Wall clock time and date at job start Mon Mar 30 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99984 * 2 1 4 4 C 1.50694 * 109.47186 * 66.04705 * 3 2 1 5 5 H 1.08004 * 120.00133 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00035 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00176 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00230 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46880 * 59.99509 * 8 6 4 10 10 H 1.48499 * 109.47190 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46924 * 300.00121 * 8 6 4 12 12 C 1.46902 * 111.00208 * 236.04404 * 2 1 3 13 13 H 1.08993 * 109.52348 * 179.07700 * 12 2 1 14 14 C 1.53119 * 109.51729 * 58.95336 * 12 2 1 15 15 C 1.53044 * 109.27589 * 182.37745 * 14 12 2 16 16 N 1.46847 * 109.51335 * 59.18419 * 15 14 12 17 17 C 1.46847 * 111.20163 * 298.24410 * 16 15 14 18 18 C 1.53001 * 109.46905 * 301.74218 * 17 16 15 19 19 C 1.52994 * 109.45537 * 181.76482 * 17 16 15 20 20 C 1.53041 * 109.51486 * 61.75514 * 17 16 15 21 21 H 1.08995 * 109.47169 * 183.95859 * 1 2 3 22 22 H 1.09001 * 109.47102 * 303.95694 * 1 2 3 23 23 H 1.08998 * 109.46971 * 63.95382 * 1 2 3 24 24 H 1.09001 * 109.46872 * 186.04553 * 3 2 1 25 25 H 1.08997 * 109.47043 * 306.04630 * 3 2 1 26 26 H 0.96992 * 120.00086 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.50507 * 62.44410 * 14 12 2 28 28 H 1.08996 * 109.50916 * 302.31726 * 14 12 2 29 29 H 1.09002 * 109.46396 * 179.19729 * 15 14 12 30 30 H 1.08994 * 109.46485 * 299.17654 * 15 14 12 31 31 H 1.00902 * 110.99979 * 62.35429 * 16 15 14 32 32 H 1.09000 * 109.47232 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47415 * 300.04723 * 18 17 16 34 34 H 1.09005 * 109.47420 * 60.04514 * 18 17 16 35 35 H 1.09001 * 109.47072 * 299.96047 * 19 17 16 36 36 H 1.08995 * 109.47111 * 59.96179 * 19 17 16 37 37 H 1.08999 * 109.46991 * 179.97438 * 19 17 16 38 38 H 1.08996 * 109.50341 * 180.87808 * 20 17 16 39 39 H 1.09004 * 109.53393 * 60.77542 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3495 1.5284 7 7 2.7120 4.0019 0.6149 8 14 1.5819 4.1874 3.1376 9 1 2.1735 3.4303 4.2699 10 1 2.1142 5.5737 3.1376 11 1 0.1047 4.2237 3.2848 12 6 1.9955 -0.7660 -1.1376 13 1 3.0850 -0.7366 -1.1235 14 6 1.4840 -0.1562 -2.4456 15 6 1.9871 -0.9932 -3.6240 16 7 1.5062 -2.3738 -3.4857 17 6 2.0234 -2.9960 -2.2602 18 6 3.5530 -2.9747 -2.2839 19 6 1.5349 -4.4436 -2.1784 20 6 1.5214 -2.2188 -1.0411 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4512 -0.9233 24 1 3.0798 1.3444 -0.1082 25 1 1.5611 1.9274 -0.8309 26 1 2.9865 4.9180 0.7769 27 1 1.8540 0.8647 -2.5403 28 1 0.3941 -0.1501 -2.4426 29 1 1.6128 -0.5699 -4.5561 30 1 3.0769 -0.9876 -3.6344 31 1 0.4982 -2.4099 -3.5121 32 1 3.9370 -3.4370 -1.3745 33 1 3.9108 -3.5283 -3.1521 34 1 3.9013 -1.9434 -2.3418 35 1 0.4451 -4.4589 -2.1612 36 1 1.8923 -4.9972 -3.0466 37 1 1.9190 -4.9058 -1.2691 38 1 1.9180 -2.6714 -0.1324 39 1 0.4320 -2.2451 -1.0154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691731663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:41 Heat of formation + Delta-G solvation = -3.427095 kcal Electronic energy + Delta-G solvation = -16789.159961 eV Core-core repulsion = 14345.160807 eV Total energy + Delta-G solvation = -2443.999155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80740 -36.22003 -32.80381 -32.43346 -29.92362 -27.76729 -27.02535 -26.70251 -25.16359 -22.43766 -21.88338 -19.46787 -18.65691 -16.40679 -15.62225 -15.27024 -14.99376 -14.50384 -13.89446 -13.80154 -13.48001 -13.06558 -13.05624 -12.24293 -12.04173 -11.91877 -11.89230 -11.62063 -11.44707 -11.14235 -10.99842 -10.89136 -10.72008 -10.65162 -10.34275 -10.24548 -10.01004 -9.65228 -9.19930 -8.44651 -8.20330 -7.15023 -6.02404 -4.03711 3.33090 3.37028 3.40108 4.29989 4.42668 4.80209 4.97211 5.07927 5.24661 5.33034 5.37287 5.54191 5.58019 5.67355 5.74355 5.77740 5.88666 5.93410 6.02309 6.08887 6.13209 6.22525 6.25803 6.31132 6.37358 6.40164 6.52850 6.72251 6.78238 7.22159 7.31266 7.38439 7.51430 7.80885 8.10661 8.22567 8.57833 9.03822 9.60378 11.08383 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048590 B = 0.006298 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.114386 B = 4444.869419 C = 4601.370780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.535 5.535 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.086 3.914 13 H 0.076 0.924 14 C -0.191 4.191 15 C 0.059 3.941 16 N -0.678 5.678 17 C 0.108 3.892 18 C -0.141 4.141 19 C -0.136 4.136 20 C -0.135 4.135 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.013 0.987 24 H 0.027 0.973 25 H -0.007 1.007 26 H 0.261 0.739 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.336 0.664 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -12.707 -6.816 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.257 5.257 3 C 0.069 3.931 4 C -0.547 4.547 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.023 4.023 13 H 0.094 0.906 14 C -0.232 4.232 15 C -0.071 4.071 16 N -0.307 5.307 17 C 0.016 3.984 18 C -0.198 4.198 19 C -0.193 4.193 20 C -0.175 4.175 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.031 0.969 24 H 0.045 0.955 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.390 -13.017 -6.803 14.753 hybrid contribution -1.055 1.603 0.812 2.083 sum -2.445 -11.414 -5.991 13.121 Atomic orbital electron populations 1.22265 0.89506 0.99346 1.00419 1.62336 1.06702 1.17838 1.38836 1.19695 0.95183 0.81764 0.96475 1.21147 1.34806 0.96918 1.01798 0.92025 1.24987 0.95316 0.97339 0.96960 1.69947 1.38381 1.11482 1.34099 0.86565 0.78669 0.78349 0.83854 1.20166 1.21340 1.20321 1.21710 0.99455 0.92551 0.88586 0.90612 1.22950 1.01327 1.01358 0.97546 1.21998 1.00843 0.87159 0.97132 1.60768 1.14540 1.18021 1.37378 1.20928 0.95468 0.93759 0.88238 1.21919 0.94007 1.02381 1.01518 1.21791 1.00717 0.95072 1.01769 1.22346 1.00675 0.95797 0.98654 0.93682 0.90998 0.96853 0.95526 0.98948 0.92895 0.90949 0.92094 0.91382 0.90709 0.84706 0.92335 0.92419 0.92020 0.93024 0.92132 0.92227 0.91125 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.64 60.07 0.52 1.18 16 2 N -0.53 -11.63 4.75 -236.18 -1.12 -12.75 16 3 C 0.19 5.09 4.16 -4.98 -0.02 5.07 16 4 C -0.51 -14.45 8.46 -34.44 -0.29 -14.75 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.36 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.09 1.55 1.98 -67.59 -0.13 1.41 16 13 H 0.08 1.44 6.45 -51.93 -0.34 1.10 16 14 C -0.19 -3.17 4.67 -26.65 -0.12 -3.29 16 15 C 0.06 0.80 6.26 -3.83 -0.02 0.78 16 16 N -0.68 -8.54 6.30 -100.00 -0.63 -9.17 16 17 C 0.11 1.35 0.94 -131.61 -0.12 1.22 16 18 C -0.14 -1.75 7.87 37.16 0.29 -1.46 16 19 C -0.14 -1.44 8.75 37.15 0.32 -1.12 16 20 C -0.14 -2.00 4.02 -26.65 -0.11 -2.11 16 21 H 0.04 0.77 6.28 -51.93 -0.33 0.45 16 22 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 23 H 0.01 0.26 6.24 -51.93 -0.32 -0.07 16 24 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 25 H -0.01 -0.20 7.00 -51.93 -0.36 -0.57 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.07 1.38 6.88 -51.93 -0.36 1.02 16 28 H 0.06 1.02 6.27 -51.93 -0.33 0.69 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.04 6.19 -51.93 -0.32 0.72 16 31 H 0.34 3.99 8.79 -39.29 -0.35 3.65 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.84 4.80 -51.93 -0.25 0.59 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.89 6.31 -51.93 -0.33 0.56 16 LS Contribution 288.80 15.07 4.35 4.35 Total: -1.00 -29.34 288.80 -7.98 -37.32 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.51 Total: 1.22 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.21 Total: -11.57 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -1.02 Total: -48.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.34 -7.98 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691731663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.893 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds