Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47162 * 2 1 4 4 C 1.53001 * 109.47240 * 240.00088 * 2 1 3 5 5 C 1.50702 * 109.47138 * 59.99829 * 4 2 1 6 6 H 1.08004 * 119.99849 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99671 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47241 * 89.99708 * 9 7 5 11 11 H 1.48500 * 109.46918 * 209.99640 * 9 7 5 12 12 H 1.48495 * 109.47062 * 329.99335 * 9 7 5 13 13 C 1.53001 * 109.47445 * 119.99770 * 2 1 3 14 14 N 1.46897 * 109.47189 * 300.00038 * 13 2 1 15 15 N 1.45399 * 111.00129 * 174.31678 * 14 13 2 16 16 C 1.48538 * 110.99881 * 8.63859 * 15 14 13 17 17 C 1.54930 * 103.22382 * 159.72153 * 16 15 14 18 18 C 1.54593 * 102.92779 * 322.58902 * 17 16 15 19 19 C 1.47897 * 111.00196 * 126.03887 * 15 14 13 20 20 H 1.09003 * 109.47386 * 299.99999 * 1 2 3 21 21 H 1.08997 * 109.47619 * 60.00405 * 1 2 3 22 22 H 1.09002 * 109.47102 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47709 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46959 * 300.00441 * 3 2 1 25 25 H 1.09003 * 109.46969 * 59.99746 * 3 2 1 26 26 H 1.09004 * 109.46942 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47132 * 300.00052 * 4 2 1 28 28 H 0.96999 * 119.99840 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46990 * 179.97438 * 13 2 1 30 30 H 1.09002 * 109.46653 * 60.00116 * 13 2 1 31 31 H 1.00899 * 110.99958 * 50.36609 * 14 13 2 32 32 H 1.09001 * 110.66838 * 278.15769 * 16 15 14 33 33 H 1.08996 * 110.66520 * 41.29060 * 16 15 14 34 34 H 1.09004 * 110.72571 * 204.23188 * 17 16 15 35 35 H 1.09008 * 110.72604 * 80.94952 * 17 16 15 36 36 H 1.08998 * 110.31297 * 263.04542 * 18 17 16 37 37 H 1.08996 * 110.31320 * 140.87204 * 18 17 16 38 38 H 1.08997 * 109.91540 * 333.50976 * 19 15 14 39 39 H 1.09003 * 109.91772 * 94.60527 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2470 0.3980 -5.2572 10 1 2.2248 1.4398 -5.6619 11 1 1.0817 -0.5814 -6.3611 12 1 -0.0612 1.0354 -4.9610 13 6 2.0400 -0.7212 1.2493 14 7 1.5504 -0.0287 2.4487 15 7 1.9038 -0.7611 3.6540 16 6 2.8295 -1.8807 3.3444 17 6 3.4889 -2.1842 4.7131 18 6 3.6542 -0.7793 5.3365 19 6 2.6260 0.1069 4.6091 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 -0.0005 24 1 1.6765 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 -0.7208 -1.2494 27 1 1.6766 -1.7489 -1.2493 28 1 2.8607 -1.8827 -4.7336 29 1 3.1301 -0.7215 1.2489 30 1 1.6767 -1.7489 1.2492 31 1 0.5543 0.1235 2.3970 32 1 2.2770 -2.7479 2.9827 33 1 3.5791 -1.5700 2.6167 34 1 4.4590 -2.6621 4.5764 35 1 2.8355 -2.8042 5.3271 36 1 4.6637 -0.4057 5.1653 37 1 3.4378 -0.8113 6.4043 38 1 3.1380 0.9050 4.0716 39 1 1.9250 0.5331 5.3268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686777379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = -0.264280 kcal Electronic energy + Delta-G solvation = -16362.387188 eV Core-core repulsion = 13918.525183 eV Total energy + Delta-G solvation = -2443.862005 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12821 -38.36513 -35.00094 -33.71287 -30.18653 -29.55118 -28.45019 -27.95883 -26.61310 -24.57335 -21.72928 -21.57969 -19.41317 -18.36218 -17.86549 -17.07638 -16.45889 -16.07250 -15.51466 -14.98037 -14.71335 -14.49189 -13.96611 -13.83010 -13.63853 -13.29951 -13.09910 -12.82620 -12.68443 -12.56223 -12.30766 -12.24417 -12.20381 -12.10089 -11.83169 -11.48670 -11.39380 -11.05244 -10.79201 -10.52309 -10.48330 -8.86894 -8.15363 -6.22749 1.41069 1.41440 1.52142 2.40900 2.50686 3.18791 3.49979 3.81753 3.99278 4.07450 4.12647 4.23623 4.30581 4.39332 4.60818 4.66648 4.73137 4.77153 4.84045 4.93638 4.96733 5.02250 5.07804 5.13648 5.15982 5.16948 5.32209 5.47301 5.49094 5.53423 5.59485 5.72290 5.82416 5.89624 6.23775 6.33634 6.52837 6.91924 7.44849 8.97139 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.051894 B = 0.005591 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.435043 B = 5007.110129 C = 5249.557018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.054 4.054 3 C -0.109 4.109 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.068 0.932 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.070 3.930 14 N -0.537 5.537 15 N -0.370 5.370 16 C 0.004 3.996 17 C -0.116 4.116 18 C -0.126 4.126 19 C 0.037 3.963 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.037 0.963 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.066 0.934 26 H -0.017 1.017 27 H -0.016 1.016 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.357 0.643 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 2.180 16.580 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.166 4.166 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.186 1.186 13 C -0.060 4.060 14 N -0.261 5.261 15 N -0.185 5.185 16 C -0.125 4.125 17 C -0.155 4.155 18 C -0.165 4.165 19 C -0.091 4.091 20 H 0.086 0.914 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.364 2.329 16.736 16.901 hybrid contribution 0.151 -0.470 -1.813 1.879 sum -0.213 1.859 14.923 15.040 Atomic orbital electron populations 1.21709 0.94370 1.00605 1.01427 1.20506 0.96027 0.96102 0.92862 1.21533 0.99129 0.95139 1.00819 1.18989 0.94013 0.94023 0.92587 1.21601 1.30389 1.11977 0.91324 0.91434 1.25923 0.95662 0.95848 1.02609 1.70108 1.38837 1.24919 1.24086 0.85557 0.79153 0.78202 0.78834 1.20117 1.21253 1.18560 1.22147 0.99035 0.95307 0.89495 1.63761 1.21324 1.44053 0.96946 1.68131 1.38696 1.06281 1.05362 1.23676 0.95208 0.94631 0.98935 1.22454 1.01117 0.97686 0.94264 1.22428 0.98788 0.94336 1.00930 1.22931 0.95951 0.95722 0.94500 0.91392 0.92942 0.94407 0.95158 0.93677 0.91493 0.99838 0.99734 0.93135 0.92518 0.95727 0.82210 0.90868 0.93555 0.89784 0.89979 0.91006 0.89088 0.93608 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 7.91 71.98 0.57 -3.94 16 2 C -0.05 -2.15 0.60 -52.18 -0.03 -2.19 16 3 C -0.11 -4.16 8.06 71.98 0.58 -3.58 16 4 C 0.04 2.17 4.04 29.85 0.12 2.29 16 5 C -0.51 -28.52 7.65 25.60 0.20 -28.32 16 6 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.07 2.50 3.55 86.30 0.31 2.81 16 14 N -0.54 -16.26 6.17 -186.72 -1.15 -17.42 16 15 N -0.37 -10.11 6.18 -502.21 -3.10 -13.22 16 16 C 0.00 0.10 5.25 86.65 0.45 0.56 16 17 C -0.12 -2.23 7.06 31.80 0.22 -2.01 16 18 C -0.13 -2.23 6.93 31.47 0.22 -2.01 16 19 C 0.04 0.85 6.97 86.45 0.60 1.45 16 20 H 0.07 2.01 6.44 -2.39 -0.02 2.00 16 21 H 0.05 2.06 6.62 -2.39 -0.02 2.04 16 22 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 1.82 6.62 -2.39 -0.02 1.80 16 25 H 0.07 2.21 7.60 -2.39 -0.02 2.19 16 26 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 27 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.06 2.15 6.44 -2.38 -0.02 2.14 16 30 H 0.02 0.92 7.11 -2.39 -0.02 0.90 16 31 H 0.36 10.31 6.81 -204.85 -1.39 8.92 16 32 H 0.07 2.01 7.65 -2.39 -0.02 1.99 16 33 H 0.05 1.38 5.88 -2.39 -0.01 1.37 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.16 8.00 -2.39 -0.02 1.14 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.57 296.41 1.37 -61.19 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.38 Total: 14.92 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.70 Total: -34.68 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -3.97 Total: -87.88 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -62.57 1.37 -61.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686777379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.926 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds