Wall clock time and date at job start Mon Mar 30 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47194 * 2 1 4 4 C 1.52999 * 109.47276 * 239.99854 * 2 1 3 5 5 N 1.46901 * 109.47066 * 120.00394 * 2 1 3 6 6 C 1.47480 * 111.00318 * 154.52170 * 5 2 1 7 7 C 1.53634 * 87.95246 * 221.34384 * 6 5 2 8 8 C 1.47483 * 111.00176 * 58.54702 * 5 2 1 9 9 H 1.08993 * 113.47327 * 23.88004 * 8 5 2 10 10 C 1.52996 * 113.47647 * 253.47382 * 8 5 2 11 11 N 1.46897 * 109.47296 * 54.52604 * 10 8 5 12 12 C 1.46907 * 110.99970 * 172.39448 * 11 10 8 13 13 C 1.50699 * 109.47052 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99958 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99935 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00288 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99840 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47454 * 59.99861 * 17 15 13 19 19 H 1.48502 * 109.46976 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47200 * 299.99239 * 17 15 13 21 21 H 1.09002 * 109.47119 * 306.51936 * 1 2 3 22 22 H 1.08996 * 109.46987 * 66.52179 * 1 2 3 23 23 H 1.09002 * 109.47126 * 186.52154 * 1 2 3 24 24 H 1.09001 * 109.46949 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47311 * 299.99913 * 3 2 1 26 26 H 1.09008 * 109.47018 * 60.00342 * 3 2 1 27 27 H 1.08999 * 109.47323 * 286.64195 * 4 2 1 28 28 H 1.08999 * 109.46818 * 46.63583 * 4 2 1 29 29 H 1.08994 * 109.47231 * 166.63561 * 4 2 1 30 30 H 1.08997 * 113.47111 * 336.06329 * 6 5 2 31 31 H 1.09005 * 113.47067 * 106.46807 * 6 5 2 32 32 H 1.08998 * 114.17340 * 272.35166 * 7 6 5 33 33 H 1.08999 * 114.19953 * 139.60580 * 7 6 5 34 34 H 1.09003 * 109.46918 * 174.52764 * 10 8 5 35 35 H 1.09003 * 109.47472 * 294.51849 * 10 8 5 36 36 H 1.00897 * 110.99825 * 296.34401 * 11 10 8 37 37 H 1.09000 * 109.46794 * 299.99691 * 12 11 10 38 38 H 1.09003 * 109.47225 * 59.99404 * 12 11 10 39 39 H 0.96992 * 120.00314 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0197 -0.6926 1.1994 6 6 3.3677 -1.2475 0.9760 7 6 2.9132 -2.5081 1.7276 8 6 1.5185 -2.0787 1.2510 9 1 1.2508 -2.4802 0.2737 10 6 0.4239 -2.2924 2.2984 11 7 -0.6635 -1.3308 2.0735 12 6 -1.8111 -1.6210 2.9436 13 6 -2.9044 -0.6166 2.6847 14 1 -2.7609 0.1599 1.9479 15 6 -4.0874 -0.6883 3.3892 16 7 -4.2620 -1.6335 4.2868 17 14 -5.4422 0.5572 3.0687 18 1 -5.8653 0.4739 1.6477 19 1 -6.6023 0.2638 3.9481 20 1 -4.9364 1.9236 3.3554 21 1 -0.3633 0.6116 0.8259 22 1 -0.3633 0.4094 -0.9426 23 1 -0.3633 -1.0210 0.1167 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.8837 -1.7943 -1.1385 28 1 1.4959 -0.3631 -2.1231 29 1 3.1037 -0.5202 -1.3760 30 1 3.5944 -1.4276 -0.0748 31 1 4.1551 -0.6947 1.4884 32 1 3.0509 -2.4578 2.8077 33 1 3.2668 -3.4414 1.2894 34 1 0.0347 -3.3072 2.2152 35 1 0.8403 -2.1437 3.2947 36 1 -0.3413 -0.3836 2.2040 37 1 -2.1824 -2.6239 2.7328 38 1 -1.5008 -1.5602 3.9867 39 1 -5.0943 -1.6842 4.7821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594718487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:40 Heat of formation + Delta-G solvation = 49.044860 kcal Electronic energy + Delta-G solvation = -16722.693237 eV Core-core repulsion = 14280.969437 eV Total energy + Delta-G solvation = -2441.723800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78311 -35.11842 -34.68616 -32.33011 -28.51419 -27.44325 -27.19697 -26.54692 -25.34578 -22.27732 -21.04268 -20.17638 -18.34716 -16.49127 -16.13479 -15.10975 -14.64677 -14.47114 -14.35419 -13.71915 -13.49240 -12.82957 -12.62679 -12.44561 -12.27546 -11.92193 -11.66259 -11.38803 -11.11490 -11.02424 -10.97582 -10.76007 -10.71952 -10.60124 -10.35448 -10.31109 -9.97564 -9.61058 -9.12037 -8.46812 -8.40628 -7.05784 -5.97611 -3.98990 3.36596 3.40176 3.43332 4.17368 4.47180 4.65067 4.88795 5.01306 5.16545 5.25239 5.38249 5.40566 5.53545 5.63155 5.66805 5.76862 5.80391 5.88926 5.91897 5.94766 6.08899 6.11465 6.24838 6.33984 6.37654 6.44446 6.50795 6.70505 6.74621 7.22881 7.36700 7.45483 7.55433 7.85059 8.21097 8.52858 8.72759 9.10870 9.65611 11.13610 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.035276 B = 0.006889 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.546853 B = 4063.197507 C = 4615.633350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 C -0.129 4.129 4 C -0.176 4.176 5 N -0.454 5.454 6 C -0.016 4.016 7 C -0.146 4.146 8 C 0.035 3.965 9 H 0.082 0.918 10 C 0.072 3.928 11 N -0.682 5.682 12 C 0.189 3.811 13 C -0.510 4.510 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.102 0.898 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.339 0.661 37 H 0.025 0.975 38 H -0.016 1.016 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.337 0.636 -8.409 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 C -0.187 4.187 4 C -0.235 4.235 5 N -0.177 5.177 6 C -0.145 4.145 7 C -0.184 4.184 8 C -0.075 4.075 9 H 0.100 0.900 10 C -0.059 4.059 11 N -0.315 5.315 12 C 0.063 3.937 13 C -0.549 4.549 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.159 0.841 37 H 0.043 0.957 38 H 0.002 0.998 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.773 0.737 -8.271 16.083 hybrid contribution -0.357 0.466 0.021 0.587 sum 13.416 1.203 -8.250 15.796 Atomic orbital electron populations 1.22364 0.91218 1.06482 1.00438 1.21556 0.97554 0.94499 0.88765 1.21727 0.99914 0.95237 1.01819 1.22525 1.00688 1.01135 0.99104 1.69110 1.02793 1.12557 1.33221 1.23964 0.94503 0.95804 1.00256 1.23256 0.96635 0.97253 1.01257 1.23480 0.94486 0.89950 0.99574 0.89988 1.21771 0.91628 0.97557 0.94901 1.61254 1.06829 1.05963 1.57447 1.19576 0.87461 0.97269 0.89437 1.21151 0.99350 1.13365 1.21004 0.92097 1.24983 0.98542 0.95904 0.95167 1.69953 1.26032 1.33009 1.24895 0.86580 0.81228 0.81582 0.78101 1.20230 1.21410 1.20315 0.91487 0.94248 0.87947 0.93605 0.92791 0.91935 0.92147 0.92170 0.92677 0.90447 0.90602 0.89258 0.91218 0.91839 0.95932 0.84066 0.95728 0.99839 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 6.77 37.16 0.25 -2.15 16 2 C 0.07 0.91 0.73 -131.60 -0.10 0.81 16 3 C -0.13 -1.64 8.66 37.16 0.32 -1.32 16 4 C -0.18 -2.06 7.06 37.16 0.26 -1.80 16 5 N -0.45 -6.56 5.53 -220.61 -1.22 -7.78 16 6 C -0.02 -0.19 7.28 -7.48 -0.05 -0.25 16 7 C -0.15 -1.75 8.01 -26.13 -0.21 -1.96 16 8 C 0.03 0.51 2.38 -71.42 -0.17 0.34 16 9 H 0.08 1.19 5.60 -51.93 -0.29 0.90 16 10 C 0.07 1.31 5.85 -3.83 -0.02 1.29 16 11 N -0.68 -14.64 3.39 -115.05 -0.39 -15.03 16 12 C 0.19 5.04 5.42 -4.97 -0.03 5.01 16 13 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H 0.07 1.23 6.45 -51.93 -0.33 0.89 16 22 H 0.04 0.59 8.05 -51.93 -0.42 0.18 16 23 H 0.10 1.88 5.01 -51.93 -0.26 1.62 16 24 H 0.04 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.06 0.71 5.64 -51.93 -0.29 0.42 16 28 H 0.06 0.68 8.01 -51.93 -0.42 0.26 16 29 H 0.05 0.57 6.67 -51.93 -0.35 0.23 16 30 H 0.08 0.83 4.90 -51.93 -0.25 0.57 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.02 0.42 7.87 -51.93 -0.41 0.02 16 36 H 0.34 7.33 5.88 -39.29 -0.23 7.10 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 38 H -0.02 -0.47 8.14 -51.93 -0.42 -0.89 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 293.18 15.07 4.42 4.42 Total: -1.00 -29.42 293.18 -8.23 -37.65 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.59 Total: 3.76 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.16 Total: -13.45 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.87 Total: -49.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.42 -8.23 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594718487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.692 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds