Wall clock time and date at job start Mon Mar 30 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.46856 * 110.99842 * 294.21110 * 13 12 11 15 15 C 1.53041 * 109.52145 * 174.16060 * 14 13 12 16 16 C 1.53118 * 109.27945 * 59.17485 * 15 14 13 17 17 C 1.53114 * 109.16268 * 302.34816 * 16 15 14 18 18 H 1.09005 * 109.50329 * 297.70874 * 17 16 15 19 19 N 1.46906 * 109.50476 * 177.59548 * 17 16 15 20 20 C 1.46845 * 111.00237 * 170.00071 * 13 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 27 27 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 28 28 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 29 29 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 30 30 H 1.09004 * 109.45957 * 294.17194 * 14 13 12 31 31 H 1.08999 * 109.46061 * 54.14183 * 14 13 12 32 32 H 1.08999 * 109.50014 * 299.23371 * 15 14 13 33 33 H 1.08995 * 109.53478 * 179.13783 * 15 14 13 34 34 H 1.08997 * 109.51954 * 182.43909 * 16 15 14 35 35 H 1.09006 * 109.57205 * 62.28475 * 16 15 14 36 36 H 1.00898 * 110.99575 * 60.19240 * 19 17 16 37 37 H 1.00892 * 110.99999 * 184.14996 * 19 17 16 38 38 H 1.09000 * 109.45729 * 305.85256 * 20 13 12 39 39 H 1.08998 * 109.46027 * 65.82413 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 0.9904 -7.5971 1.2489 15 6 0.1261 -8.8566 1.1552 16 6 1.0259 -10.0697 0.9036 17 6 1.8310 -9.8410 -0.3786 18 1 1.1499 -9.7517 -1.2249 19 7 2.7391 -10.9750 -0.5964 20 6 2.6460 -8.5530 -0.2405 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 0.8533 -5.0451 0.8886 27 1 0.8539 -5.0446 -0.8913 28 1 3.1010 -6.0919 -0.8918 29 1 3.1012 -6.0927 0.8881 30 1 1.6888 -7.6969 2.0798 31 1 0.3515 -6.7296 1.4137 32 1 -0.5818 -8.7518 0.3330 33 1 -0.4187 -8.9951 2.0890 34 1 0.4108 -10.9627 0.7930 35 1 1.7080 -10.1990 1.7439 36 1 2.2242 -11.8375 -0.6907 37 1 3.3294 -10.8165 -1.3992 38 1 3.2094 -8.3796 -1.1573 39 1 3.3364 -8.6482 0.5975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395390050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:38 Heat of formation + Delta-G solvation = -27.705130 kcal Electronic energy + Delta-G solvation = -15618.327486 eV Core-core repulsion = 13173.275557 eV Total energy + Delta-G solvation = -2445.051929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.25828 -35.74547 -33.98655 -32.66878 -31.73457 -28.85411 -27.89707 -25.21966 -23.20848 -22.71980 -20.80126 -19.92509 -19.68739 -16.19358 -15.98927 -15.83652 -15.36575 -15.15019 -14.53554 -14.42076 -13.84550 -13.45910 -13.19335 -12.59494 -12.44758 -12.08117 -11.80567 -11.63748 -11.41364 -11.03315 -10.90110 -10.81610 -10.57271 -10.44015 -10.35379 -10.22936 -9.56306 -9.22399 -8.98751 -8.95234 -8.30104 -8.22814 -5.95252 -3.97414 3.35909 3.39949 3.42640 3.78876 4.40860 4.49885 4.62582 4.77080 4.97893 5.14384 5.27317 5.39918 5.42800 5.44440 5.51631 5.60699 5.70847 5.81829 5.85050 5.91636 5.94718 6.01457 6.17822 6.25079 6.30048 6.56496 6.82685 6.87302 7.00943 7.09951 7.16672 7.22810 7.30708 7.73728 7.90206 8.06050 8.48940 9.09942 9.66184 11.16087 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.066990 B = 0.003976 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.869749 B = 7041.083931 C = 7305.113191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.058 3.942 13 N -0.539 5.539 14 C 0.050 3.950 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.093 3.907 18 H 0.044 0.956 19 N -0.849 5.849 20 C 0.062 3.938 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.015 0.985 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.341 0.659 37 H 0.341 0.659 38 H 0.069 0.931 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -20.296 0.241 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.078 4.078 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.019 4.019 18 H 0.062 0.938 19 N -0.380 5.380 20 C -0.066 4.066 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.368 -19.979 0.576 20.127 hybrid contribution 0.565 0.827 -0.276 1.038 sum 2.933 -19.152 0.300 19.378 Atomic orbital electron populations 1.69962 1.06042 1.26605 1.50982 1.25036 0.94848 0.99209 0.95435 0.86669 0.79586 0.83216 0.78584 1.21309 1.20284 1.20266 1.21263 0.92985 0.91250 1.50404 0.92831 1.19082 0.94016 0.91307 0.97130 1.21603 0.99103 0.94020 1.00041 1.21676 0.97866 0.93548 1.02025 1.22211 0.95935 0.88355 1.00414 1.61886 1.27454 1.01969 1.35078 1.22173 0.96871 0.98682 0.90049 1.21573 0.97951 0.93845 1.02076 1.21595 0.98024 0.97872 0.97569 1.21322 0.93057 0.90139 0.97362 0.93798 1.58669 1.26248 1.04782 1.48265 1.21989 0.93862 0.89870 1.00907 0.93009 0.96756 0.96620 0.93491 0.93696 0.92545 0.91717 0.91084 0.95132 0.95054 0.89780 0.91106 0.91324 0.92281 0.91539 0.84629 0.84651 0.91215 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.11 -2.00 5.14 -26.73 -0.14 -2.14 16 12 C 0.06 0.87 4.96 -3.83 -0.02 0.85 16 13 N -0.54 -7.29 4.66 -234.67 -1.09 -8.38 16 14 C 0.05 0.63 5.29 -3.83 -0.02 0.61 16 15 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 16 C -0.11 -1.10 5.58 -26.61 -0.15 -1.25 16 17 C 0.09 0.93 3.41 -67.63 -0.23 0.70 16 18 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 19 N -0.85 -7.13 9.25 -4.60 -0.04 -7.18 16 20 C 0.06 0.74 5.00 -3.83 -0.02 0.72 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.01 0.40 8.14 -51.92 -0.42 -0.03 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.99 6.43 -51.93 -0.33 0.66 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.03 7.99 -51.93 -0.41 0.61 16 29 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 1.13 6.21 -51.93 -0.32 0.81 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.34 2.30 9.04 -39.29 -0.36 1.95 16 37 H 0.34 2.47 8.99 -39.30 -0.35 2.12 16 38 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -30.63 306.78 -9.45 -40.08 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.23 Total: -1.58 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -1.42 Total: -17.81 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.40 Total: -42.32 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.63 -9.45 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395390050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.375 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds