Wall clock time and date at job start Mon Mar 30 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46822 * 2 1 4 4 C 1.52996 * 109.47305 * 240.00221 * 2 1 3 5 5 O 1.42901 * 109.47091 * 65.00095 * 4 2 1 6 6 C 1.42905 * 114.00134 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47264 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47130 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00100 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99709 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99896 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99653 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46988 * 60.00566 * 13 11 9 15 15 H 1.48496 * 109.47065 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00222 * 13 11 9 17 17 C 1.52995 * 109.47096 * 120.00065 * 2 1 3 18 18 C 1.53787 * 113.61422 * 279.13865 * 17 2 1 19 19 C 1.53954 * 87.02047 * 220.04677 * 18 17 2 20 20 C 1.53785 * 113.61477 * 181.53120 * 17 2 1 21 21 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47447 * 300.00015 * 1 2 3 23 23 H 1.09001 * 109.47314 * 59.99971 * 1 2 3 24 24 H 1.08994 * 109.47303 * 305.00108 * 4 2 1 25 25 H 1.09002 * 109.47060 * 184.99638 * 4 2 1 26 26 H 1.09001 * 109.47103 * 300.00246 * 6 5 4 27 27 H 1.09004 * 109.47054 * 59.99750 * 6 5 4 28 28 H 1.09001 * 109.46832 * 299.99892 * 7 6 5 29 29 H 1.08992 * 109.47303 * 59.99596 * 7 6 5 30 30 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 31 31 H 1.09004 * 109.47298 * 59.99717 * 8 7 6 32 32 H 0.97007 * 119.99539 * 179.97438 * 12 11 9 33 33 H 1.09002 * 112.84762 * 50.33508 * 17 2 1 34 34 H 1.08997 * 113.61489 * 334.57157 * 18 17 2 35 35 H 1.09000 * 113.61308 * 105.46967 * 18 17 2 36 36 H 1.08995 * 113.54015 * 270.81607 * 19 18 17 37 37 H 1.08993 * 113.74523 * 139.94062 * 19 18 17 38 38 H 1.08994 * 113.61450 * 254.52797 * 20 17 2 39 39 H 1.08996 * 113.61008 * 25.43415 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0924 -0.5737 -3.6411 7 6 1.6344 0.2962 -4.8134 8 6 2.0947 -0.3364 -6.1282 9 6 1.6429 0.5201 -7.2830 10 1 1.0839 1.4252 -7.0977 11 6 1.9444 0.1485 -8.5762 12 7 2.6256 -0.9536 -8.8018 13 14 1.3838 1.2097 -10.0076 14 1 1.9725 2.5669 -9.8779 15 1 1.8317 0.5964 -11.2837 16 1 -0.0977 1.3099 -9.9991 17 6 2.0400 -0.7212 1.2492 18 6 2.0343 0.1559 2.5124 19 6 3.3855 -0.4899 2.8694 20 6 3.5733 -0.7443 1.3644 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -1.7197 -1.2952 25 1 3.1264 -0.7993 -1.2056 26 1 3.1799 -0.6485 -3.6468 27 1 1.6593 -1.5693 -3.7369 28 1 0.5469 0.3705 -4.8075 29 1 2.0671 1.2920 -4.7178 30 1 3.1821 -0.4111 -6.1344 31 1 1.6615 -1.3322 -6.2236 32 1 2.8373 -1.2152 -9.7116 33 1 1.5765 -1.6973 1.3932 34 1 2.1023 1.2234 2.3030 35 1 1.2341 -0.0894 3.2106 36 1 3.2899 -1.4025 3.4578 37 1 4.1093 0.2094 3.2877 38 1 4.0137 -1.7151 1.1373 39 1 4.0628 0.0767 0.8406 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398522560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:20 Heat of formation + Delta-G solvation = -66.078515 kcal Electronic energy + Delta-G solvation = -15330.596518 eV Core-core repulsion = 12851.587843 eV Total energy + Delta-G solvation = -2479.008675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49719 -37.49407 -34.14253 -33.06917 -31.28847 -27.20446 -26.41477 -25.47794 -24.69915 -22.78394 -20.79020 -20.03078 -19.56152 -16.56447 -16.00254 -15.78290 -15.61639 -14.83343 -14.43367 -14.38040 -13.81591 -12.80694 -12.75667 -12.60179 -12.58627 -12.13451 -11.96003 -11.63491 -11.51648 -11.10174 -10.88911 -10.80298 -10.65537 -10.58000 -10.37032 -10.19067 -10.13655 -9.77634 -9.39573 -9.12339 -9.08703 -8.33270 -5.98750 -4.00915 3.35568 3.39237 3.42311 3.94729 4.42727 4.46377 4.48938 4.60758 4.72006 4.99402 5.21955 5.32834 5.37082 5.41962 5.53023 5.57095 5.58847 5.68539 5.70790 5.73373 5.77723 5.83720 5.93172 6.01014 6.07779 6.19315 6.24228 6.29886 6.44067 6.73071 6.77356 7.13103 7.64557 7.70751 7.81668 8.01032 8.44251 9.05604 9.62900 11.12818 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.067222 B = 0.003642 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.429379 B = 7686.700910 C = 7888.971127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 H 0.077 0.923 4 C 0.066 3.934 5 O -0.391 6.391 6 C 0.063 3.937 7 C -0.107 4.107 8 C 0.023 3.977 9 C -0.520 4.520 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.104 4.104 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.140 4.140 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -0.322 21.525 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.095 0.905 4 C -0.011 4.011 5 O -0.311 6.311 6 C -0.013 4.013 7 C -0.145 4.145 8 C -0.014 4.014 9 C -0.558 4.558 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.123 4.123 18 C -0.171 4.171 19 C -0.181 4.181 20 C -0.178 4.178 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.285 -0.263 21.382 21.386 hybrid contribution -0.062 0.164 -0.900 0.917 sum -0.347 -0.099 20.482 20.485 Atomic orbital electron populations 1.21732 0.94658 1.01625 1.01901 1.21106 0.96549 0.99865 0.92269 0.90473 1.22425 0.98159 0.94645 0.85828 1.87870 1.78912 1.50412 1.13863 1.22755 0.97861 0.96937 0.83722 1.21641 1.00713 0.98652 0.93493 1.19045 0.96603 0.96097 0.89618 1.21198 1.35063 1.08516 0.91038 0.92578 1.25031 0.95216 0.95246 0.99019 1.69959 1.39582 1.23356 1.20733 0.86621 0.79113 0.80583 0.81481 1.20200 1.21294 1.20198 1.22557 0.96063 0.99372 0.94276 1.22958 0.97423 0.99552 0.97191 1.22843 0.97755 1.00823 0.96701 1.22967 0.96274 1.02172 0.96349 0.93094 0.93081 0.91638 0.93954 0.93754 0.94001 0.94001 0.92654 0.92659 0.96513 0.96511 0.92940 0.89277 0.90041 0.91669 0.90422 0.91607 0.91561 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.07 37.16 0.34 -1.26 16 2 C -0.08 -0.91 2.35 -90.63 -0.21 -1.12 16 3 H 0.08 0.93 7.98 -51.93 -0.41 0.51 16 4 C 0.07 0.91 5.22 37.16 0.19 1.10 16 5 O -0.39 -6.86 9.88 -35.23 -0.35 -7.21 16 6 C 0.06 1.19 5.94 37.16 0.22 1.42 16 7 C -0.11 -2.38 5.52 -26.73 -0.15 -2.52 16 8 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 9 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.10 -0.96 3.11 -89.80 -0.28 -1.24 16 18 C -0.13 -1.09 7.63 -25.82 -0.20 -1.28 16 19 C -0.14 -1.10 8.09 -25.82 -0.21 -1.31 16 20 C -0.14 -1.24 6.66 -25.91 -0.17 -1.41 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.85 7.82 -51.93 -0.41 0.45 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.58 7.33 -51.93 -0.38 0.20 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -30.29 316.40 -8.38 -38.67 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -7.50 Total: -5.55 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -1.02 Total: -21.05 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.35 Total: -7.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.29 -8.38 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398522560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.412 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds