Wall clock time and date at job start Mon Mar 30 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46822 * 2 1 4 4 C 1.52996 * 109.47305 * 240.00221 * 2 1 3 5 5 O 1.42901 * 109.47091 * 65.00095 * 4 2 1 6 6 C 1.42905 * 114.00134 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47264 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47130 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00100 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99709 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99896 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99653 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46988 * 60.00566 * 13 11 9 15 15 H 1.48496 * 109.47065 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00222 * 13 11 9 17 17 C 1.52995 * 109.47096 * 120.00065 * 2 1 3 18 18 C 1.53787 * 113.61422 * 279.13865 * 17 2 1 19 19 C 1.53954 * 87.02047 * 220.04677 * 18 17 2 20 20 C 1.53785 * 113.61477 * 181.53120 * 17 2 1 21 21 H 1.09001 * 109.47181 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47447 * 300.00015 * 1 2 3 23 23 H 1.09001 * 109.47314 * 59.99971 * 1 2 3 24 24 H 1.08994 * 109.47303 * 305.00108 * 4 2 1 25 25 H 1.09002 * 109.47060 * 184.99638 * 4 2 1 26 26 H 1.09001 * 109.47103 * 300.00246 * 6 5 4 27 27 H 1.09004 * 109.47054 * 59.99750 * 6 5 4 28 28 H 1.09001 * 109.46832 * 299.99892 * 7 6 5 29 29 H 1.08992 * 109.47303 * 59.99596 * 7 6 5 30 30 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 31 31 H 1.09004 * 109.47298 * 59.99717 * 8 7 6 32 32 H 0.97007 * 119.99539 * 179.97438 * 12 11 9 33 33 H 1.09002 * 112.84762 * 50.33508 * 17 2 1 34 34 H 1.08997 * 113.61489 * 334.57157 * 18 17 2 35 35 H 1.09000 * 113.61308 * 105.46967 * 18 17 2 36 36 H 1.08995 * 113.54015 * 270.81607 * 19 18 17 37 37 H 1.08993 * 113.74523 * 139.94062 * 19 18 17 38 38 H 1.08994 * 113.61450 * 254.52797 * 20 17 2 39 39 H 1.08996 * 113.61008 * 25.43415 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0924 -0.5737 -3.6411 7 6 1.6344 0.2962 -4.8134 8 6 2.0947 -0.3364 -6.1282 9 6 1.6429 0.5201 -7.2830 10 1 1.0839 1.4252 -7.0977 11 6 1.9444 0.1485 -8.5762 12 7 2.6256 -0.9536 -8.8018 13 14 1.3838 1.2097 -10.0076 14 1 1.9725 2.5669 -9.8779 15 1 1.8317 0.5964 -11.2837 16 1 -0.0977 1.3099 -9.9991 17 6 2.0400 -0.7212 1.2492 18 6 2.0343 0.1559 2.5124 19 6 3.3855 -0.4899 2.8694 20 6 3.5733 -0.7443 1.3644 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.6054 -1.7197 -1.2952 25 1 3.1264 -0.7993 -1.2056 26 1 3.1799 -0.6485 -3.6468 27 1 1.6593 -1.5693 -3.7369 28 1 0.5469 0.3705 -4.8075 29 1 2.0671 1.2920 -4.7178 30 1 3.1821 -0.4111 -6.1344 31 1 1.6615 -1.3322 -6.2236 32 1 2.8373 -1.2152 -9.7116 33 1 1.5765 -1.6973 1.3932 34 1 2.1023 1.2234 2.3030 35 1 1.2341 -0.0894 3.2106 36 1 3.2899 -1.4025 3.4578 37 1 4.1093 0.2094 3.2877 38 1 4.0137 -1.7151 1.1373 39 1 4.0628 0.0767 0.8406 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398522560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:19 Heat of formation + Delta-G solvation = -81.878948 kcal Electronic energy + Delta-G solvation = -15331.281677 eV Core-core repulsion = 12851.587843 eV Total energy + Delta-G solvation = -2479.693833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30432 -38.77245 -35.98102 -34.40648 -33.14355 -28.83053 -27.61393 -26.18398 -25.75779 -24.61404 -22.19758 -21.37326 -20.30345 -18.58300 -17.42212 -17.14764 -16.48311 -16.41033 -15.70830 -15.59544 -15.20822 -14.40114 -14.05826 -13.81633 -13.50133 -13.31687 -13.26056 -13.03740 -12.71739 -12.64952 -12.51920 -12.15036 -12.04386 -11.71779 -11.61184 -11.51649 -11.35876 -11.23336 -10.95446 -10.87032 -10.56794 -10.49439 -8.21973 -6.33345 1.40139 1.43667 1.51672 2.39698 2.73416 3.11210 3.68432 3.74945 3.86826 3.99631 4.08695 4.16407 4.26149 4.38665 4.43805 4.53839 4.58390 4.69427 4.77709 4.89330 4.91116 4.91473 4.93000 4.96808 5.06083 5.11146 5.15948 5.16630 5.27657 5.39623 5.46006 5.47956 5.68121 5.68558 5.81119 6.18656 6.35107 6.82096 7.35791 8.89984 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.067222 B = 0.003642 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.429379 B = 7686.700910 C = 7888.971127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.069 0.931 4 C 0.060 3.940 5 O -0.404 6.404 6 C 0.074 3.926 7 C -0.096 4.096 8 C 0.028 3.972 9 C -0.548 4.548 10 H 0.059 0.941 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.968 3.032 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.103 4.103 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.146 4.146 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.053 0.947 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 0.152 22.460 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.087 0.913 4 C -0.017 4.017 5 O -0.324 6.324 6 C -0.002 4.002 7 C -0.134 4.134 8 C -0.009 4.009 9 C -0.586 4.586 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.121 4.121 18 C -0.169 4.169 19 C -0.175 4.175 20 C -0.183 4.183 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.700 0.215 22.341 22.353 hybrid contribution 0.084 -0.013 -1.142 1.145 sum -0.617 0.202 21.199 21.209 Atomic orbital electron populations 1.21711 0.94501 1.01881 1.01613 1.21104 0.96653 0.99457 0.92144 0.91275 1.22697 0.98817 0.94998 0.85145 1.87834 1.79154 1.51191 1.14264 1.22453 0.98015 0.96202 0.83580 1.21389 1.00412 0.98719 0.92866 1.18922 0.95099 0.95195 0.91719 1.21635 1.35527 1.09092 0.92307 0.92238 1.25998 0.95042 0.96599 1.02140 1.70085 1.40477 1.25023 1.21666 0.85460 0.79023 0.78805 0.77529 1.19147 1.20583 1.19141 1.22563 0.96269 0.99706 0.93572 1.22953 0.98081 0.99240 0.96585 1.22836 0.97503 1.01330 0.95856 1.22993 0.95892 1.02009 0.97405 0.92564 0.91406 0.93866 0.93279 0.93107 0.93529 0.93534 0.92819 0.92833 0.98515 0.98511 0.92616 0.88585 0.90269 0.90646 0.89414 0.91100 0.91381 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.07 71.98 0.65 -2.32 16 2 C -0.08 -1.62 2.35 -10.80 -0.03 -1.65 16 3 H 0.07 1.61 7.98 -2.39 -0.02 1.59 16 4 C 0.06 1.57 5.22 71.98 0.38 1.95 16 5 O -0.40 -13.99 9.88 -148.98 -1.47 -15.46 16 6 C 0.07 2.78 5.94 71.98 0.43 3.20 16 7 C -0.10 -4.30 5.52 30.59 0.17 -4.13 16 8 C 0.03 1.52 4.97 29.85 0.15 1.66 16 9 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 11 C 0.00 0.01 5.46 84.66 0.46 0.47 16 12 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 13 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 C -0.10 -1.71 3.11 -10.27 -0.03 -1.74 16 18 C -0.13 -1.85 7.63 31.18 0.24 -1.61 16 19 C -0.14 -1.82 8.09 31.18 0.25 -1.56 16 20 C -0.15 -2.35 6.66 31.12 0.21 -2.14 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.10 7.82 -2.39 -0.02 1.08 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.27 7.33 -2.39 -0.02 1.26 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 32 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.16 7.99 -2.39 -0.02 1.14 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -64.02 316.40 4.91 -59.11 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.96 Total: 6.33 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 3.11 Total: -39.78 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.47 Total: -15.46 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.02 4.91 -59.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398522560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.764 kcal (2) G-P(sol) polarization free energy of solvation -64.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds