Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46817 * 2 1 4 4 H 1.08998 * 109.47756 * 54.99742 * 3 2 1 5 5 C 1.53002 * 109.47076 * 294.99482 * 3 2 1 6 6 C 1.53000 * 109.47130 * 175.00121 * 3 2 1 7 7 C 1.52997 * 109.47412 * 185.44792 * 6 3 2 8 8 H 1.09001 * 109.48389 * 54.62343 * 7 6 3 9 9 C 1.53094 * 109.48616 * 174.65050 * 7 6 3 10 10 C 1.53169 * 109.16419 * 177.58020 * 9 7 6 11 11 C 1.53182 * 109.04661 * 303.03344 * 10 9 7 12 12 C 1.53089 * 109.16084 * 56.97564 * 11 10 9 13 13 H 1.08999 * 109.48227 * 182.40451 * 12 11 10 14 14 C 1.50708 * 109.49154 * 62.38047 * 12 11 10 15 15 H 1.08000 * 119.99897 * 275.27135 * 14 12 11 16 16 C 1.37880 * 119.99712 * 95.26121 * 14 12 11 17 17 N 1.31518 * 119.99840 * 184.81485 * 16 14 12 18 18 Si 1.86799 * 120.00062 * 4.82162 * 16 14 12 19 19 H 1.48499 * 109.47073 * 85.07138 * 18 16 14 20 20 H 1.48501 * 109.46727 * 205.06852 * 18 16 14 21 21 H 1.48495 * 109.47032 * 325.06795 * 18 16 14 22 22 O 1.42902 * 109.41874 * 302.39115 * 12 11 10 23 23 H 1.08995 * 109.46840 * 299.99907 * 1 2 3 24 24 H 1.08993 * 109.47081 * 60.00462 * 1 2 3 25 25 H 1.09004 * 109.46725 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47258 * 239.99754 * 2 1 3 27 27 H 1.09002 * 109.47337 * 119.99580 * 2 1 3 28 28 H 1.09000 * 109.47645 * 291.93282 * 5 3 2 29 29 H 1.09005 * 109.46553 * 51.93208 * 5 3 2 30 30 H 1.08999 * 109.47060 * 171.92626 * 5 3 2 31 31 H 1.09002 * 109.47130 * 305.44354 * 6 3 2 32 32 H 1.08995 * 109.47433 * 65.44639 * 6 3 2 33 33 H 1.09001 * 109.51716 * 297.49618 * 9 7 6 34 34 H 1.08999 * 109.52078 * 57.67784 * 9 7 6 35 35 H 1.09000 * 109.54468 * 183.16237 * 10 9 7 36 36 H 1.09002 * 109.61164 * 62.94687 * 10 9 7 37 37 H 1.09001 * 109.52312 * 297.06846 * 11 10 9 38 38 H 1.09005 * 109.56962 * 176.91394 * 11 10 9 39 39 H 0.96994 * 120.00268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0635 2.8844 0.2623 8 1 3.5531 3.3684 1.0949 9 6 5.5723 2.8798 0.5216 10 6 6.0739 4.3251 0.5969 11 6 5.7095 5.0491 -0.7029 12 6 4.1953 4.9699 -0.9146 13 1 3.9350 5.4464 -1.8597 14 6 3.4920 5.6770 0.2152 15 1 3.2901 5.1530 1.1377 16 6 3.1064 6.9929 0.0710 17 7 2.5785 7.6386 1.0879 18 14 3.3336 7.8585 -1.5686 19 1 2.1698 7.5717 -2.4453 20 1 3.4359 9.3231 -1.3451 21 1 4.5757 7.3691 -2.2188 22 8 3.7908 3.5996 -0.9445 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1821 1.6778 -2.1367 29 1 0.5645 1.9997 -1.4674 30 1 1.8706 3.1892 -1.2495 31 1 3.8574 0.8735 1.0069 32 1 4.0032 0.9909 -0.7632 33 1 5.7783 2.3729 1.4643 34 1 6.0799 2.3600 -0.2910 35 1 7.1563 4.3291 0.7253 36 1 5.6048 4.8317 1.4403 37 1 6.2197 4.5732 -1.5404 38 1 6.0140 6.0936 -0.6368 39 1 2.3069 8.5642 0.9865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394439291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = -83.333353 kcal Electronic energy + Delta-G solvation = -16904.807885 eV Core-core repulsion = 14425.050984 eV Total energy + Delta-G solvation = -2479.756901 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.79780 -36.27512 -32.83438 -32.53342 -31.45038 -29.12428 -27.01636 -25.38043 -23.67478 -22.08233 -20.99460 -19.62922 -18.99451 -16.43376 -15.57067 -15.39727 -14.38692 -14.28647 -13.97416 -13.70030 -13.08558 -12.92751 -12.57511 -12.52319 -12.12959 -11.89703 -11.65270 -11.45448 -11.03396 -10.95855 -10.84560 -10.65954 -10.35208 -10.17045 -10.13417 -10.04841 -9.99280 -9.70110 -9.51127 -8.95103 -8.47265 -7.94481 -6.13111 -4.13552 3.25833 3.33787 3.35185 4.36427 4.81159 5.05486 5.23278 5.31126 5.34115 5.60709 5.65619 5.71830 5.79389 5.91716 5.97446 6.03493 6.11577 6.19203 6.24351 6.30130 6.32710 6.39131 6.40346 6.48483 6.56499 6.59472 6.73211 6.84105 6.92792 6.95597 7.02115 7.12257 7.16065 7.35312 7.62890 8.43621 8.53034 8.93524 9.50046 10.99528 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.009053 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.681088 B = 3092.278159 C = 3654.297308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.067 0.933 5 C -0.148 4.148 6 C -0.105 4.105 7 C 0.097 3.903 8 H 0.066 0.934 9 C -0.142 4.142 10 C -0.109 4.109 11 C -0.140 4.140 12 C 0.180 3.820 13 H 0.056 0.944 14 C -0.534 4.534 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.895 5.895 18 Si 0.872 3.128 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.265 1.265 22 O -0.378 6.378 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.057 0.943 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -11.214 -2.397 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.205 4.205 6 C -0.142 4.142 7 C 0.039 3.961 8 H 0.083 0.917 9 C -0.180 4.180 10 C -0.146 4.146 11 C -0.178 4.178 12 C 0.123 3.877 13 H 0.073 0.927 14 C -0.571 4.571 15 H 0.099 0.901 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.700 3.300 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.190 1.190 22 O -0.298 6.298 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.280 -11.117 -2.497 11.466 hybrid contribution 0.300 0.794 -0.541 1.007 sum 1.580 -10.323 -3.038 10.876 Atomic orbital electron populations 1.21825 0.96361 1.00702 1.02129 1.21594 0.95601 0.97377 1.01085 1.21077 0.95046 0.94747 0.99560 0.91454 1.22015 0.98706 1.04067 0.95690 1.21688 0.95520 0.95851 1.01180 1.21795 0.92908 0.91224 0.90148 0.91660 1.22129 0.97937 0.97533 1.00420 1.21400 0.98405 0.95049 0.99769 1.22264 1.00092 0.99508 0.95955 1.20184 0.90036 0.80187 0.97280 0.92662 1.21454 1.37468 0.96889 1.01315 0.90148 1.24975 0.94218 0.97219 0.96281 1.69907 1.41926 1.11040 1.30373 0.86943 0.79380 0.78753 0.84962 1.19879 1.21407 1.18999 1.87837 1.82335 1.24199 1.35408 0.92865 0.92357 0.93551 0.92526 0.92732 0.93827 0.94384 0.88972 0.91933 0.92106 0.92642 0.92695 0.94031 0.90696 0.94577 0.92387 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.68 37.16 0.36 -1.47 16 2 C -0.12 -1.53 5.40 -26.73 -0.14 -1.67 16 3 C -0.09 -1.35 2.38 -90.62 -0.22 -1.56 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.15 -2.52 8.19 37.16 0.30 -2.22 16 6 C -0.10 -1.67 4.51 -26.73 -0.12 -1.79 16 7 C 0.10 1.88 2.34 -26.68 -0.06 1.81 16 8 H 0.07 1.43 6.19 -51.93 -0.32 1.10 16 9 C -0.14 -2.52 5.42 -26.60 -0.14 -2.66 16 10 C -0.11 -2.12 5.78 -26.55 -0.15 -2.27 16 11 C -0.14 -3.00 5.63 -26.59 -0.15 -3.14 16 12 C 0.18 4.28 2.96 -27.83 -0.08 4.20 16 13 H 0.06 1.35 5.28 -51.93 -0.27 1.08 16 14 C -0.53 -14.48 7.60 -34.44 -0.26 -14.74 16 15 H 0.08 2.36 6.30 -52.49 -0.33 2.03 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 18 Si 0.87 21.15 27.00 -169.99 -4.59 16.56 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.15 6.81 56.52 0.38 -5.76 16 22 O -0.38 -8.30 6.95 -35.23 -0.24 -8.54 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 29 H 0.04 0.59 6.23 -51.93 -0.32 0.27 16 30 H 0.09 1.90 5.84 -51.93 -0.30 1.59 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.62 7.37 -51.93 -0.38 1.23 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -28.22 292.02 -7.34 -35.56 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.91 Total: 1.44 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -0.77 Total: -23.50 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.24 Total: -8.54 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.22 -7.34 -35.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394439291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.772 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds