Wall clock time and date at job start Mon Mar 30 2020 03:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99704 * 2 1 4 4 C 1.53003 * 109.47209 * 216.60809 * 3 2 1 5 5 C 1.53010 * 109.46873 * 63.66154 * 4 3 2 6 6 C 1.52995 * 109.47481 * 183.66067 * 4 3 2 7 7 N 1.46894 * 109.47065 * 303.66452 * 4 3 2 8 8 C 1.46898 * 110.99715 * 123.94780 * 2 1 3 9 9 C 1.53005 * 109.47093 * 69.93253 * 8 2 1 10 10 C 1.50698 * 115.55007 * 55.24574 * 9 8 2 11 11 H 1.08006 * 119.99960 * 245.90282 * 10 9 8 12 12 C 1.37881 * 119.99940 * 65.63369 * 10 9 8 13 13 N 1.31519 * 119.99813 * 0.58843 * 12 10 9 14 14 Si 1.86798 * 119.99770 * 180.59097 * 12 10 9 15 15 H 1.48498 * 109.47427 * 59.99977 * 14 12 10 16 16 H 1.48503 * 109.46703 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47002 * 299.99712 * 14 12 10 18 18 C 1.52996 * 117.49877 * 200.91926 * 9 8 2 19 19 C 1.53000 * 117.49451 * 269.58243 * 9 8 2 20 20 H 1.09000 * 109.47532 * 300.42660 * 1 2 3 21 21 H 1.09003 * 109.47323 * 60.43038 * 1 2 3 22 22 H 1.09002 * 109.47263 * 180.42974 * 1 2 3 23 23 H 1.09004 * 109.47183 * 336.61096 * 3 2 1 24 24 H 1.09005 * 109.47467 * 96.61133 * 3 2 1 25 25 H 1.08997 * 109.47046 * 64.92191 * 5 4 3 26 26 H 1.08992 * 109.46806 * 184.92327 * 5 4 3 27 27 H 1.09003 * 109.46678 * 304.92417 * 5 4 3 28 28 H 1.08998 * 109.46969 * 59.99919 * 6 4 3 29 29 H 1.08998 * 109.47291 * 180.02562 * 6 4 3 30 30 H 1.09008 * 109.47156 * 299.99982 * 6 4 3 31 31 H 1.00897 * 111.00095 * 313.30776 * 7 4 3 32 32 H 1.00902 * 111.00491 * 77.26269 * 7 4 3 33 33 H 1.08996 * 109.47926 * 309.92766 * 8 2 1 34 34 H 1.09003 * 109.47019 * 189.92449 * 8 2 1 35 35 H 0.96997 * 119.99748 * 184.94287 * 13 12 10 36 36 H 1.08998 * 117.49958 * 214.99853 * 18 9 8 37 37 H 1.08999 * 117.50099 * 0.02562 * 18 9 8 38 38 H 1.09003 * 117.49956 * 359.96919 * 19 9 8 39 39 H 1.08998 * 117.49924 * 144.97485 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.2592 1.4327 -0.8602 5 6 2.9043 1.1046 -2.3120 6 6 3.8585 2.8385 -0.7869 7 7 4.2378 0.4566 -0.3628 8 6 1.9954 -0.7659 1.1377 9 6 1.7160 -2.2548 0.9231 10 6 2.2323 -2.8334 -0.3690 11 1 1.5388 -3.1889 -1.1168 12 6 3.5900 -2.9038 -0.5990 13 7 4.4346 -2.4766 0.3141 14 14 4.2295 -3.6058 -2.2076 15 1 3.7153 -2.7953 -3.3407 16 1 5.7141 -3.5700 -2.2077 17 1 3.7677 -5.0096 -2.3534 18 6 1.7257 -3.1603 2.1563 19 6 0.4013 -2.8130 1.4717 20 1 -0.3634 0.5204 0.8861 21 1 -0.3634 0.5071 -0.8938 22 1 -0.3634 -1.0276 0.0077 23 1 1.2449 2.0487 -0.4080 24 1 2.2360 1.6683 1.0209 25 1 2.2462 1.8776 -2.7087 26 1 3.8158 1.0623 -2.9081 27 1 2.3980 0.1402 -2.3532 28 1 4.1112 3.0722 0.2473 29 1 4.7585 2.8822 -1.4001 30 1 3.1322 3.5628 -1.1561 31 1 4.3266 0.5128 0.6407 32 1 3.9949 -0.4789 -0.6525 33 1 1.5099 -0.4336 2.0552 34 1 3.0707 -0.6058 1.2171 35 1 5.3858 -2.4593 0.1247 36 1 2.1055 -4.1745 2.0331 37 1 1.9307 -2.6952 3.1206 38 1 -0.2643 -2.1197 1.9858 39 1 -0.0903 -3.5986 0.8978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691981488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:26 Heat of formation + Delta-G solvation = 28.068637 kcal Electronic energy + Delta-G solvation = -17416.771033 eV Core-core repulsion = 14974.137635 eV Total energy + Delta-G solvation = -2442.633397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.36184 -36.29563 -33.86905 -31.96252 -28.82075 -26.78292 -26.58059 -26.30603 -25.16057 -21.51700 -21.14408 -18.96092 -18.56510 -16.05466 -14.93554 -14.80973 -14.60669 -14.31976 -13.97937 -13.77567 -13.19561 -12.90229 -12.38627 -11.93458 -11.68444 -11.45480 -11.32686 -11.12296 -11.09502 -10.97267 -10.74914 -10.53542 -10.49726 -10.40145 -10.17540 -10.10118 -9.35540 -8.86616 -8.51330 -8.02147 -7.69151 -7.18921 -5.95038 -3.96661 3.38388 3.44929 3.46836 4.48469 4.67231 5.26183 5.28823 5.46860 5.51899 5.76087 5.78418 5.91662 5.98237 6.01340 6.10487 6.15831 6.22061 6.30564 6.39495 6.49488 6.50550 6.56222 6.64886 6.66453 6.69673 6.80569 6.98744 7.05367 7.11355 7.39924 7.50905 7.93928 7.97396 8.07376 8.31843 8.53171 8.76596 8.99186 9.64604 11.13033 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.014332 C = 0.010136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.894311 B = 1953.221235 C = 2761.788723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.512 5.512 3 C 0.027 3.973 4 C 0.120 3.880 5 C -0.135 4.135 6 C -0.133 4.133 7 N -0.841 5.841 8 C 0.091 3.909 9 C 0.064 3.936 10 C -0.462 4.462 11 H 0.055 0.945 12 C 0.073 3.927 13 N -0.883 5.883 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.282 1.282 18 C -0.179 4.179 19 C -0.216 4.216 20 H 0.004 0.996 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.328 0.672 32 H 0.378 0.622 33 H -0.007 1.007 34 H 0.096 0.904 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 6.948 -0.402 7.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.235 5.235 3 C -0.103 4.103 4 C 0.025 3.975 5 C -0.192 4.192 6 C -0.192 4.192 7 N -0.379 5.379 8 C -0.037 4.037 9 C 0.063 3.937 10 C -0.500 4.500 11 H 0.073 0.927 12 C -0.129 4.129 13 N -0.522 5.522 14 Si 0.711 3.289 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.208 1.208 18 C -0.217 4.217 19 C -0.253 4.253 20 H 0.023 0.977 21 H 0.070 0.930 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.201 0.799 33 H 0.011 0.989 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.795 7.042 -1.246 7.678 hybrid contribution -0.801 -0.322 0.578 1.039 sum -3.596 6.720 -0.668 7.651 Atomic orbital electron populations 1.22402 0.88978 1.02278 0.98123 1.61701 1.06186 1.10744 1.44833 1.22932 0.98385 0.90746 0.98273 1.20687 0.89417 0.92560 0.94792 1.21747 1.00456 1.02372 0.94650 1.21794 1.00451 0.95831 1.01090 1.59305 1.49422 1.12691 1.16477 1.21974 1.00757 0.93924 0.86997 1.18801 0.92269 0.89351 0.93234 1.20238 0.91034 1.38734 0.99963 0.92684 1.24821 0.96750 0.95329 0.95953 1.69859 1.02709 1.47173 1.32451 0.86805 0.77825 0.79472 0.84787 1.20173 1.21285 1.20753 1.22743 1.00077 1.01759 0.97135 1.22974 0.91590 1.04195 1.06567 0.97710 0.92981 0.90494 0.92596 0.95338 0.93885 0.93323 0.90630 0.93551 0.92326 0.93534 0.85886 0.79948 0.98914 0.88568 0.92719 0.90229 0.92179 0.92058 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.11 60.06 0.55 1.10 16 2 N -0.51 -10.17 3.38 -242.91 -0.82 -10.99 16 3 C 0.03 0.48 4.23 -3.82 -0.02 0.46 16 4 C 0.12 2.13 1.07 -131.60 -0.14 1.99 16 5 C -0.13 -2.42 8.52 37.16 0.32 -2.10 16 6 C -0.13 -2.01 8.80 37.15 0.33 -1.68 16 7 N -0.84 -17.29 8.16 0.74 0.01 -17.28 16 8 C 0.09 1.99 3.97 -3.82 -0.02 1.98 16 9 C 0.06 1.50 1.07 -155.66 -0.17 1.33 16 10 C -0.46 -11.89 8.53 -34.44 -0.29 -12.19 16 11 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 12 C 0.07 1.87 4.19 -17.82 -0.07 1.79 16 13 N -0.88 -22.91 10.78 55.43 0.60 -22.31 16 14 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.18 -4.06 9.96 -26.69 -0.27 -4.32 16 19 C -0.22 -4.58 8.26 -26.69 -0.22 -4.80 16 20 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 21 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 22 H 0.08 1.46 5.91 -51.93 -0.31 1.15 16 23 H 0.06 0.90 7.66 -51.93 -0.40 0.50 16 24 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.55 7.58 -51.93 -0.39 1.16 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.33 6.82 7.23 -39.29 -0.28 6.54 16 32 H 0.38 8.76 4.81 -39.29 -0.19 8.57 16 33 H -0.01 -0.16 8.03 -51.93 -0.42 -0.57 16 34 H 0.10 2.25 4.07 -51.93 -0.21 2.04 16 35 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 36 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 299.46 15.07 4.51 4.51 Total: -1.00 -25.12 299.46 -7.52 -32.64 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.79 Total: 14.02 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 0.00 Total: -16.44 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.22 Total: -50.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.12 -7.52 -32.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691981488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.709 kcal (2) G-P(sol) polarization free energy of solvation -25.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds