Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46721 * 2 1 4 4 H 1.09000 * 109.47420 * 55.00394 * 3 2 1 5 5 C 1.52997 * 109.47339 * 295.00055 * 3 2 1 6 6 C 1.53002 * 109.46935 * 174.99842 * 3 2 1 7 7 C 1.52994 * 109.47522 * 184.99824 * 6 3 2 8 8 H 1.09002 * 109.49458 * 304.97996 * 7 6 3 9 9 C 1.53093 * 109.48571 * 184.94214 * 7 6 3 10 10 C 1.53174 * 109.16375 * 182.41154 * 9 7 6 11 11 C 1.53172 * 109.03844 * 56.98496 * 10 9 7 12 12 C 1.53096 * 109.16237 * 303.01800 * 11 10 9 13 13 H 1.09005 * 109.47867 * 297.62453 * 12 11 10 14 14 C 1.50699 * 109.48331 * 177.59097 * 12 11 10 15 15 H 1.08010 * 119.99587 * 0.05823 * 14 12 11 16 16 C 1.37876 * 120.00345 * 180.02562 * 14 12 11 17 17 N 1.31512 * 119.99422 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00038 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46977 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46657 * 120.00482 * 18 16 14 21 21 H 1.48496 * 109.47083 * 240.00091 * 18 16 14 22 22 O 1.42905 * 109.47665 * 65.00319 * 7 6 3 23 23 H 1.09002 * 109.46988 * 299.99713 * 1 2 3 24 24 H 1.08999 * 109.47261 * 60.00198 * 1 2 3 25 25 H 1.09008 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46988 * 240.00287 * 2 1 3 27 27 H 1.09001 * 109.47058 * 120.00298 * 2 1 3 28 28 H 1.08995 * 109.46975 * 60.00515 * 5 3 2 29 29 H 1.09006 * 109.46885 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.47046 * 299.99728 * 5 3 2 31 31 H 1.09008 * 109.47070 * 64.99902 * 6 3 2 32 32 H 1.08999 * 109.47239 * 305.00632 * 6 3 2 33 33 H 1.09001 * 109.52010 * 302.32061 * 9 7 6 34 34 H 1.09007 * 109.51637 * 62.50584 * 9 7 6 35 35 H 1.09002 * 109.54277 * 176.85322 * 10 9 7 36 36 H 1.09006 * 109.54594 * 297.02146 * 10 9 7 37 37 H 1.08996 * 109.52430 * 183.11632 * 11 10 9 38 38 H 1.08993 * 109.52369 * 62.91915 * 11 10 9 39 39 H 0.97005 * 119.99193 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0645 2.8850 0.2511 8 1 3.6976 3.4718 -0.5910 9 6 5.5953 2.8962 0.2530 10 6 6.0875 4.3347 0.4393 11 6 5.5006 4.8995 1.7365 12 6 3.9733 4.8110 1.6774 13 1 3.6053 5.4230 0.8539 14 6 3.3904 5.3102 2.9743 15 1 4.0433 5.6570 3.7618 16 6 2.0237 5.3250 3.1555 17 7 1.2288 4.9029 2.1966 18 14 1.3012 5.9431 4.7634 19 1 2.3997 6.3577 5.6726 20 1 0.4168 7.1053 4.4942 21 1 0.5129 4.8584 5.4013 22 8 3.5839 3.4515 1.4719 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.5489 2.1253 -1.3968 29 1 1.9988 3.1542 -1.3074 30 1 2.0698 1.5876 -2.1491 31 1 4.0029 0.9836 -0.7596 32 1 3.8570 0.8800 1.0113 33 1 5.9631 2.2765 1.0708 34 1 5.9635 2.5051 -0.6956 35 1 7.1759 4.3431 0.4975 36 1 5.7629 4.9434 -0.4048 37 1 5.8009 5.9412 1.8489 38 1 5.8664 4.3204 2.5842 39 1 0.2672 4.9129 2.3242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394439296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -88.221233 kcal Electronic energy + Delta-G solvation = -16822.961522 eV Core-core repulsion = 14342.992666 eV Total energy + Delta-G solvation = -2479.968855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.40870 -36.13335 -32.92247 -32.31009 -31.16611 -29.04174 -26.76119 -25.27476 -23.72227 -22.01571 -20.67423 -19.18855 -19.12653 -16.52388 -15.15093 -14.80640 -14.51390 -14.28714 -14.18005 -13.58011 -13.18100 -12.74291 -12.62176 -12.21453 -11.89452 -11.67918 -11.50301 -11.34406 -10.94208 -10.87192 -10.79163 -10.51709 -10.32805 -10.28711 -10.12731 -10.03149 -9.87724 -9.63770 -9.22944 -8.77317 -8.42330 -7.74884 -5.96249 -4.07586 3.32079 3.40154 3.43918 4.45447 5.03400 5.18540 5.37812 5.45234 5.54958 5.65334 5.68071 5.74304 5.90037 5.95221 5.98038 6.10441 6.15827 6.20497 6.29767 6.35328 6.39215 6.42235 6.45592 6.51227 6.55280 6.65651 6.76624 6.87903 6.90961 6.96834 7.00261 7.07375 7.26713 7.58659 7.94758 8.35596 8.85519 9.23545 9.62231 11.11013 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.010882 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.785050 B = 2572.412178 C = 3761.792197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.091 4.091 4 H 0.096 0.904 5 C -0.140 4.140 6 C -0.098 4.098 7 C 0.083 3.917 8 H 0.042 0.958 9 C -0.146 4.146 10 C -0.120 4.120 11 C -0.144 4.144 12 C 0.220 3.780 13 H 0.011 0.989 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.079 3.921 17 N -0.857 5.857 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 O -0.350 6.350 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -6.468 -5.835 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.114 0.886 5 C -0.198 4.198 6 C -0.136 4.136 7 C 0.024 3.976 8 H 0.059 0.941 9 C -0.184 4.184 10 C -0.158 4.158 11 C -0.182 4.182 12 C 0.164 3.836 13 H 0.028 0.972 14 C -0.563 4.563 15 H 0.080 0.920 16 C -0.127 4.127 17 N -0.493 5.493 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 O -0.269 6.269 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.360 -6.597 -5.759 9.070 hybrid contribution -0.197 0.425 0.622 0.779 sum 2.163 -6.172 -5.137 8.316 Atomic orbital electron populations 1.21803 0.96418 1.00472 1.02169 1.21571 0.95583 0.97443 1.00829 1.21101 0.95313 0.94843 0.99648 0.88605 1.21830 1.00539 1.00919 0.96472 1.21542 0.95637 0.95911 1.00487 1.21860 0.90787 0.93906 0.91047 0.94054 1.22207 0.98544 0.97100 1.00581 1.21604 0.98839 0.96232 0.99095 1.22255 1.00582 0.99615 0.95723 1.19646 0.87044 0.80356 0.96506 0.97156 1.21036 0.91610 1.42444 1.01226 0.91978 1.25037 0.97297 0.94101 0.96237 1.70050 1.03318 1.44121 1.31795 0.86617 0.79201 0.78432 0.84179 1.19718 1.21017 1.20903 1.88329 1.74186 1.28966 1.35396 0.92511 0.92742 0.93737 0.93051 0.92547 0.93232 0.92195 0.94221 0.92673 0.92125 0.92085 0.92975 0.93428 0.92866 0.92708 0.92636 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.12 -1.74 5.40 -26.73 -0.14 -1.88 16 3 C -0.09 -1.62 2.34 -90.62 -0.21 -1.83 16 4 H 0.10 2.14 7.69 -51.93 -0.40 1.74 16 5 C -0.14 -2.35 8.71 37.16 0.32 -2.03 16 6 C -0.10 -1.74 4.39 -26.73 -0.12 -1.86 16 7 C 0.08 1.70 2.51 -26.69 -0.07 1.63 16 8 H 0.04 0.88 6.35 -51.93 -0.33 0.55 16 9 C -0.15 -2.63 5.42 -26.59 -0.14 -2.78 16 10 C -0.12 -2.20 6.03 -26.55 -0.16 -2.36 16 11 C -0.14 -3.13 5.36 -26.59 -0.14 -3.27 16 12 C 0.22 5.74 2.50 -27.83 -0.07 5.67 16 13 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 14 C -0.53 -14.90 8.79 -34.44 -0.30 -15.20 16 15 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -24.89 12.84 55.43 0.71 -24.18 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 O -0.35 -8.94 8.89 -35.23 -0.31 -9.26 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.73 6.56 -51.93 -0.34 0.39 16 25 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 29 H 0.06 1.12 6.46 -51.93 -0.34 0.79 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -28.99 302.78 -8.04 -37.03 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.21 Total: -1.07 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -0.77 Total: -23.53 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.71 Total: -24.18 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.31 Total: -9.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.99 -8.04 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394439296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.194 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds