Wall clock time and date at job start Mon Mar 30 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.49025 * 2 1 4 4 C 1.53047 * 109.48658 * 239.93382 * 2 1 3 5 5 N 1.46954 * 109.36449 * 181.63121 * 4 2 1 6 6 C 1.46902 * 111.00345 * 183.19220 * 5 4 2 7 7 C 1.53006 * 109.46626 * 302.24733 * 6 5 4 8 8 C 1.52999 * 109.46623 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46953 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00344 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99769 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00300 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46819 * 59.99744 * 13 11 9 15 15 H 1.48494 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47196 * 300.00241 * 13 11 9 17 17 C 1.46956 * 110.87968 * 59.31976 * 5 4 2 18 18 C 1.53047 * 109.36548 * 300.67965 * 17 5 4 19 19 N 1.46958 * 109.36236 * 58.40461 * 18 17 5 20 20 H 1.09001 * 109.46931 * 299.95664 * 1 2 3 21 21 H 1.08996 * 109.46977 * 59.95298 * 1 2 3 22 22 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47351 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47283 * 300.04511 * 3 2 1 25 25 H 1.09005 * 109.46991 * 60.04431 * 3 2 1 26 26 H 1.09001 * 109.48732 * 61.66421 * 4 2 1 27 27 H 1.08996 * 109.49132 * 301.59864 * 4 2 1 28 28 H 1.08993 * 109.47737 * 182.24865 * 6 5 4 29 29 H 1.09000 * 109.47263 * 62.24427 * 6 5 4 30 30 H 1.09000 * 109.47050 * 299.99824 * 7 6 5 31 31 H 1.09001 * 109.46801 * 59.99937 * 7 6 5 32 32 H 1.09000 * 109.47486 * 299.99829 * 8 7 6 33 33 H 1.09001 * 109.47362 * 60.00551 * 8 7 6 34 34 H 0.97000 * 120.00540 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.48578 * 60.65174 * 17 5 4 36 36 H 1.08999 * 109.48961 * 180.70880 * 17 5 4 37 37 H 1.09004 * 109.48462 * 178.36388 * 18 17 5 38 38 H 1.08994 * 109.49183 * 298.41178 * 18 17 5 39 39 H 1.00899 * 111.00488 * 64.54305 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 3.5096 -0.7555 -1.2263 6 6 4.0411 -1.3756 -2.4474 7 6 3.4757 -2.7904 -2.5885 8 6 4.0288 -3.4359 -3.8606 9 6 3.4724 -4.8297 -3.9993 10 1 2.7921 -5.2161 -3.2548 11 6 3.8319 -5.6115 -5.0766 12 7 4.6599 -5.1407 -5.9834 13 14 3.1429 -7.3393 -5.2481 14 1 1.6615 -7.2755 -5.3295 15 1 3.6795 -7.9659 -6.4828 16 1 3.5394 -8.1496 -4.0686 17 6 3.9999 -1.4491 -0.0271 18 6 3.4894 -0.7263 1.2216 19 7 2.0203 -0.6937 1.1992 20 1 -0.3633 0.5132 0.8904 21 1 -0.3633 0.5145 -0.8895 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1305 1.4420 -0.0005 24 1 1.6767 1.9565 -0.8896 25 1 1.6780 1.9560 0.8904 26 1 1.7021 -0.1933 -2.1393 27 1 1.6544 -1.7420 -1.2624 28 1 5.1283 -1.4232 -2.3873 29 1 3.7508 -0.7803 -3.3132 30 1 3.7660 -3.3856 -1.7228 31 1 2.3884 -2.7427 -2.6487 32 1 3.7381 -2.8406 -4.7262 33 1 5.1161 -3.4835 -3.8008 34 1 4.9126 -5.6905 -6.7416 35 1 3.6360 -2.4765 -0.0270 36 1 5.0899 -1.4492 -0.0272 37 1 3.8278 -1.2558 2.1122 38 1 3.8759 0.2928 1.2355 39 1 1.6369 -1.6250 1.2604 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396015316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:44 Heat of formation + Delta-G solvation = -11.913097 kcal Electronic energy + Delta-G solvation = -16365.177065 eV Core-core repulsion = 13920.809930 eV Total energy + Delta-G solvation = -2444.367135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.81258 -35.84263 -33.38280 -32.61515 -30.82478 -27.77545 -27.11031 -26.74944 -24.55456 -22.72726 -21.40398 -20.17266 -18.78772 -16.40173 -15.57131 -15.43393 -15.00255 -14.86855 -14.46851 -14.22631 -13.73011 -13.34936 -12.62061 -12.28639 -12.22151 -12.03004 -11.87371 -11.76611 -11.59084 -11.22881 -10.96272 -10.88054 -10.83044 -10.71730 -10.57265 -10.51478 -9.64816 -9.46232 -9.21839 -8.44294 -8.37360 -7.83383 -6.02181 -4.05240 3.30489 3.35031 3.37382 4.06070 4.25026 4.43382 4.92812 5.03688 5.09278 5.23475 5.32886 5.36576 5.43011 5.62756 5.67807 5.73488 5.77276 5.87007 5.90543 5.95117 5.99065 6.06971 6.15540 6.20778 6.27766 6.38648 6.55961 6.74468 7.00587 7.03846 7.32702 7.35161 7.41057 7.62884 7.77961 7.96700 8.39930 9.01219 9.58893 11.08812 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.005434 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.245639 B = 5151.748406 C = 5294.269299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.109 3.891 3 C -0.128 4.128 4 C 0.025 3.975 5 N -0.532 5.532 6 C 0.052 3.948 7 C -0.143 4.143 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.051 0.949 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.012 3.988 18 C 0.058 3.942 19 N -0.679 5.679 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.261 0.739 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 10.552 12.430 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 C -0.186 4.186 4 C -0.104 4.104 5 N -0.256 5.256 6 C -0.075 4.075 7 C -0.182 4.182 8 C -0.012 4.012 9 C -0.560 4.560 10 H 0.070 0.930 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.117 4.117 18 C -0.072 4.072 19 N -0.308 5.308 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.546 11.576 12.697 17.774 hybrid contribution -0.381 -2.696 -1.068 2.924 sum -4.927 8.881 11.630 15.440 Atomic orbital electron populations 1.21806 0.93830 1.01940 1.02154 1.21009 0.94402 0.95088 0.87722 1.21727 1.02247 0.93785 1.00825 1.22842 0.88803 0.99539 0.99256 1.62424 1.07663 1.52905 1.02560 1.22343 0.99583 0.94621 0.90991 1.22205 0.99810 0.95024 1.01140 1.19010 0.96142 0.94960 0.91103 1.21204 1.27591 0.99390 1.07856 0.93050 1.25021 0.95154 0.98349 0.95852 1.69950 1.34179 1.37135 1.12161 0.86667 0.79340 0.84637 0.77421 1.20268 1.21178 1.20271 1.22842 1.00941 0.96325 0.91640 1.22131 0.87703 1.01480 0.95904 1.60848 1.07630 1.22953 1.39418 0.91789 0.92012 0.92825 0.91361 0.92754 0.92921 0.90580 0.94164 0.91155 0.91093 0.93603 0.93402 0.96622 0.96659 0.92912 0.94380 0.90524 0.90721 0.90005 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.73 37.16 0.32 -1.12 16 2 C 0.11 1.30 0.95 -131.54 -0.12 1.17 16 3 C -0.13 -1.47 8.12 37.16 0.30 -1.16 16 4 C 0.03 0.36 3.77 -3.77 -0.01 0.35 16 5 N -0.53 -8.03 4.23 -234.47 -0.99 -9.02 16 6 C 0.05 0.91 5.38 -3.82 -0.02 0.89 16 7 C -0.14 -2.98 4.44 -26.73 -0.12 -3.10 16 8 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 9 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 13 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.01 0.17 5.26 -3.77 -0.02 0.15 16 18 C 0.06 0.67 6.34 -3.77 -0.02 0.64 16 19 N -0.68 -7.97 6.35 -99.83 -0.63 -8.60 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.85 5.94 -51.93 -0.31 0.54 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.63 6.45 -51.93 -0.33 0.30 16 28 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.96 6.62 -51.93 -0.34 0.62 16 31 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.04 0.58 6.63 -51.93 -0.34 0.24 16 36 H 0.08 1.04 8.11 -51.93 -0.42 0.61 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.96 6.35 -51.93 -0.33 0.63 16 39 H 0.34 3.88 8.80 -39.29 -0.35 3.53 16 LS Contribution 298.17 15.07 4.49 4.49 Total: -1.00 -29.77 298.17 -8.61 -38.39 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.95 Total: -0.24 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.25 Total: -15.44 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.89 Total: -44.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.77 -8.61 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396015316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.474 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds