Wall clock time and date at job start Mon Mar 30 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99984 * 2 1 4 4 C 1.50694 * 109.47186 * 66.04705 * 3 2 1 5 5 H 1.08004 * 120.00133 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00035 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00176 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00230 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46880 * 59.99509 * 8 6 4 10 10 H 1.48499 * 109.47190 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46924 * 300.00121 * 8 6 4 12 12 C 1.46902 * 111.00208 * 236.04404 * 2 1 3 13 13 H 1.08993 * 109.52348 * 179.07700 * 12 2 1 14 14 C 1.53119 * 109.51729 * 58.95336 * 12 2 1 15 15 C 1.53044 * 109.27589 * 182.37745 * 14 12 2 16 16 N 1.46847 * 109.51335 * 59.18419 * 15 14 12 17 17 C 1.46847 * 111.20163 * 298.24410 * 16 15 14 18 18 C 1.53001 * 109.46905 * 301.74218 * 17 16 15 19 19 C 1.52994 * 109.45537 * 181.76482 * 17 16 15 20 20 C 1.53041 * 109.51486 * 61.75514 * 17 16 15 21 21 H 1.08995 * 109.47169 * 183.95859 * 1 2 3 22 22 H 1.09001 * 109.47102 * 303.95694 * 1 2 3 23 23 H 1.08998 * 109.46971 * 63.95382 * 1 2 3 24 24 H 1.09001 * 109.46872 * 186.04553 * 3 2 1 25 25 H 1.08997 * 109.47043 * 306.04630 * 3 2 1 26 26 H 0.96992 * 120.00086 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.50507 * 62.44410 * 14 12 2 28 28 H 1.08996 * 109.50916 * 302.31726 * 14 12 2 29 29 H 1.09002 * 109.46396 * 179.19729 * 15 14 12 30 30 H 1.08994 * 109.46485 * 299.17654 * 15 14 12 31 31 H 1.00902 * 110.99979 * 62.35429 * 16 15 14 32 32 H 1.09000 * 109.47232 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47415 * 300.04723 * 18 17 16 34 34 H 1.09005 * 109.47420 * 60.04514 * 18 17 16 35 35 H 1.09001 * 109.47072 * 299.96047 * 19 17 16 36 36 H 1.08995 * 109.47111 * 59.96179 * 19 17 16 37 37 H 1.08999 * 109.46991 * 179.97438 * 19 17 16 38 38 H 1.08996 * 109.50341 * 180.87808 * 20 17 16 39 39 H 1.09004 * 109.53393 * 60.77542 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3495 1.5284 7 7 2.7120 4.0019 0.6149 8 14 1.5819 4.1874 3.1376 9 1 2.1735 3.4303 4.2699 10 1 2.1142 5.5737 3.1376 11 1 0.1047 4.2237 3.2848 12 6 1.9955 -0.7660 -1.1376 13 1 3.0850 -0.7366 -1.1235 14 6 1.4840 -0.1562 -2.4456 15 6 1.9871 -0.9932 -3.6240 16 7 1.5062 -2.3738 -3.4857 17 6 2.0234 -2.9960 -2.2602 18 6 3.5530 -2.9747 -2.2839 19 6 1.5349 -4.4436 -2.1784 20 6 1.5214 -2.2188 -1.0411 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3633 0.4512 -0.9233 24 1 3.0798 1.3444 -0.1082 25 1 1.5611 1.9274 -0.8309 26 1 2.9865 4.9180 0.7769 27 1 1.8540 0.8647 -2.5403 28 1 0.3941 -0.1501 -2.4426 29 1 1.6128 -0.5699 -4.5561 30 1 3.0769 -0.9876 -3.6344 31 1 0.4982 -2.4099 -3.5121 32 1 3.9370 -3.4370 -1.3745 33 1 3.9108 -3.5283 -3.1521 34 1 3.9013 -1.9434 -2.3418 35 1 0.4451 -4.4589 -2.1612 36 1 1.8923 -4.9972 -3.0466 37 1 1.9190 -4.9058 -1.2691 38 1 1.9180 -2.6714 -0.1324 39 1 0.4320 -2.2451 -1.0154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691731663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:41 Heat of formation + Delta-G solvation = -24.458969 kcal Electronic energy + Delta-G solvation = -16790.071972 eV Core-core repulsion = 14345.160807 eV Total energy + Delta-G solvation = -2444.911165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08476 -37.78640 -34.79618 -33.70280 -31.45150 -29.30404 -28.30992 -27.90691 -26.96234 -23.98492 -23.43937 -20.92097 -19.86239 -18.56808 -17.04236 -16.69496 -16.39225 -16.12060 -15.32387 -15.21185 -15.05842 -14.58944 -14.28363 -14.08671 -13.31445 -13.28568 -12.98653 -12.87531 -12.84379 -12.70607 -12.59039 -12.41975 -12.29662 -12.20336 -11.90876 -11.73701 -11.54117 -11.27113 -11.02257 -10.63748 -9.36996 -8.91649 -8.22694 -6.33692 1.38472 1.41990 1.50010 2.37929 3.08983 3.19432 3.38626 3.70157 3.93216 4.04003 4.21589 4.25872 4.31461 4.42052 4.48981 4.61444 4.70748 4.76107 4.85120 4.91392 4.97198 5.00201 5.03240 5.07864 5.12235 5.15649 5.21645 5.26463 5.34551 5.43522 5.46093 5.62326 6.03486 6.13715 6.33052 6.51707 6.65508 6.82974 7.36278 8.87937 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048590 B = 0.006298 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.114386 B = 4444.869419 C = 4601.370780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.545 5.545 3 C 0.213 3.787 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.084 3.916 13 H 0.058 0.942 14 C -0.182 4.182 15 C 0.068 3.932 16 N -0.669 5.669 17 C 0.110 3.890 18 C -0.141 4.141 19 C -0.130 4.130 20 C -0.124 4.124 21 H 0.078 0.922 22 H 0.052 0.948 23 H 0.013 0.987 24 H -0.006 1.006 25 H -0.035 1.035 26 H 0.265 0.735 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.344 0.656 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -14.304 -6.606 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.268 5.268 3 C 0.087 3.913 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.025 4.025 13 H 0.076 0.924 14 C -0.222 4.222 15 C -0.062 4.062 16 N -0.299 5.299 17 C 0.019 3.981 18 C -0.198 4.198 19 C -0.188 4.188 20 C -0.164 4.164 21 H 0.097 0.903 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.012 0.988 25 H -0.017 1.017 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.422 -14.645 -6.603 16.246 hybrid contribution -0.713 2.071 0.709 2.303 sum -3.135 -12.574 -5.894 14.236 Atomic orbital electron populations 1.22237 0.88069 1.01072 0.99563 1.62248 1.08027 1.15202 1.41283 1.19279 0.93037 0.84115 0.94882 1.21477 1.35018 0.97600 1.02504 0.92024 1.25939 0.94939 0.98022 1.00782 1.70083 1.39281 1.11908 1.36278 0.85421 0.78857 0.77186 0.79068 1.19330 1.20713 1.19164 1.21789 0.98513 0.94256 0.87949 0.92371 1.22846 1.01142 0.99911 0.98349 1.21912 1.00667 0.87413 0.96225 1.60791 1.15205 1.16712 1.37167 1.20976 0.95473 0.94797 0.86902 1.21920 0.94076 1.01442 1.02382 1.21745 1.01288 0.93143 1.02600 1.22294 1.00902 0.93300 0.99888 0.90338 0.92894 0.96837 0.98795 1.01698 0.92659 0.94403 0.91938 0.89886 0.91056 0.83766 0.91750 0.91280 0.93879 0.92158 0.91286 0.91455 0.91436 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 8.64 127.69 1.10 2.62 16 2 N -0.54 -24.18 4.75 -901.15 -4.28 -28.46 16 3 C 0.21 11.73 4.16 85.55 0.36 12.08 16 4 C -0.53 -30.73 8.46 25.60 0.22 -30.51 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.07 5.46 84.65 0.46 0.53 16 7 N -0.94 -57.41 13.29 21.45 0.28 -57.13 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.08 3.03 1.98 44.99 0.09 3.12 16 13 H 0.06 2.30 6.45 -2.39 -0.02 2.28 16 14 C -0.18 -6.10 4.67 30.65 0.14 -5.96 16 15 C 0.07 1.80 6.26 86.33 0.54 2.34 16 16 N -0.67 -15.24 6.30 -470.28 -2.96 -18.21 16 17 C 0.11 2.50 0.94 3.55 0.00 2.51 16 18 C -0.14 -3.29 7.87 71.98 0.57 -2.72 16 19 C -0.13 -2.31 8.75 71.98 0.63 -1.68 16 20 C -0.12 -3.47 4.02 30.65 0.12 -3.35 16 21 H 0.08 2.54 6.28 -2.39 -0.02 2.52 16 22 H 0.05 2.26 6.76 -2.39 -0.02 2.25 16 23 H 0.01 0.52 6.24 -2.39 -0.01 0.50 16 24 H -0.01 -0.37 8.00 -2.39 -0.02 -0.39 16 25 H -0.03 -2.05 7.00 -2.39 -0.02 -2.07 16 26 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.04 1.52 6.88 -2.39 -0.02 1.50 16 28 H 0.06 2.06 6.27 -2.39 -0.01 2.04 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.96 6.19 -2.39 -0.01 1.94 16 31 H 0.34 7.12 8.79 -89.69 -0.79 6.34 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.16 4.80 -2.38 -0.01 1.15 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 1.78 6.31 -2.38 -0.02 1.77 16 Total: -1.00 -64.10 288.80 -0.46 -64.56 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.23 Total: 13.28 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.23 Total: -21.03 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -6.96 Total: -103.80 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.10 -0.46 -64.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691731663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.104 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds