Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 C 1.53001 * 109.47240 * 240.00088 * 2 1 3 5 5 C 1.50702 * 109.47138 * 59.99829 * 4 2 1 6 6 H 1.08004 * 119.99849 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99671 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47241 * 89.99708 * 9 7 5 11 11 H 1.48500 * 109.46918 * 209.99640 * 9 7 5 12 12 H 1.48495 * 109.47062 * 329.99335 * 9 7 5 13 13 C 1.53001 * 109.47445 * 119.99770 * 2 1 3 14 14 N 1.46897 * 109.47189 * 300.00038 * 13 2 1 15 15 N 1.45399 * 111.00129 * 174.31678 * 14 13 2 16 16 C 1.48538 * 110.99881 * 8.63859 * 15 14 13 17 17 C 1.54930 * 103.22382 * 159.72153 * 16 15 14 18 18 C 1.54593 * 102.92779 * 322.58902 * 17 16 15 19 19 C 1.47897 * 111.00196 * 126.03887 * 15 14 13 20 20 H 1.09003 * 109.47386 * 299.99999 * 1 2 3 21 21 H 1.08997 * 109.47619 * 60.00405 * 1 2 3 22 22 H 1.09002 * 109.47102 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47709 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46959 * 300.00441 * 3 2 1 25 25 H 1.09003 * 109.46969 * 59.99746 * 3 2 1 26 26 H 1.09004 * 109.46942 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47132 * 300.00052 * 4 2 1 28 28 H 0.96999 * 119.99840 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46990 * 179.97438 * 13 2 1 30 30 H 1.09002 * 109.46653 * 60.00116 * 13 2 1 31 31 H 1.00899 * 110.99958 * 50.36609 * 14 13 2 32 32 H 1.09001 * 110.66838 * 278.15769 * 16 15 14 33 33 H 1.08996 * 110.66520 * 41.29060 * 16 15 14 34 34 H 1.09004 * 110.72571 * 204.23188 * 17 16 15 35 35 H 1.09008 * 110.72604 * 80.94952 * 17 16 15 36 36 H 1.08998 * 110.31297 * 263.04542 * 18 17 16 37 37 H 1.08996 * 110.31320 * 140.87204 * 18 17 16 38 38 H 1.08997 * 109.91540 * 333.50976 * 19 15 14 39 39 H 1.09003 * 109.91772 * 94.60527 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2470 0.3980 -5.2572 10 1 2.2248 1.4398 -5.6619 11 1 1.0817 -0.5814 -6.3611 12 1 -0.0612 1.0354 -4.9610 13 6 2.0400 -0.7212 1.2493 14 7 1.5504 -0.0287 2.4487 15 7 1.9038 -0.7611 3.6540 16 6 2.8295 -1.8807 3.3444 17 6 3.4889 -2.1842 4.7131 18 6 3.6542 -0.7793 5.3365 19 6 2.6260 0.1069 4.6091 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 -0.0005 24 1 1.6765 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 -0.7208 -1.2494 27 1 1.6766 -1.7489 -1.2493 28 1 2.8607 -1.8827 -4.7336 29 1 3.1301 -0.7215 1.2489 30 1 1.6767 -1.7489 1.2492 31 1 0.5543 0.1235 2.3970 32 1 2.2770 -2.7479 2.9827 33 1 3.5791 -1.5700 2.6167 34 1 4.4590 -2.6621 4.5764 35 1 2.8355 -2.8042 5.3271 36 1 4.6637 -0.4057 5.1653 37 1 3.4378 -0.8113 6.4043 38 1 3.1380 0.9050 4.0716 39 1 1.9250 0.5331 5.3268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686777379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = 17.786256 kcal Electronic energy + Delta-G solvation = -16361.604458 eV Core-core repulsion = 13918.525183 eV Total energy + Delta-G solvation = -2443.079275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.91805 -36.87875 -33.32462 -32.00912 -29.09849 -28.13851 -26.73619 -26.37936 -25.09362 -22.74630 -20.76395 -20.36913 -17.85402 -16.62656 -16.26355 -15.96650 -14.77397 -14.50845 -14.18379 -13.53041 -13.23738 -12.88002 -12.62508 -12.45156 -12.01794 -11.98337 -11.76792 -11.36532 -11.17779 -11.00361 -10.92169 -10.78015 -10.64092 -10.52421 -10.22940 -10.07879 -9.75826 -9.51743 -8.96306 -8.84351 -8.33006 -7.63281 -5.97427 -3.97777 3.32966 3.39536 3.42213 3.66848 4.47739 4.52188 4.72203 4.93646 5.31365 5.37448 5.38549 5.50975 5.63018 5.67099 5.76305 5.80212 5.84519 5.96094 6.01001 6.03245 6.16601 6.21802 6.29433 6.45858 6.59819 6.74462 6.78502 6.81230 7.17602 7.20900 7.24757 7.55732 7.67589 7.74969 7.82169 8.02371 8.46307 9.07322 9.65191 11.14284 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.051894 B = 0.005591 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.435043 B = 5007.110129 C = 5249.557018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.118 4.118 4 C 0.035 3.965 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.052 3.948 14 N -0.540 5.540 15 N -0.366 5.366 16 C 0.010 3.990 17 C -0.123 4.123 18 C -0.132 4.132 19 C 0.041 3.959 20 H 0.034 0.966 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.014 0.986 27 H 0.013 0.987 28 H 0.259 0.741 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.354 0.646 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 1.113 15.178 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 C -0.175 4.175 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.077 4.077 14 N -0.264 5.264 15 N -0.180 5.180 16 C -0.118 4.118 17 C -0.162 4.162 18 C -0.171 4.171 19 C -0.087 4.087 20 H 0.052 0.948 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.174 0.826 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.365 1.245 15.318 15.373 hybrid contribution -0.097 -0.110 -1.442 1.450 sum 0.268 1.135 13.876 13.925 Atomic orbital electron populations 1.21792 0.95828 1.00633 1.00525 1.20655 0.94915 0.96069 0.94239 1.21631 0.99811 0.95796 1.00306 1.19118 0.96072 0.95026 0.90054 1.21224 1.30866 1.11926 0.90562 0.92252 1.25012 0.95392 0.95084 0.99071 1.69965 1.37286 1.23165 1.23323 0.86653 0.79252 0.79415 0.83046 1.20772 1.21371 1.19906 1.22497 0.99856 0.96019 0.89365 1.63814 1.21167 1.44254 0.97154 1.68075 1.37786 1.05809 1.06310 1.23642 0.95672 0.95133 0.97403 1.22449 1.00571 0.97010 0.96153 1.22424 0.99179 0.95442 1.00031 1.22817 0.95273 0.95872 0.94787 0.94752 0.91490 0.93879 0.94165 0.92389 0.94012 0.96728 0.96819 0.93143 0.91393 0.94777 0.82585 0.90095 0.91792 0.91054 0.90970 0.91586 0.91252 0.92372 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.91 37.15 0.29 -2.15 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.86 7.65 -34.44 -0.26 -14.12 16 6 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.05 0.92 3.55 -3.83 -0.01 0.91 16 14 N -0.54 -8.53 6.17 -10.37 -0.06 -8.59 16 15 N -0.37 -5.27 6.18 -110.09 -0.68 -5.95 16 16 C 0.01 0.13 5.25 -1.90 -0.01 0.12 16 17 C -0.12 -1.31 7.06 -24.88 -0.18 -1.49 16 18 C -0.13 -1.35 6.93 -25.37 -0.18 -1.53 16 19 C 0.04 0.51 6.97 -2.76 -0.02 0.49 16 20 H 0.03 0.55 6.44 -51.93 -0.33 0.21 16 21 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16 25 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 30 H 0.03 0.62 7.11 -51.93 -0.37 0.25 16 31 H 0.35 5.49 6.81 -174.66 -1.19 4.30 16 32 H 0.08 1.11 7.65 -51.93 -0.40 0.72 16 33 H 0.06 0.94 5.88 -51.93 -0.31 0.64 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -28.90 296.41 -8.59 -37.49 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.66 Total: 0.90 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -0.37 Total: -18.77 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.01 Total: -40.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.90 -8.59 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.277 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds