Wall clock time and date at job start Mon Mar 30 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 110.64426 * 2 1 4 4 C 1.54602 * 110.72317 * 123.14759 * 2 1 3 5 5 C 1.53992 * 105.13966 * 140.49461 * 4 2 1 6 6 N 1.47897 * 107.05920 * 1.22476 * 5 4 2 7 7 C 1.46900 * 111.00118 * 214.15537 * 6 5 4 8 8 C 1.53000 * 109.47200 * 174.72993 * 7 6 5 9 9 C 1.53000 * 109.47227 * 174.72185 * 8 7 6 10 10 C 1.53000 * 109.47227 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47227 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99870 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00300 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99602 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00213 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.46986 * 90.00108 * 15 13 11 17 17 H 1.48497 * 109.47304 * 210.00030 * 15 13 11 18 18 H 1.48505 * 109.47184 * 330.00492 * 15 13 11 19 19 C 1.48536 * 105.82258 * 334.67010 * 6 5 4 20 20 H 1.08999 * 109.47454 * 298.30299 * 1 2 3 21 21 H 1.08994 * 109.47337 * 58.30959 * 1 2 3 22 22 H 1.09006 * 109.46943 * 178.30775 * 1 2 3 23 23 H 1.00902 * 111.00435 * 61.69690 * 3 2 1 24 24 H 1.00900 * 110.99843 * 185.65143 * 3 2 1 25 25 H 1.08999 * 110.30788 * 21.57927 * 4 2 1 26 26 H 1.09004 * 110.39441 * 259.45163 * 4 2 1 27 27 H 1.08997 * 109.91856 * 241.87035 * 5 4 2 28 28 H 1.09003 * 110.08156 * 120.67059 * 5 4 2 29 29 H 1.09002 * 109.47250 * 294.73146 * 7 6 5 30 30 H 1.09001 * 109.46951 * 54.73349 * 7 6 5 31 31 H 1.09001 * 109.47434 * 294.72627 * 8 7 6 32 32 H 1.08999 * 109.46973 * 54.72681 * 8 7 6 33 33 H 1.09001 * 109.47274 * 300.00540 * 9 8 7 34 34 H 1.08999 * 109.46739 * 60.00353 * 9 8 7 35 35 H 1.09001 * 109.47434 * 300.00442 * 10 9 8 36 36 H 1.08999 * 109.46973 * 60.00496 * 10 9 8 37 37 H 0.97003 * 119.99987 * 179.97438 * 14 13 11 38 38 H 1.08996 * 110.67281 * 157.63781 * 19 6 5 39 39 H 1.09000 * 110.66522 * 280.77722 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0478 1.3746 0.0000 4 6 2.0770 -0.7907 1.2107 5 6 3.2920 -1.5662 0.6688 6 7 3.4359 -1.2051 -0.7582 7 6 3.9294 -2.3450 -1.5425 8 6 3.9404 -1.9759 -3.0273 9 6 4.5763 -3.1122 -3.8306 10 6 4.5867 -2.7434 -5.3154 11 6 5.2125 -3.8629 -6.1068 12 1 5.5669 -4.7490 -5.6012 13 6 5.3326 -3.7559 -7.4761 14 7 4.9015 -2.6766 -8.0916 15 14 6.1076 -5.1439 -8.4570 16 1 5.0539 -6.1039 -8.8737 17 1 6.7740 -4.5868 -9.6615 18 1 7.1109 -5.8445 -7.6157 19 6 2.0821 -0.7940 -1.2105 20 1 -0.3634 0.4872 0.9048 21 1 -0.3634 0.5398 -0.8744 22 1 -0.3633 -1.0273 -0.0303 23 1 1.7574 1.8705 0.8294 24 1 3.0525 1.3825 -0.0928 25 1 1.3218 -1.4828 1.5830 26 1 2.3864 -0.1078 2.0020 27 1 3.1213 -2.6384 0.7651 28 1 4.1912 -1.2830 1.2160 29 1 4.9409 -2.5953 -1.2228 30 1 3.2760 -3.2034 -1.3864 31 1 2.9179 -1.8167 -3.3698 32 1 4.5178 -1.0625 -3.1703 33 1 5.5988 -3.2714 -3.4881 34 1 3.9989 -4.0255 -3.6876 35 1 3.5641 -2.5845 -5.6576 36 1 5.1639 -1.8299 -5.4588 37 1 4.9864 -2.6011 -9.0550 38 1 2.1481 -0.1556 -2.0914 39 1 1.4623 -1.6676 -1.4125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405758771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:56 Heat of formation + Delta-G solvation = -22.934790 kcal Electronic energy + Delta-G solvation = -15722.980705 eV Core-core repulsion = 13278.135633 eV Total energy + Delta-G solvation = -2444.845072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.62797 -35.68404 -33.85543 -32.17884 -30.15058 -29.36019 -27.96463 -26.17137 -24.18241 -21.89059 -20.59023 -20.17949 -19.36821 -16.26983 -16.07706 -16.02127 -15.14538 -14.79530 -14.40966 -14.22913 -13.50321 -13.37296 -13.03761 -12.41730 -12.39364 -12.13633 -11.94411 -11.74356 -11.42618 -11.22875 -11.03556 -10.93897 -10.77005 -10.50031 -10.44027 -10.33025 -9.59079 -9.22409 -8.97161 -8.80622 -8.35632 -8.29561 -5.94789 -3.97000 3.34656 3.40658 3.44256 3.99784 4.32731 4.44117 4.49844 4.58053 4.84790 5.08098 5.24210 5.38005 5.40740 5.45632 5.51845 5.58943 5.61026 5.68862 5.76100 5.87977 5.92214 5.96657 6.10743 6.14785 6.31173 6.52646 6.83042 6.93236 6.99863 7.07064 7.13281 7.26671 7.41031 7.74347 7.90541 8.06458 8.49216 9.10497 9.66688 11.16586 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054855 B = 0.004207 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.316805 B = 6654.107201 C = 6899.756716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.113 3.887 3 N -0.830 5.830 4 C -0.162 4.162 5 C 0.033 3.967 6 N -0.518 5.518 7 C 0.049 3.951 8 C -0.115 4.115 9 C -0.109 4.109 10 C 0.021 3.979 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.044 3.956 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.335 0.665 24 H 0.352 0.648 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.094 0.906 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 4.632 18.890 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.019 3.981 3 N -0.360 5.360 4 C -0.202 4.202 5 C -0.095 4.095 6 N -0.242 5.242 7 C -0.079 4.079 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.084 4.084 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.147 0.853 24 H 0.166 0.834 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.914 5.220 17.974 19.953 hybrid contribution 0.412 -1.813 0.391 1.900 sum -6.502 3.407 18.366 19.778 Atomic orbital electron populations 1.21723 0.93380 1.01766 1.02399 1.21688 0.94574 0.88339 0.93493 1.58759 1.18071 1.13667 1.45549 1.23310 0.97904 1.00120 0.98860 1.22841 0.98036 0.98156 0.90492 1.64823 1.23090 1.34715 1.01577 1.22415 0.99946 0.90543 0.95006 1.21680 1.01257 1.00428 0.91906 1.21596 0.98774 0.95992 0.98331 1.19088 0.97047 0.96731 0.88726 1.21292 1.39280 1.03265 0.92005 0.92805 1.25031 0.95747 0.95744 0.97987 1.69973 1.47248 1.27206 1.09108 0.86615 0.79468 0.82361 0.79674 1.20722 1.21224 1.19912 1.23332 0.88956 0.98165 0.97936 0.92738 0.91441 0.92267 0.85253 0.83396 0.91234 0.91439 0.93870 0.90739 0.90872 0.95104 0.92656 0.91561 0.93447 0.93761 0.96753 0.96573 0.93060 0.88772 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.81 37.15 0.33 -0.89 16 2 C 0.11 1.15 1.20 -129.74 -0.16 1.00 16 3 N -0.83 -8.28 9.01 2.23 0.02 -8.26 16 4 C -0.16 -1.49 6.23 -25.37 -0.16 -1.65 16 5 C 0.03 0.36 6.70 -2.76 -0.02 0.34 16 6 N -0.52 -6.84 5.24 -230.46 -1.21 -8.04 16 7 C 0.05 0.72 4.87 -3.82 -0.02 0.70 16 8 C -0.11 -2.04 4.86 -26.73 -0.13 -2.17 16 9 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 12 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 15 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.04 0.56 4.38 -1.90 -0.01 0.55 16 20 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 23 H 0.33 2.68 9.05 -39.29 -0.36 2.33 16 24 H 0.35 3.73 8.85 -39.29 -0.35 3.38 16 25 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 26 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 27 H 0.04 0.47 7.65 -51.93 -0.40 0.07 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.45 7.95 -51.93 -0.41 0.04 16 31 H 0.05 0.99 7.17 -51.93 -0.37 0.62 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.09 1.35 7.77 -51.93 -0.40 0.94 16 39 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -30.41 309.85 -8.94 -39.35 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.29 Total: 0.14 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.85 Total: -18.07 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.45 Total: -43.14 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.41 -8.94 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405758771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.420 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds