Wall clock time and date at job start Mon Mar 30 2020 03:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.53001 * 109.47207 * 240.00211 * 2 1 3 5 5 C 1.53001 * 109.46892 * 120.00010 * 2 1 3 6 6 H 1.09003 * 109.50583 * 203.12847 * 5 2 1 7 7 C 1.53053 * 109.48653 * 83.07647 * 5 2 1 8 8 N 1.46958 * 109.36047 * 181.62939 * 7 5 2 9 9 C 1.46949 * 110.88200 * 59.32424 * 8 7 5 10 10 C 1.53056 * 109.36619 * 300.67580 * 9 8 7 11 11 N 1.46958 * 109.49035 * 323.18847 * 5 2 1 12 12 C 1.46903 * 110.99654 * 303.15475 * 11 5 2 13 13 C 1.50707 * 109.47219 * 303.96505 * 12 11 5 14 14 H 1.08005 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00016 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99790 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00027 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47365 * 89.99542 * 17 15 13 19 19 H 1.48494 * 109.46915 * 209.99781 * 17 15 13 20 20 H 1.48505 * 109.46983 * 329.99640 * 17 15 13 21 21 H 1.09001 * 109.47182 * 299.99976 * 1 2 3 22 22 H 1.09009 * 109.47177 * 59.99520 * 1 2 3 23 23 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47144 * 183.05267 * 3 2 1 25 25 H 1.08994 * 109.47303 * 303.05765 * 3 2 1 26 26 H 1.09007 * 109.47203 * 63.05586 * 3 2 1 27 27 H 1.09000 * 109.46580 * 300.00297 * 4 2 1 28 28 H 1.08998 * 109.47150 * 59.99658 * 4 2 1 29 29 H 1.08993 * 109.47289 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.48904 * 61.66504 * 7 5 2 31 31 H 1.08998 * 109.48758 * 301.59811 * 7 5 2 32 32 H 1.00897 * 111.00334 * 295.45144 * 8 7 5 33 33 H 1.09003 * 109.49194 * 60.64209 * 9 8 7 34 34 H 1.09001 * 109.49305 * 180.68837 * 9 8 7 35 35 H 1.08995 * 109.49282 * 178.36901 * 10 9 8 36 36 H 1.09001 * 109.48896 * 298.41838 * 10 9 8 37 37 H 1.09001 * 109.47228 * 63.96632 * 12 11 5 38 38 H 1.09003 * 109.46884 * 183.96918 * 12 11 5 39 39 H 0.96997 * 119.99826 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2493 6 1 3.0521 -0.3859 1.4755 7 6 2.0461 -2.2314 1.0002 8 7 2.4992 -2.9236 2.2147 9 6 1.6170 -2.6208 3.3502 10 6 1.6107 -1.1106 3.5994 11 7 1.1576 -0.4184 2.3848 12 6 1.0657 1.0307 2.6081 13 6 2.4482 1.5974 2.8049 14 1 3.3090 0.9461 2.7683 15 6 2.6141 2.9472 3.0318 16 7 3.8205 3.4416 3.2041 17 14 1.1252 4.0735 3.0958 18 1 0.6244 4.1532 4.4915 19 1 1.5102 5.4298 2.6298 20 1 0.0573 3.5326 2.2169 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1286 1.4429 -0.0547 25 1 1.6327 1.9719 -0.8612 26 1 1.7221 1.9403 0.9162 27 1 1.6766 -1.7488 -1.2492 28 1 1.6766 -0.2074 -2.1392 29 1 3.1299 -0.7216 -1.2491 30 1 2.7224 -2.4614 0.1768 31 1 1.0389 -2.5623 0.7472 32 1 3.4570 -2.6894 2.4285 33 1 0.6048 -2.9562 3.1240 34 1 1.9800 -3.1349 4.2402 35 1 0.9345 -0.8806 4.4227 36 1 2.6179 -0.7797 3.8526 37 1 0.5993 1.5027 1.7433 38 1 0.4640 1.2240 3.4962 39 1 3.9372 4.3913 3.3633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407307601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:47 Heat of formation + Delta-G solvation = -0.157095 kcal Electronic energy + Delta-G solvation = -17677.011178 eV Core-core repulsion = 15233.153821 eV Total energy + Delta-G solvation = -2443.857357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17866 -37.07160 -35.81086 -34.06151 -30.79000 -30.08620 -28.15823 -27.67250 -25.86275 -24.16381 -23.16253 -21.45695 -19.61865 -18.75681 -17.17685 -16.53367 -16.19573 -15.94455 -15.65330 -15.49934 -14.57061 -14.48459 -14.26635 -13.93570 -13.44399 -13.29837 -13.06279 -12.88451 -12.74823 -12.47170 -12.36843 -12.27353 -11.95660 -11.89993 -11.85542 -11.62458 -11.35861 -11.27990 -10.76015 -10.60968 -9.32939 -8.89584 -8.30529 -6.29492 1.30581 1.33255 1.42528 2.30733 3.05290 3.22390 3.44165 3.98243 4.06946 4.23866 4.33373 4.38143 4.49799 4.54426 4.61945 4.76680 4.83309 4.89778 4.95383 4.97064 5.01769 5.07683 5.09966 5.13916 5.18342 5.24247 5.35382 5.41839 5.45341 5.54733 5.75152 5.93640 6.06079 6.11554 6.34957 6.43757 6.49254 6.72072 7.31681 8.85872 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.011880 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.640111 B = 2356.247082 C = 2819.808801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.053 4.053 3 C -0.164 4.164 4 C -0.135 4.135 5 C 0.069 3.931 6 H 0.007 0.993 7 C 0.069 3.931 8 N -0.686 5.686 9 C 0.069 3.931 10 C 0.021 3.979 11 N -0.513 5.513 12 C 0.142 3.858 13 C -0.519 4.519 14 H 0.030 0.970 15 C 0.018 3.982 16 N -0.946 5.946 17 Si 0.927 3.073 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.241 1.241 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.019 0.981 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.334 0.666 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.005 0.995 37 H 0.061 0.939 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 -9.526 -5.559 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.054 4.054 3 C -0.221 4.221 4 C -0.192 4.192 5 C -0.041 4.041 6 H 0.025 0.975 7 C -0.061 4.061 8 N -0.313 5.313 9 C -0.061 4.061 10 C -0.109 4.109 11 N -0.236 5.236 12 C 0.015 3.985 13 C -0.558 4.558 14 H 0.048 0.952 15 C -0.180 4.180 16 N -0.587 5.587 17 Si 0.751 3.249 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.164 1.164 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.775 -10.185 -5.796 14.063 hybrid contribution 1.323 2.553 0.901 3.013 sum -6.452 -7.632 -4.895 11.128 Atomic orbital electron populations 1.21806 0.93508 1.01965 1.01025 1.20400 0.96649 0.94345 0.94010 1.22544 0.98961 0.97495 1.03097 1.21925 1.00266 1.00859 0.96187 1.22199 0.93540 0.96837 0.91528 0.97465 1.22314 1.02038 0.89017 0.92705 1.60947 1.06206 1.59544 1.04584 1.22083 0.98534 0.91419 0.94025 1.22741 0.97868 0.96674 0.93608 1.62687 1.48081 1.08751 1.04064 1.20602 0.94376 0.86671 0.96879 1.21617 0.93451 0.93243 1.47490 0.95183 1.25709 0.98005 0.99784 0.94534 1.70060 1.23694 1.13848 1.51116 0.86012 0.80914 0.78405 0.79538 1.19682 1.21233 1.16410 0.92831 0.93043 0.91895 0.96199 0.93737 0.89330 0.90577 0.91991 0.93734 0.89354 0.89749 0.84920 0.89785 0.89273 0.91268 0.97643 0.92146 0.96778 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 7.78 71.98 0.56 -3.31 16 2 C -0.05 -1.79 0.58 -52.18 -0.03 -1.82 16 3 C -0.16 -6.70 7.24 71.98 0.52 -6.18 16 4 C -0.13 -3.63 7.32 71.98 0.53 -3.10 16 5 C 0.07 2.55 1.42 44.92 0.06 2.61 16 6 H 0.01 0.34 6.16 -2.39 -0.01 0.32 16 7 C 0.07 2.03 4.75 86.31 0.41 2.44 16 8 N -0.69 -19.91 6.91 -513.43 -3.55 -23.46 16 9 C 0.07 2.00 6.72 86.31 0.58 2.58 16 10 C 0.02 0.79 5.35 86.31 0.46 1.25 16 11 N -0.51 -20.01 3.75 -874.98 -3.28 -23.29 16 12 C 0.14 6.46 2.96 85.56 0.25 6.71 16 13 C -0.52 -28.16 6.02 25.60 0.15 -28.01 16 14 H 0.03 1.86 6.05 -2.91 -0.02 1.85 16 15 C 0.02 0.99 5.17 84.66 0.44 1.43 16 16 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 17 Si 0.93 43.07 27.02 68.60 1.85 44.92 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 21 H 0.05 1.87 4.99 -2.39 -0.01 1.86 16 22 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.06 1.72 7.44 -2.39 -0.02 1.70 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.09 4.13 2.27 -2.38 -0.01 4.12 16 27 H 0.08 1.72 6.44 -2.39 -0.02 1.71 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.09 2.34 6.55 -2.38 -0.02 2.33 16 31 H 0.08 2.35 7.39 -2.39 -0.02 2.33 16 32 H 0.33 9.98 8.89 -89.70 -0.80 9.19 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 36 H 0.01 0.23 7.07 -2.39 -0.02 0.21 16 37 H 0.06 2.73 2.68 -2.39 -0.01 2.73 16 38 H 0.01 0.66 7.50 -2.39 -0.02 0.64 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -61.33 274.49 -0.55 -61.88 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.18 Total: 23.16 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.94 Total: -25.42 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -6.53 Total: -104.55 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.85 Total: 44.92 kcal Total: -61.33 -0.55 -61.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407307601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.725 kcal (2) G-P(sol) polarization free energy of solvation -61.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds