.92018 0.91121 0.92306 0.91259 0.92839 0.91070 0.92482 0.93688 0.95066 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.68 37.16 0.36 -1.36 16 2 C -0.12 -1.49 5.40 -26.73 -0.14 -1.64 16 3 C -0.09 -1.27 2.38 -90.62 -0.22 -1.49 16 4 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.16 -2.74 8.27 37.16 0.31 -2.43 16 6 C -0.11 -1.66 4.53 -26.73 -0.12 -1.78 16 7 C 0.07 1.26 3.10 -25.68 -0.08 1.18 16 8 H 0.05 0.86 8.12 -51.93 -0.42 0.43 16 9 C -0.15 -2.54 6.59 -24.72 -0.16 -2.70 16 10 C -0.13 -2.59 6.26 -25.20 -0.16 -2.74 16 11 C 0.19 4.45 0.70 -91.20 -0.06 4.39 16 12 C -0.16 -3.41 7.88 37.16 0.29 -3.12 16 13 C -0.51 -14.47 8.85 -34.44 -0.30 -14.77 16 14 H 0.08 2.32 7.59 -52.48 -0.40 1.92 16 15 C 0.08 2.48 5.46 -17.82 -0.10 2.39 16 16 N -0.89 -27.72 13.96 55.43 0.77 -26.95 16 17 Si 0.88 22.45 23.92 -169.99 -4.07 18.38 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 20 H -0.22 -5.28 3.30 56.52 0.19 -5.09 16 21 O -0.35 -8.05 5.63 -35.23 -0.20 -8.24 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.75 4.17 -51.93 -0.22 1.54 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.62 6.29 -51.93 -0.33 0.29 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.20 8.06 -51.93 -0.42 0.79 16 34 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 35 H 0.07 1.48 7.40 -51.92 -0.38 1.09 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 1.04 3.02 -51.93 -0.16 0.88 16 38 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -30.08 286.75 -6.61 -36.69 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.06 Total: -0.12 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -0.39 Total: -24.09 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.20 Total: -8.24 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.07 Total: 18.38 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.08 -6.61 -36.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394414861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.881 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds