Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 H 1.09003 * 109.46703 * 55.00133 * 3 2 1 5 5 C 1.53003 * 109.47105 * 295.00307 * 3 2 1 6 6 C 1.52999 * 109.47304 * 174.99930 * 3 2 1 7 7 C 1.53002 * 109.46976 * 185.00191 * 6 3 2 8 8 H 1.09003 * 109.48081 * 304.97565 * 7 6 3 9 9 C 1.53280 * 109.45473 * 184.98514 * 7 6 3 10 10 C 1.53179 * 109.06328 * 182.44699 * 9 7 6 11 11 C 1.53177 * 109.10692 * 56.94222 * 10 9 7 12 12 C 1.53091 * 109.16264 * 302.97408 * 11 10 9 13 13 H 1.09000 * 109.48169 * 177.60517 * 12 11 10 14 14 C 1.50703 * 109.48304 * 297.62472 * 12 11 10 15 15 H 1.07998 * 119.99908 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00041 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99754 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 119.99970 * 0.02562 * 16 14 12 19 19 H 1.48503 * 109.47274 * 90.00186 * 18 16 14 20 20 H 1.48504 * 109.47063 * 210.00054 * 18 16 14 21 21 H 1.48494 * 109.47497 * 330.00095 * 18 16 14 22 22 O 1.42901 * 109.47996 * 65.00173 * 7 6 3 23 23 H 1.09003 * 109.47035 * 300.00315 * 1 2 3 24 24 H 1.09004 * 109.47084 * 59.99721 * 1 2 3 25 25 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46811 * 240.00166 * 2 1 3 27 27 H 1.09004 * 109.47084 * 120.00279 * 2 1 3 28 28 H 1.09001 * 109.46683 * 299.99537 * 5 3 2 29 29 H 1.09001 * 109.46794 * 59.99763 * 5 3 2 30 30 H 1.09000 * 109.46774 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.46825 * 64.99843 * 6 3 2 32 32 H 1.08998 * 109.47090 * 305.00067 * 6 3 2 33 33 H 1.09006 * 109.64318 * 62.53179 * 9 7 6 34 34 H 1.09002 * 109.50809 * 302.28496 * 9 7 6 35 35 H 1.09002 * 109.54484 * 297.03018 * 10 9 7 36 36 H 1.08999 * 109.54222 * 176.85184 * 10 9 7 37 37 H 1.09004 * 109.52253 * 62.88396 * 11 10 9 38 38 H 1.08999 * 109.52129 * 183.00522 * 11 10 9 39 39 H 0.97002 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8849 0.2512 8 1 3.6976 3.4716 -0.5911 9 6 5.5973 2.8954 0.2519 10 6 6.0876 4.3345 0.4392 11 6 5.5007 4.8993 1.7364 12 6 3.9735 4.8109 1.6773 13 1 3.5519 5.1722 2.6153 14 6 3.4647 5.6570 0.5388 15 1 4.1605 6.2030 -0.0811 16 6 2.1112 5.7333 0.2879 17 7 1.6673 6.4713 -0.7060 18 14 0.9079 4.7885 1.3597 19 1 0.4915 5.6382 2.5042 20 1 -0.2858 4.4196 0.5570 21 1 1.5612 3.5565 1.8699 22 8 3.5840 3.4514 1.4720 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 2.0699 1.5875 -2.1491 29 1 0.5489 2.1253 -1.3968 30 1 1.9983 3.1543 -1.3071 31 1 4.0029 0.9835 -0.7596 32 1 3.8570 0.8800 1.0113 33 1 5.9668 2.5053 -0.6965 34 1 5.9652 2.2758 1.0697 35 1 5.7617 4.9435 -0.4040 36 1 7.1761 4.3442 0.4969 37 1 5.8667 4.3201 2.5843 38 1 5.8021 5.9407 1.8495 39 1 0.7149 6.5253 -0.8823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394439294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = -79.429076 kcal Electronic energy + Delta-G solvation = -17339.778161 eV Core-core repulsion = 14860.190562 eV Total energy + Delta-G solvation = -2479.587599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.71461 -36.29072 -32.66170 -32.49116 -31.47252 -29.15458 -26.77071 -25.49764 -23.79330 -22.14538 -20.92419 -19.29207 -18.81792 -16.70685 -15.41632 -14.99507 -14.53169 -14.33802 -14.01685 -13.70820 -13.24957 -12.87915 -12.45325 -12.36389 -12.07006 -11.83003 -11.61931 -11.55923 -11.19463 -10.97247 -10.79829 -10.44193 -10.37449 -10.22003 -10.10817 -9.95501 -9.77215 -9.43940 -9.40781 -8.64104 -8.54976 -7.81177 -6.07159 -4.14616 3.40150 3.49970 3.72631 4.56076 4.95481 5.11025 5.27453 5.34460 5.44037 5.65529 5.72000 5.72509 5.83401 5.92239 5.94131 6.05179 6.15821 6.17700 6.28277 6.31397 6.33317 6.41123 6.43119 6.46150 6.49545 6.61500 6.72161 6.85662 6.90437 6.96466 6.99838 7.05386 7.23917 7.41259 7.70419 8.30330 8.76574 8.96197 9.58264 11.03180 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.013939 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.964307 B = 2008.199216 C = 2802.886138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.098 4.098 4 H 0.084 0.916 5 C -0.152 4.152 6 C -0.103 4.103 7 C 0.095 3.905 8 H 0.076 0.924 9 C -0.140 4.140 10 C -0.110 4.110 11 C -0.130 4.130 12 C 0.174 3.826 13 H 0.056 0.944 14 C -0.547 4.547 15 H 0.073 0.927 16 C 0.087 3.913 17 N -0.894 5.894 18 Si 0.852 3.148 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.208 1.208 22 O -0.388 6.388 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -10.658 1.150 10.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.116 4.116 4 H 0.102 0.898 5 C -0.210 4.210 6 C -0.140 4.140 7 C 0.037 3.963 8 H 0.094 0.906 9 C -0.178 4.178 10 C -0.148 4.148 11 C -0.168 4.168 12 C 0.118 3.882 13 H 0.074 0.926 14 C -0.584 4.584 15 H 0.091 0.909 16 C -0.117 4.117 17 N -0.531 5.531 18 Si 0.680 3.320 19 H -0.219 1.219 20 H -0.220 1.220 21 H -0.131 1.131 22 O -0.309 6.309 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.061 -10.715 1.185 10.975 hybrid contribution -0.557 -0.059 0.232 0.607 sum 1.503 -10.774 1.417 10.970 Atomic orbital electron populations 1.21827 0.96500 1.00704 1.02077 1.21582 0.95491 0.97275 1.01123 1.21269 0.95784 0.95062 0.99501 0.89785 1.21951 1.00527 1.02062 0.96412 1.21616 0.95245 0.96391 1.00759 1.21810 0.90923 0.92681 0.90887 0.90636 1.22138 0.98211 0.97164 1.00315 1.21445 0.97627 0.96204 0.99501 1.21957 0.98916 0.99760 0.96189 1.20091 0.90226 0.80589 0.97288 0.92630 1.21421 0.93015 1.29011 1.14954 0.90859 1.24928 0.98487 0.93821 0.94461 1.69957 1.14534 1.39166 1.29465 0.87385 0.80189 0.83605 0.80845 1.21870 1.21963 1.13079 1.88000 1.74594 1.29109 1.39183 0.92914 0.92526 0.93427 0.92578 0.92519 0.93520 0.93426 0.90883 0.91994 0.92374 0.92757 0.92915 0.90948 0.94079 0.94009 0.92316 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.15 0.36 -1.72 16 2 C -0.12 -1.67 5.40 -26.73 -0.14 -1.81 16 3 C -0.10 -1.71 2.34 -90.62 -0.21 -1.92 16 4 H 0.08 1.70 5.13 -51.93 -0.27 1.43 16 5 C -0.15 -2.76 8.71 37.16 0.32 -2.44 16 6 C -0.10 -1.76 4.39 -26.73 -0.12 -1.88 16 7 C 0.09 1.92 2.24 -26.59 -0.06 1.86 16 8 H 0.08 1.75 5.29 -51.93 -0.27 1.48 16 9 C -0.14 -2.53 5.44 -26.49 -0.14 -2.68 16 10 C -0.11 -2.10 5.77 -26.55 -0.15 -2.25 16 11 C -0.13 -2.65 5.59 -26.59 -0.15 -2.80 16 12 C 0.17 4.11 2.65 -27.83 -0.07 4.04 16 13 H 0.06 1.34 7.57 -51.93 -0.39 0.94 16 14 C -0.55 -14.86 7.17 -34.44 -0.25 -15.11 16 15 H 0.07 2.16 7.11 -52.49 -0.37 1.79 16 16 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 17 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.85 21.39 26.11 -169.99 -4.44 16.96 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.21 -4.97 3.83 56.52 0.22 -4.75 16 22 O -0.39 -8.85 6.59 -35.23 -0.23 -9.08 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16 30 H 0.07 1.57 6.46 -51.93 -0.34 1.24 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.52 6.85 -51.93 -0.36 1.17 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -28.72 287.10 -7.36 -36.08 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.07 Total: 2.07 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -0.71 Total: -24.35 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.77 Total: -26.00 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.23 Total: -9.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.44 Total: 16.96 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.72 -7.36 -36.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394439294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.348 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds