Wall clock time and date at job start Mon Mar 30 2020 02:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46817 * 2 1 4 4 H 1.08998 * 109.47756 * 54.99742 * 3 2 1 5 5 C 1.53002 * 109.47076 * 294.99482 * 3 2 1 6 6 C 1.53000 * 109.47130 * 175.00121 * 3 2 1 7 7 C 1.52997 * 109.47412 * 185.44792 * 6 3 2 8 8 H 1.09001 * 109.48389 * 54.62343 * 7 6 3 9 9 C 1.53094 * 109.48616 * 174.65050 * 7 6 3 10 10 C 1.53169 * 109.16419 * 177.58020 * 9 7 6 11 11 C 1.53182 * 109.04661 * 303.03344 * 10 9 7 12 12 C 1.53089 * 109.16084 * 56.97564 * 11 10 9 13 13 H 1.08999 * 109.48227 * 182.40451 * 12 11 10 14 14 C 1.50708 * 109.49154 * 62.38047 * 12 11 10 15 15 H 1.08000 * 119.99897 * 275.27135 * 14 12 11 16 16 C 1.37880 * 119.99712 * 95.26121 * 14 12 11 17 17 N 1.31518 * 119.99840 * 184.81485 * 16 14 12 18 18 Si 1.86799 * 120.00062 * 4.82162 * 16 14 12 19 19 H 1.48499 * 109.47073 * 85.07138 * 18 16 14 20 20 H 1.48501 * 109.46727 * 205.06852 * 18 16 14 21 21 H 1.48495 * 109.47032 * 325.06795 * 18 16 14 22 22 O 1.42902 * 109.41874 * 302.39115 * 12 11 10 23 23 H 1.08995 * 109.46840 * 299.99907 * 1 2 3 24 24 H 1.08993 * 109.47081 * 60.00462 * 1 2 3 25 25 H 1.09004 * 109.46725 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47258 * 239.99754 * 2 1 3 27 27 H 1.09002 * 109.47337 * 119.99580 * 2 1 3 28 28 H 1.09000 * 109.47645 * 291.93282 * 5 3 2 29 29 H 1.09005 * 109.46553 * 51.93208 * 5 3 2 30 30 H 1.08999 * 109.47060 * 171.92626 * 5 3 2 31 31 H 1.09002 * 109.47130 * 305.44354 * 6 3 2 32 32 H 1.08995 * 109.47433 * 65.44639 * 6 3 2 33 33 H 1.09001 * 109.51716 * 297.49618 * 9 7 6 34 34 H 1.08999 * 109.52078 * 57.67784 * 9 7 6 35 35 H 1.09000 * 109.54468 * 183.16237 * 10 9 7 36 36 H 1.09002 * 109.61164 * 62.94687 * 10 9 7 37 37 H 1.09001 * 109.52312 * 297.06846 * 11 10 9 38 38 H 1.09005 * 109.56962 * 176.91394 * 11 10 9 39 39 H 0.96994 * 120.00268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0635 2.8844 0.2623 8 1 3.5531 3.3684 1.0949 9 6 5.5723 2.8798 0.5216 10 6 6.0739 4.3251 0.5969 11 6 5.7095 5.0491 -0.7029 12 6 4.1953 4.9699 -0.9146 13 1 3.9350 5.4464 -1.8597 14 6 3.4920 5.6770 0.2152 15 1 3.2901 5.1530 1.1377 16 6 3.1064 6.9929 0.0710 17 7 2.5785 7.6386 1.0879 18 14 3.3336 7.8585 -1.5686 19 1 2.1698 7.5717 -2.4453 20 1 3.4359 9.3231 -1.3451 21 1 4.5757 7.3691 -2.2188 22 8 3.7908 3.5996 -0.9445 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.1821 1.6778 -2.1367 29 1 0.5645 1.9997 -1.4674 30 1 1.8706 3.1892 -1.2495 31 1 3.8574 0.8735 1.0069 32 1 4.0032 0.9909 -0.7632 33 1 5.7783 2.3729 1.4643 34 1 6.0799 2.3600 -0.2910 35 1 7.1563 4.3291 0.7253 36 1 5.6048 4.8317 1.4403 37 1 6.2197 4.5732 -1.5404 38 1 6.0140 6.0936 -0.6368 39 1 2.3069 8.5642 0.9865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394439291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:03 Heat of formation + Delta-G solvation = -98.743847 kcal Electronic energy + Delta-G solvation = -16905.476134 eV Core-core repulsion = 14425.050984 eV Total energy + Delta-G solvation = -2480.425150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42499 -37.58712 -34.80758 -34.17312 -33.03323 -30.51789 -28.66888 -27.06786 -24.99010 -23.81653 -22.41816 -21.21651 -20.48581 -18.38262 -17.35997 -16.99204 -15.86981 -15.64286 -15.58648 -15.23961 -14.62692 -14.46592 -14.32250 -14.13321 -13.47754 -13.36588 -13.18647 -12.87106 -12.69065 -12.36073 -12.31216 -12.09224 -12.00639 -11.75885 -11.67064 -11.64043 -11.34561 -11.25088 -11.12593 -10.83888 -10.41460 -9.69420 -8.30646 -6.34769 1.32262 1.34124 1.43161 2.31529 2.96090 3.40526 3.80121 4.07798 4.13466 4.21807 4.24461 4.30946 4.49768 4.56674 4.64087 4.69728 4.78100 4.80663 4.88970 4.97550 4.99576 5.02810 5.10097 5.18816 5.26012 5.26516 5.31986 5.34237 5.35688 5.43027 5.46403 5.54132 5.63673 5.71255 5.86106 6.28808 6.61368 6.87313 7.32495 8.85471 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.009053 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.681088 B = 3092.278159 C = 3654.297308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.087 4.087 4 H 0.043 0.957 5 C -0.142 4.142 6 C -0.097 4.097 7 C 0.091 3.909 8 H 0.026 0.974 9 C -0.137 4.137 10 C -0.109 4.109 11 C -0.139 4.139 12 C 0.178 3.822 13 H 0.052 0.948 14 C -0.528 4.528 15 H 0.042 0.958 16 C 0.017 3.983 17 N -0.944 5.944 18 Si 0.934 3.066 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.244 1.244 22 O -0.382 6.382 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -13.290 -3.885 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.106 4.106 4 H 0.062 0.938 5 C -0.199 4.199 6 C -0.134 4.134 7 C 0.033 3.967 8 H 0.044 0.956 9 C -0.174 4.174 10 C -0.146 4.146 11 C -0.177 4.177 12 C 0.121 3.879 13 H 0.069 0.931 14 C -0.566 4.566 15 H 0.060 0.940 16 C -0.181 4.181 17 N -0.584 5.584 18 Si 0.758 3.242 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.168 1.168 22 O -0.302 6.302 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.588 -13.215 -3.989 14.045 hybrid contribution -0.144 1.369 0.004 1.376 sum 2.444 -11.846 -3.985 12.735 Atomic orbital electron populations 1.21830 0.95877 1.01888 1.01499 1.21528 0.96019 0.95002 1.02345 1.21073 0.95204 0.96563 0.97737 0.93845 1.21916 0.99598 1.01544 0.96882 1.21678 0.95384 0.93465 1.02909 1.21978 0.94288 0.92564 0.87895 0.95598 1.22101 0.96246 0.96610 1.02457 1.21386 1.00042 0.95790 0.97418 1.22191 0.98040 0.99614 0.97897 1.20096 0.91469 0.80936 0.95389 0.93055 1.21655 1.37030 0.96883 1.01034 0.93982 1.25807 0.94231 0.98167 0.99899 1.70051 1.44080 1.11532 1.32778 0.85946 0.80235 0.77539 0.80498 1.19427 1.21091 1.16766 1.87830 1.82725 1.23073 1.36530 0.93601 0.92957 0.91439 0.91340 0.91291 0.93026 0.93372 0.93039 0.89447 0.90792 0.90279 0.90644 0.91034 0.94099 0.92068 0.93367 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.68 71.98 0.70 -2.68 16 2 C -0.11 -2.58 5.40 30.59 0.17 -2.41 16 3 C -0.09 -2.66 2.38 -10.79 -0.03 -2.68 16 4 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.14 -4.81 8.19 71.98 0.59 -4.22 16 6 C -0.10 -2.88 4.51 30.59 0.14 -2.75 16 7 C 0.09 3.45 2.34 30.62 0.07 3.53 16 8 H 0.03 1.19 6.19 -2.39 -0.01 1.18 16 9 C -0.14 -4.51 5.42 30.68 0.17 -4.34 16 10 C -0.11 -4.10 5.78 30.71 0.18 -3.92 16 11 C -0.14 -5.76 5.63 30.68 0.17 -5.58 16 12 C 0.18 8.49 2.96 29.88 0.09 8.57 16 13 H 0.05 2.47 5.28 -2.39 -0.01 2.46 16 14 C -0.53 -29.81 7.60 25.60 0.19 -29.61 16 15 H 0.04 2.64 6.30 -2.91 -0.02 2.62 16 16 C 0.02 0.96 5.47 84.65 0.46 1.42 16 17 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 18 Si 0.93 44.05 27.00 68.60 1.85 45.90 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.24 -10.59 6.81 99.48 0.68 -9.92 16 22 O -0.38 -16.69 6.95 -148.98 -1.04 -17.73 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.20 6.40 -2.39 -0.02 1.18 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.62 8.12 -2.39 -0.02 1.60 16 29 H 0.05 1.48 6.23 -2.38 -0.01 1.46 16 30 H 0.05 2.17 5.84 -2.39 -0.01 2.15 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.04 8.13 -2.39 -0.02 2.02 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.79 7.37 -2.39 -0.02 1.78 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -63.23 292.02 4.97 -58.26 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.96 Total: 16.68 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 2.90 Total: -44.67 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.30 Total: -58.43 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.04 Total: -17.73 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.85 Total: 45.90 kcal Total: -63.23 4.97 -58.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394439291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.484 kcal (2) G-P(sol) polarization free energy of solvation -63.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds