Wall clock time and date at job start Mon Mar 30 2020 02:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 H 1.09003 * 109.46703 * 55.00133 * 3 2 1 5 5 C 1.53003 * 109.47105 * 295.00307 * 3 2 1 6 6 C 1.52999 * 109.47304 * 174.99930 * 3 2 1 7 7 C 1.53002 * 109.46976 * 185.00191 * 6 3 2 8 8 H 1.09003 * 109.48081 * 304.97565 * 7 6 3 9 9 C 1.53280 * 109.45473 * 184.98514 * 7 6 3 10 10 C 1.53179 * 109.06328 * 182.44699 * 9 7 6 11 11 C 1.53177 * 109.10692 * 56.94222 * 10 9 7 12 12 C 1.53091 * 109.16264 * 302.97408 * 11 10 9 13 13 H 1.09000 * 109.48169 * 177.60517 * 12 11 10 14 14 C 1.50703 * 109.48304 * 297.62472 * 12 11 10 15 15 H 1.07998 * 119.99908 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00041 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99754 * 180.02562 * 16 14 12 18 18 Si 1.86799 * 119.99970 * 0.02562 * 16 14 12 19 19 H 1.48503 * 109.47274 * 90.00186 * 18 16 14 20 20 H 1.48504 * 109.47063 * 210.00054 * 18 16 14 21 21 H 1.48494 * 109.47497 * 330.00095 * 18 16 14 22 22 O 1.42901 * 109.47996 * 65.00173 * 7 6 3 23 23 H 1.09003 * 109.47035 * 300.00315 * 1 2 3 24 24 H 1.09004 * 109.47084 * 59.99721 * 1 2 3 25 25 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46811 * 240.00166 * 2 1 3 27 27 H 1.09004 * 109.47084 * 120.00279 * 2 1 3 28 28 H 1.09001 * 109.46683 * 299.99537 * 5 3 2 29 29 H 1.09001 * 109.46794 * 59.99763 * 5 3 2 30 30 H 1.09000 * 109.46774 * 179.97438 * 5 3 2 31 31 H 1.08997 * 109.46825 * 64.99843 * 6 3 2 32 32 H 1.08998 * 109.47090 * 305.00067 * 6 3 2 33 33 H 1.09006 * 109.64318 * 62.53179 * 9 7 6 34 34 H 1.09002 * 109.50809 * 302.28496 * 9 7 6 35 35 H 1.09002 * 109.54484 * 297.03018 * 10 9 7 36 36 H 1.08999 * 109.54222 * 176.85184 * 10 9 7 37 37 H 1.09004 * 109.52253 * 62.88396 * 11 10 9 38 38 H 1.08999 * 109.52129 * 183.00522 * 11 10 9 39 39 H 0.97002 * 119.99847 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8849 0.2512 8 1 3.6976 3.4716 -0.5911 9 6 5.5973 2.8954 0.2519 10 6 6.0876 4.3345 0.4392 11 6 5.5007 4.8993 1.7364 12 6 3.9735 4.8109 1.6773 13 1 3.5519 5.1722 2.6153 14 6 3.4647 5.6570 0.5388 15 1 4.1605 6.2030 -0.0811 16 6 2.1112 5.7333 0.2879 17 7 1.6673 6.4713 -0.7060 18 14 0.9079 4.7885 1.3597 19 1 0.4915 5.6382 2.5042 20 1 -0.2858 4.4196 0.5570 21 1 1.5612 3.5565 1.8699 22 8 3.5840 3.4514 1.4720 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 2.0699 1.5875 -2.1491 29 1 0.5489 2.1253 -1.3968 30 1 1.9983 3.1543 -1.3071 31 1 4.0029 0.9835 -0.7596 32 1 3.8570 0.8800 1.0113 33 1 5.9668 2.5053 -0.6965 34 1 5.9652 2.2758 1.0697 35 1 5.7617 4.9435 -0.4040 36 1 7.1761 4.3442 0.4969 37 1 5.8667 4.3201 2.5843 38 1 5.8021 5.9407 1.8495 39 1 0.7149 6.5253 -0.8823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394439294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:08 Heat of formation + Delta-G solvation = -95.587885 kcal Electronic energy + Delta-G solvation = -17340.478860 eV Core-core repulsion = 14860.190562 eV Total energy + Delta-G solvation = -2480.288297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.36944 -37.66599 -34.66142 -34.16454 -33.06534 -30.59285 -28.43075 -27.23324 -25.20146 -23.82413 -22.38521 -20.66532 -20.57774 -18.71150 -17.14879 -16.62230 -16.09307 -15.89495 -15.67661 -15.36271 -14.75177 -14.37902 -14.21081 -13.96138 -13.57052 -13.43313 -13.02892 -12.86563 -12.77933 -12.69554 -12.29016 -12.06802 -11.90372 -11.83615 -11.63749 -11.56569 -11.27101 -11.13701 -11.00100 -10.68193 -10.44860 -9.59793 -8.29646 -6.38623 1.34662 1.40940 1.68896 2.43795 3.04287 3.45748 3.81118 4.06091 4.12798 4.25206 4.26898 4.28571 4.47599 4.54173 4.63895 4.66116 4.77611 4.78900 4.90541 4.94712 4.98480 5.02305 5.08380 5.11929 5.19714 5.24061 5.28556 5.31767 5.38451 5.45724 5.50121 5.57473 5.64907 5.69695 5.75584 6.16246 6.69498 6.94729 7.37790 8.84187 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.013939 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.964307 B = 2008.199216 C = 2802.886138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.099 4.099 4 H 0.053 0.947 5 C -0.147 4.147 6 C -0.097 4.097 7 C 0.087 3.913 8 H 0.037 0.963 9 C -0.135 4.135 10 C -0.110 4.110 11 C -0.128 4.128 12 C 0.172 3.828 13 H 0.052 0.948 14 C -0.537 4.537 15 H 0.037 0.963 16 C 0.041 3.959 17 N -0.939 5.939 18 Si 0.904 3.096 19 H -0.295 1.295 20 H -0.298 1.298 21 H -0.188 1.188 22 O -0.395 6.395 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -13.621 2.054 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.118 4.118 4 H 0.072 0.928 5 C -0.205 4.205 6 C -0.134 4.134 7 C 0.030 3.970 8 H 0.055 0.945 9 C -0.173 4.173 10 C -0.148 4.148 11 C -0.166 4.166 12 C 0.116 3.884 13 H 0.070 0.930 14 C -0.575 4.575 15 H 0.056 0.944 16 C -0.158 4.158 17 N -0.579 5.579 18 Si 0.730 3.270 19 H -0.222 1.222 20 H -0.225 1.225 21 H -0.110 1.110 22 O -0.315 6.315 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.067 -13.688 2.098 14.183 hybrid contribution -0.808 0.903 -0.115 1.217 sum 2.259 -12.785 1.983 13.134 Atomic orbital electron populations 1.21847 0.96212 1.02038 1.01213 1.21529 0.95746 0.94853 1.02636 1.21252 0.96128 0.96898 0.97483 0.92832 1.21889 1.00505 0.99928 0.98141 1.21620 0.94943 0.94226 1.02592 1.21983 0.92799 0.93895 0.88348 0.94465 1.22109 0.96183 0.96684 1.02331 1.21432 0.99501 0.96425 0.97418 1.21910 0.96358 1.00359 0.97964 1.20006 0.92628 0.80536 0.95245 0.93045 1.21625 0.92290 1.28446 1.15141 0.94438 1.25583 1.00190 0.94611 0.95418 1.70075 1.14732 1.41488 1.31604 0.86603 0.78150 0.83173 0.79052 1.22229 1.22512 1.10972 1.87932 1.75316 1.27961 1.40289 0.94060 0.93195 0.90992 0.90710 0.91263 0.91264 0.93488 0.95151 0.89467 0.90884 0.90605 0.90832 0.94238 0.90916 0.91434 0.92602 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.67 71.98 0.70 -3.11 16 2 C -0.11 -2.76 5.40 30.59 0.17 -2.59 16 3 C -0.10 -3.26 2.34 -10.79 -0.03 -3.29 16 4 H 0.05 2.09 5.13 -2.39 -0.01 2.08 16 5 C -0.15 -5.25 8.71 71.98 0.63 -4.63 16 6 C -0.10 -3.02 4.39 30.59 0.13 -2.88 16 7 C 0.09 3.41 2.24 30.69 0.07 3.48 16 8 H 0.04 1.76 5.29 -2.39 -0.01 1.75 16 9 C -0.14 -4.48 5.44 30.75 0.17 -4.31 16 10 C -0.11 -4.00 5.77 30.71 0.18 -3.83 16 11 C -0.13 -5.01 5.59 30.68 0.17 -4.84 16 12 C 0.17 8.08 2.65 29.88 0.08 8.16 16 13 H 0.05 2.45 7.57 -2.39 -0.02 2.43 16 14 C -0.54 -30.18 7.17 25.60 0.18 -29.99 16 15 H 0.04 2.33 7.11 -2.91 -0.02 2.31 16 16 C 0.04 2.40 5.47 84.65 0.46 2.86 16 17 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 18 Si 0.90 45.37 26.11 68.60 1.79 47.16 16 19 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 20 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 21 H -0.19 -8.77 3.83 99.48 0.38 -8.39 16 22 O -0.39 -17.47 6.59 -148.98 -0.98 -18.45 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.27 6.57 -2.38 -0.02 1.25 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.63 6.56 -2.39 -0.02 1.61 16 30 H 0.03 1.33 6.46 -2.39 -0.02 1.31 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.04 1.67 6.85 -2.39 -0.02 1.66 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -64.08 287.10 4.68 -59.40 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.66 Total: 15.33 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 2.91 Total: -44.96 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.98 Total: -18.45 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.79 Total: 47.16 kcal Total: -64.08 4.68 -59.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394439294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.187 kcal (2) G-P(sol) polarization free energy of solvation -64.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds