Wall clock time and date at job start Mon Mar 30 2020 03:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.40011 * 111.00000 * 2 1 4 4 C 1.54200 * 112.08101 * 188.09361 * 3 2 1 5 5 N 1.44569 * 108.84959 * 281.17680 * 4 3 2 6 6 C 1.46897 * 111.00440 * 220.34984 * 5 4 3 7 7 C 1.50712 * 109.46880 * 66.04575 * 6 5 4 8 8 H 1.07994 * 119.99481 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00281 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00077 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46690 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47345 * 119.99812 * 11 9 7 14 14 H 1.48504 * 109.47137 * 240.00176 * 11 9 7 15 15 C 1.48066 * 113.85377 * 94.23242 * 5 4 3 16 16 C 1.53913 * 112.60437 * 318.20409 * 15 5 4 17 17 C 1.47914 * 110.99314 * 127.96555 * 2 1 3 18 18 C 1.52997 * 109.63267 * 273.49337 * 17 2 1 19 19 C 1.52995 * 109.63366 * 33.89165 * 17 2 1 20 20 H 1.08998 * 109.47301 * 292.04017 * 1 2 3 21 21 H 1.09001 * 109.46720 * 52.03161 * 1 2 3 22 22 H 1.08997 * 109.47189 * 172.03227 * 1 2 3 23 23 H 1.08999 * 108.95436 * 308.75696 * 3 2 1 24 24 H 1.08992 * 108.96155 * 67.41698 * 3 2 1 25 25 H 1.08997 * 109.57517 * 40.99218 * 4 3 2 26 26 H 1.09001 * 109.57186 * 161.24391 * 4 3 2 27 27 H 1.08996 * 109.47711 * 186.04179 * 6 5 4 28 28 H 1.08997 * 109.47002 * 306.05128 * 6 5 4 29 29 H 0.96993 * 120.00096 * 179.97438 * 10 9 7 30 30 H 1.08998 * 108.88199 * 79.08851 * 15 5 4 31 31 H 1.09001 * 108.88213 * 197.54891 * 15 5 4 32 32 H 1.08997 * 109.26723 * 198.03195 * 16 15 5 33 33 H 1.09001 * 108.75976 * 79.31641 * 16 15 5 34 34 H 1.08994 * 109.46862 * 188.85671 * 18 17 2 35 35 H 1.09000 * 109.46972 * 68.85497 * 18 17 2 36 36 H 1.08995 * 109.47096 * 308.85990 * 18 17 2 37 37 H 1.09001 * 109.47509 * 299.60234 * 19 17 2 38 38 H 1.09001 * 109.47367 * 59.60430 * 19 17 2 39 39 H 1.09003 * 109.46888 * 179.59912 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9708 1.3071 0.0000 4 6 3.4993 1.3413 -0.2012 5 7 4.1427 1.0192 1.0527 6 6 5.3222 1.8669 1.2723 7 6 4.8857 3.2983 1.4507 8 1 3.8371 3.5526 1.4058 9 6 5.8252 4.2830 1.6712 10 7 7.1021 3.9732 1.7263 11 14 5.2842 6.0572 1.8930 12 1 3.8052 6.1404 1.7886 13 1 5.7148 6.5427 3.2287 14 1 5.9026 6.8989 0.8373 15 6 4.4847 -0.4140 1.1994 16 6 3.3676 -1.3436 0.6926 17 6 1.9990 -0.8496 1.0887 18 6 2.1012 -0.0302 2.3768 19 6 1.0664 -2.0419 1.3106 20 1 -0.3634 0.3856 0.9525 21 1 -0.3633 0.6323 -0.8102 22 1 -0.3633 -1.0177 -0.1424 23 1 1.4952 1.8689 -0.8039 24 1 1.7282 1.7796 0.9517 25 1 3.7846 0.6094 -0.9568 26 1 3.8029 2.3371 -0.5243 27 1 5.8480 1.5333 2.1669 28 1 5.9870 1.7944 0.4117 29 1 7.7631 4.6660 1.8810 30 1 5.3962 -0.6184 0.6377 31 1 4.6664 -0.6273 2.2528 32 1 3.5164 -2.3420 1.1038 33 1 3.4233 -1.3983 -0.3946 34 1 2.6349 -0.6064 3.1325 35 1 1.1001 0.2044 2.7385 36 1 2.6412 0.8952 2.1768 37 1 0.0762 -1.6818 1.5899 38 1 0.9955 -2.6238 0.3916 39 1 1.4631 -2.6699 2.1085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606269473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:00 Heat of formation + Delta-G solvation = 26.293588 kcal Electronic energy + Delta-G solvation = -17208.379895 eV Core-core repulsion = 14765.669525 eV Total energy + Delta-G solvation = -2442.710369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95186 -35.86464 -33.49288 -32.51002 -29.30451 -28.53717 -26.87999 -26.22818 -24.27411 -23.07630 -21.85608 -19.37275 -17.91873 -16.45918 -15.88586 -15.50720 -14.92794 -14.54935 -14.31568 -13.44242 -13.17919 -13.03865 -12.59247 -12.30137 -12.18599 -11.83222 -11.54474 -11.44044 -11.24924 -10.93701 -10.82863 -10.63593 -10.49070 -10.45321 -10.28385 -10.21520 -10.01159 -9.66869 -9.14458 -8.43290 -7.70989 -6.96469 -6.02219 -4.03613 3.30801 3.38458 3.43023 4.31145 4.42400 4.95295 5.16277 5.23174 5.33122 5.39754 5.56902 5.67868 5.70265 5.80709 5.88442 5.95647 6.00227 6.03098 6.12876 6.15127 6.23143 6.29624 6.37354 6.49578 6.56368 6.63684 6.74362 6.83969 7.25825 7.32284 7.49895 7.58189 7.82783 7.88598 8.16613 8.31827 8.58293 9.05441 9.60878 11.08394 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039351 B = 0.007785 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.379727 B = 3595.717815 C = 3939.156156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.068 3.932 4 C 0.071 3.929 5 N -0.543 5.543 6 C 0.194 3.806 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.062 3.938 16 C -0.107 4.107 17 C 0.124 3.876 18 C -0.201 4.201 19 C -0.144 4.144 20 H 0.021 0.979 21 H 0.058 0.942 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.028 0.972 28 H -0.009 1.009 29 H 0.260 0.740 30 H 0.023 0.977 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.134 0.866 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -9.295 -2.222 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.270 5.270 3 C -0.062 4.062 4 C -0.058 4.058 5 N -0.268 5.268 6 C 0.069 3.931 7 C -0.544 4.544 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.065 4.065 16 C -0.145 4.145 17 C 0.036 3.964 18 C -0.259 4.259 19 C -0.202 4.202 20 H 0.040 0.960 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.152 0.848 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.310 -9.305 -2.268 14.072 hybrid contribution 0.142 1.109 0.320 1.163 sum -10.168 -8.196 -1.948 13.204 Atomic orbital electron populations 1.22366 0.88437 1.01488 0.99701 1.59602 1.06403 1.14670 1.46325 1.21084 0.96460 0.88476 1.00137 1.21791 0.92300 1.01214 0.90525 1.60889 1.30550 1.02924 1.32406 1.19750 0.85981 0.91528 0.95819 1.21212 0.93551 0.91401 1.48218 0.91827 1.24986 0.94845 0.99175 0.95603 1.69969 1.00337 1.33275 1.50235 0.86475 0.78792 0.84729 0.77627 1.19676 1.21077 1.21138 1.22325 0.95235 0.88785 1.00188 1.21518 0.93704 0.97781 1.01500 1.20569 0.93786 0.92235 0.89786 1.23038 1.00769 1.05825 0.96248 1.22103 0.99227 0.97669 1.01192 0.96015 0.92304 0.91658 0.92286 0.94399 0.94978 0.89657 0.95416 0.99118 0.93011 0.95842 0.91913 0.91996 0.91578 0.93421 0.95369 0.84807 0.92725 0.92493 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 8.30 60.07 0.50 0.86 16 2 N -0.55 -8.43 4.24 -232.28 -0.98 -9.41 16 3 C 0.07 1.18 4.80 -6.75 -0.03 1.15 16 4 C 0.07 1.40 5.05 -4.45 -0.02 1.38 16 5 N -0.54 -11.45 1.84 -235.61 -0.43 -11.88 16 6 C 0.19 4.99 4.60 -4.97 -0.02 4.97 16 7 C -0.51 -13.94 8.12 -34.44 -0.28 -14.22 16 8 H 0.06 1.74 7.61 -52.49 -0.40 1.34 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 11 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.06 1.14 4.64 -2.71 -0.01 1.13 16 16 C -0.11 -1.64 4.80 -27.36 -0.13 -1.78 16 17 C 0.12 1.87 0.72 -132.15 -0.09 1.78 16 18 C -0.20 -3.36 6.66 37.16 0.25 -3.11 16 19 C -0.14 -1.77 7.07 37.16 0.26 -1.51 16 20 H 0.02 0.28 7.69 -51.93 -0.40 -0.12 16 21 H 0.06 0.70 7.89 -51.93 -0.41 0.30 16 22 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 23 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 24 H 0.04 0.72 6.19 -51.93 -0.32 0.40 16 25 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 26 H 0.09 1.85 6.72 -51.93 -0.35 1.50 16 27 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.02 0.44 8.03 -51.93 -0.42 0.02 16 31 H 0.06 1.14 7.62 -51.93 -0.40 0.74 16 32 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 33 H 0.07 1.06 7.25 -51.93 -0.38 0.68 16 34 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 35 H 0.03 0.45 7.82 -51.93 -0.41 0.04 16 36 H 0.13 2.67 3.64 -51.93 -0.19 2.48 16 37 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 38 H 0.06 0.66 8.00 -51.93 -0.42 0.25 16 39 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 284.51 15.07 4.29 4.29 Total: -1.00 -28.50 284.51 -7.81 -36.30 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.71 Total: -2.04 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.32 Total: -7.90 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.68 Total: -47.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.50 -7.81 -36.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606269473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.597 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds