Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46721 * 2 1 4 4 H 1.09000 * 109.47420 * 55.00394 * 3 2 1 5 5 C 1.52997 * 109.47339 * 295.00055 * 3 2 1 6 6 C 1.53002 * 109.46935 * 174.99842 * 3 2 1 7 7 C 1.52994 * 109.47522 * 184.99824 * 6 3 2 8 8 H 1.09002 * 109.49458 * 304.97996 * 7 6 3 9 9 C 1.53093 * 109.48571 * 184.94214 * 7 6 3 10 10 C 1.53174 * 109.16375 * 182.41154 * 9 7 6 11 11 C 1.53172 * 109.03844 * 56.98496 * 10 9 7 12 12 C 1.53096 * 109.16237 * 303.01800 * 11 10 9 13 13 H 1.09005 * 109.47867 * 297.62453 * 12 11 10 14 14 C 1.50699 * 109.48331 * 177.59097 * 12 11 10 15 15 H 1.08010 * 119.99587 * 0.05823 * 14 12 11 16 16 C 1.37876 * 120.00345 * 180.02562 * 14 12 11 17 17 N 1.31512 * 119.99422 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00038 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46977 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46657 * 120.00482 * 18 16 14 21 21 H 1.48496 * 109.47083 * 240.00091 * 18 16 14 22 22 O 1.42905 * 109.47665 * 65.00319 * 7 6 3 23 23 H 1.09002 * 109.46988 * 299.99713 * 1 2 3 24 24 H 1.08999 * 109.47261 * 60.00198 * 1 2 3 25 25 H 1.09008 * 109.46960 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46988 * 240.00287 * 2 1 3 27 27 H 1.09001 * 109.47058 * 120.00298 * 2 1 3 28 28 H 1.08995 * 109.46975 * 60.00515 * 5 3 2 29 29 H 1.09006 * 109.46885 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.47046 * 299.99728 * 5 3 2 31 31 H 1.09008 * 109.47070 * 64.99902 * 6 3 2 32 32 H 1.08999 * 109.47239 * 305.00632 * 6 3 2 33 33 H 1.09001 * 109.52010 * 302.32061 * 9 7 6 34 34 H 1.09007 * 109.51637 * 62.50584 * 9 7 6 35 35 H 1.09002 * 109.54277 * 176.85322 * 10 9 7 36 36 H 1.09006 * 109.54594 * 297.02146 * 10 9 7 37 37 H 1.08996 * 109.52430 * 183.11632 * 11 10 9 38 38 H 1.08993 * 109.52369 * 62.91915 * 11 10 9 39 39 H 0.97005 * 119.99193 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 6 4.0645 2.8850 0.2511 8 1 3.6976 3.4718 -0.5910 9 6 5.5953 2.8962 0.2530 10 6 6.0875 4.3347 0.4393 11 6 5.5006 4.8995 1.7365 12 6 3.9733 4.8110 1.6774 13 1 3.6053 5.4230 0.8539 14 6 3.3904 5.3102 2.9743 15 1 4.0433 5.6570 3.7618 16 6 2.0237 5.3250 3.1555 17 7 1.2288 4.9029 2.1966 18 14 1.3012 5.9431 4.7634 19 1 2.3997 6.3577 5.6726 20 1 0.4168 7.1053 4.4942 21 1 0.5129 4.8584 5.4013 22 8 3.5839 3.4515 1.4719 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 0.5489 2.1253 -1.3968 29 1 1.9988 3.1542 -1.3074 30 1 2.0698 1.5876 -2.1491 31 1 4.0029 0.9836 -0.7596 32 1 3.8570 0.8800 1.0113 33 1 5.9631 2.2765 1.0708 34 1 5.9635 2.5051 -0.6956 35 1 7.1759 4.3431 0.4975 36 1 5.7629 4.9434 -0.4048 37 1 5.8009 5.9412 1.8489 38 1 5.8664 4.3204 2.5842 39 1 0.2672 4.9129 2.3242 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394439296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -103.928667 kcal Electronic energy + Delta-G solvation = -16823.642647 eV Core-core repulsion = 14342.992666 eV Total energy + Delta-G solvation = -2480.649981 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10050 -37.58538 -34.89863 -34.02599 -32.84069 -30.54436 -28.41554 -27.01783 -25.21452 -23.74587 -22.26134 -20.85856 -20.53103 -18.63939 -16.85749 -16.69857 -16.10038 -15.89478 -15.65866 -15.10258 -14.81654 -14.39869 -14.10228 -13.87498 -13.42174 -13.10025 -12.90157 -12.85973 -12.76684 -12.58069 -12.41906 -12.11040 -12.04213 -11.82385 -11.69011 -11.62501 -11.31118 -11.24856 -10.89274 -10.77497 -10.43822 -9.60094 -8.11496 -6.31399 1.38752 1.40332 1.52255 2.41026 3.06353 3.67121 3.82064 4.09179 4.15192 4.20335 4.24549 4.25666 4.45416 4.53990 4.59645 4.66079 4.75814 4.79840 4.90607 4.91675 4.94916 5.04211 5.12103 5.12903 5.14621 5.23518 5.24333 5.31615 5.32200 5.40617 5.47040 5.58954 5.67476 5.76988 5.81033 6.25750 6.70827 7.30485 7.45087 8.95394 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.010882 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.785050 B = 2572.412178 C = 3761.792197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.089 4.089 4 H 0.038 0.962 5 C -0.134 4.134 6 C -0.093 4.093 7 C 0.072 3.928 8 H 0.028 0.972 9 C -0.140 4.140 10 C -0.116 4.116 11 C -0.138 4.138 12 C 0.219 3.781 13 H -0.027 1.027 14 C -0.554 4.554 15 H 0.060 0.940 16 C 0.028 3.972 17 N -0.887 5.887 18 Si 0.956 3.044 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.281 1.281 22 O -0.379 6.379 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -7.854 -6.533 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.108 4.108 4 H 0.057 0.943 5 C -0.191 4.191 6 C -0.130 4.130 7 C 0.014 3.986 8 H 0.045 0.955 9 C -0.178 4.178 10 C -0.154 4.154 11 C -0.176 4.176 12 C 0.163 3.837 13 H -0.009 1.009 14 C -0.591 4.591 15 H 0.078 0.922 16 C -0.175 4.175 17 N -0.524 5.524 18 Si 0.781 3.219 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.207 1.207 22 O -0.299 6.299 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.389 -7.980 -6.459 10.812 hybrid contribution -0.519 0.853 0.788 1.272 sum 2.870 -7.127 -5.672 9.550 Atomic orbital electron populations 1.21794 0.95934 1.01782 1.01255 1.21520 0.96024 0.95171 1.02070 1.21007 0.95459 0.96418 0.97923 0.94295 1.21759 1.00859 0.99419 0.97056 1.21557 0.95514 0.94094 1.01856 1.22167 0.92992 0.94942 0.88531 0.95455 1.22165 0.96080 0.97007 1.02560 1.21595 1.00649 0.96266 0.96862 1.22115 0.97531 1.00174 0.97775 1.19467 0.89735 0.80321 0.94202 1.00941 1.21440 0.92307 1.43215 1.02173 0.92174 1.25868 0.97702 0.94241 0.99708 1.70188 1.03452 1.45033 1.33713 0.85556 0.78453 0.77963 0.79924 1.18869 1.20119 1.20683 1.88228 1.75478 1.28296 1.37915 0.94809 0.92344 0.91256 0.90289 0.92659 0.92974 0.95202 0.91059 0.88972 0.92637 0.91964 0.89330 0.90041 0.92796 0.92356 0.93105 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.67 71.98 0.70 -3.34 16 2 C -0.11 -3.10 5.40 30.59 0.17 -2.93 16 3 C -0.09 -3.20 2.34 -10.79 -0.03 -3.22 16 4 H 0.04 1.83 7.69 -2.39 -0.02 1.81 16 5 C -0.13 -4.44 8.71 71.98 0.63 -3.81 16 6 C -0.09 -3.19 4.39 30.59 0.13 -3.05 16 7 C 0.07 2.95 2.51 30.62 0.08 3.03 16 8 H 0.03 1.19 6.35 -2.39 -0.02 1.18 16 9 C -0.14 -4.73 5.42 30.68 0.17 -4.56 16 10 C -0.12 -4.05 6.03 30.71 0.19 -3.86 16 11 C -0.14 -6.02 5.36 30.68 0.16 -5.86 16 12 C 0.22 11.85 2.50 29.88 0.07 11.92 16 13 H -0.03 -1.61 8.14 -2.38 -0.02 -1.63 16 14 C -0.55 -32.47 8.79 25.60 0.23 -32.25 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.03 1.62 5.40 84.65 0.46 2.07 16 17 N -0.89 -53.81 12.84 21.45 0.28 -53.54 16 18 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 19 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 O -0.38 -20.14 8.89 -148.98 -1.32 -21.46 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.50 6.56 -2.39 -0.02 1.48 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.66 6.56 -2.39 -0.02 1.64 16 29 H 0.03 1.14 6.46 -2.38 -0.02 1.13 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -65.74 302.78 4.90 -60.84 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.98 Total: 12.91 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 2.95 Total: -45.86 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.28 Total: -53.54 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.32 Total: -21.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.74 4.90 -60.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394439296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.091 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds